RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13585
(142 letters)
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A
2qb8_A*
Length = 397
Score = 103 bits (257), Expect = 3e-27
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 6 SIADFLTQSK-HLSENPSPCDTIHVVLGNESCDLDSAVSAILYAYFLVCNG--------- 55
++ +FL K + D + + +GNES D+DS SAI Y+Y
Sbjct: 7 TVPEFLAHLKSLPISKIASNDVLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKK 66
Query: 56 -DMRVLPMLNIPQKQLPIKTEVVYFLQENSICLENLIFRDSIN--LEQLSQSGKLKVTLV 112
++P+++IP++ L ++ +V+Y L++ I E L F + + + +SQ +L LV
Sbjct: 67 KGSFIVPIIDIPREDLSLRRDVMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELNSYLV 126
Query: 113 DHHVLANQDKFLKPYVIEILDHRP 136
D++ K V+ I+DH
Sbjct: 127 DNNDTPKNLKNYIDNVVGIIDHHF 150
>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2
domain, structural genomics, NPPSFA; 2.20A
{Methanocaldococcus jannaschii}
Length = 307
Score = 63.7 bits (155), Expect = 4e-13
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 22/110 (20%)
Query: 29 VVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLE 88
V+G+++ D DS SAI+ AYFL C P + I E + L++ +
Sbjct: 3 YVVGHKNPDTDSIASAIVLAYFLDC-----------YPARLGDINPETEFVLRKFGVMEP 51
Query: 89 NLIFRDSINLEQLSQSGKLKVTLVDHHVLA-NQDKFLKPYVIEILDHRPV 137
LI ++ LVDH + + D + +I I+DH V
Sbjct: 52 ELIESAK----------GKEIILVDHSEKSQSFDDLEEGKLIAIIDHHKV 91
>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase,
binuclear metal centre, hydrolas; 1.50A {Streptococcus
gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A
Length = 310
Score = 55.6 bits (134), Expect = 3e-10
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 13/114 (11%)
Query: 29 VVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLE 88
+V G+++ D D+ S+ +AY + E + L +
Sbjct: 4 LVFGHQNPDSDAIGSSYAFAYLA-----REAYGLDTEAVALGEPNEETAFVLDYFGVAAP 58
Query: 89 NLIFRDSINLEQLSQSGKLKVTLVDHHVLANQDKFLKPY-VIEILDHRPVSPSE 141
+I G +V L DH+ + V ++DH V+ E
Sbjct: 59 RVITSAKAE-------GAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFE 105
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex,
hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP:
c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Length = 309
Score = 51.0 bits (122), Expect = 1e-08
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 29 VVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENSICLE 88
++ G+++ D D+ SAI YA L P + + E Y L
Sbjct: 5 LIFGHQNPDTDTICSAIAYADLK------NKLGFNAEPVRLGQVNGETQYALDYFKQ--- 55
Query: 89 NLIFRDSINLEQLSQSGKLKVTLVDHHVLA-NQDKFLKPYVIEILDHRPV 137
+S L + + + V LVDH+ + + V+E++DH +
Sbjct: 56 -----ESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRI 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.003
Identities = 27/171 (15%), Positives = 44/171 (25%), Gaps = 55/171 (32%)
Query: 4 NLSIADFLTQSKHLSENPSPCDTIHVVLGNESCDLDSAVSAILYAYFL----------VC 53
+ DFL S T H+ L + S L L +L V
Sbjct: 274 FKQVTDFL----------SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 54 NGDMRVLPMLNIPQKQLPIKTEVVYFLQEN--------SICLENL-------------IF 92
+ R L ++ + + + N L L +F
Sbjct: 324 TTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 93 RDSIN-----LEQL-SQSGKLKVTLVDHHV----LANQDKFLKPYVIEILD 133
S + L + K V +V + + L + K I I
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTISIPS 430
Score = 35.2 bits (80), Expect = 0.005
Identities = 29/142 (20%), Positives = 42/142 (29%), Gaps = 40/142 (28%)
Query: 31 LGNESCDLDSAVSAILYA--YFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFLQENS--IC 86
L N C+ V +L Y + N R NI + I+ E+ L+ C
Sbjct: 189 LKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 87 LENLI------------F----------RDSINLEQLSQSGKLKVTLVDHHVLANQDKFL 124
L L+ F R + LS + ++L H
Sbjct: 247 L--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-----SMTLT 299
Query: 125 KPYVIEI----LDHRPVS-PSE 141
V + LD RP P E
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPRE 321
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.023
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 26/64 (40%)
Query: 61 PMLNI---PQKQLPIKTEVVYFLQENSICLENLIFRDSINLEQLSQSGKLKVTLV---DH 114
PML+I Q+Q +++ + + N L +++++LV +
Sbjct: 337 PMLSISNLTQEQ-----------------VQDYV--NKTN-SHLPAGKQVEISLVNGAKN 376
Query: 115 HVLA 118
V++
Sbjct: 377 LVVS 380
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding,
hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Length = 188
Score = 30.8 bits (70), Expect = 0.10
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 22/114 (19%)
Query: 25 DTIHVVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYF---LQ 81
+ I ++ G+++ D D+ SAI YA +L E V
Sbjct: 2 EKI-LIFGHQNPDTDTICSAIAYADLK----------------NKLGFNAEPVRLGQVNG 44
Query: 82 ENSICLENLIFRDSINLEQLSQSGKLKVTLVDHHVLA-NQDKFLKPYVIEILDH 134
E L+ +S L + + + V LVDH+ + + V+E++DH
Sbjct: 45 ETQYALDYFKQ-ESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDH 97
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle,
structural genom structure 2 function project, S2F,
unknown function; 1.80A {Escherichia coli}
Length = 266
Score = 28.2 bits (62), Expect = 0.82
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 7 IADFLTQSKHLSENPSPCDTIHVVLGN 33
I +L Q E P D + ++ GN
Sbjct: 20 IGQWLAQDDFSGEVPYQADCV-ILAGN 45
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein
fermentation; 2.50A {Acidaminococcus fermentans} SCOP:
c.124.1.2
Length = 317
Score = 27.8 bits (62), Expect = 1.4
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 88 ENLIFRDSINLEQLSQSGKLKVTLVDHHVLANQ 120
+ + S + ++GKL + V+
Sbjct: 76 NSGVTNVSRRFRKWFEAGKLTMEDYSQDVIYMM 108
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme,
oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus
subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A*
2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Length = 363
Score = 26.8 bits (59), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 96 INLEQLSQSGKLKVTLVDHHVLANQDKFLK 125
+N L K V++VDHH A+Q F +
Sbjct: 284 LNKAVLYSYKKQGVSIVDHHTAASQ--FKR 311
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET:
ARG HEM; 3.20A {Geobacillus stearothermophilus}
Length = 375
Score = 26.4 bits (58), Expect = 3.4
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 96 INLEQLSQSGKLKVTLVDHHVLANQDKFLK 125
+N+ L K V++VDHH A Q F
Sbjct: 289 LNIAVLYSYKKAGVSIVDHHTAARQ--FQL 316
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme,
dimerization, inhibitor, NOS, oxidoreductase; HET: HEM
342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A*
2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A*
1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A*
1dwx_A* 1n2n_A* 1qw4_A* ...
Length = 389
Score = 26.4 bits (58), Expect = 3.6
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 96 INLEQLSQSGKLKVTLVDHHVLANQDKFLK 125
IN+ L K VT++DHH + F+K
Sbjct: 299 INVAVLHSFQKQNVTIMDHHTASES--FMK 326
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 25.8 bits (57), Expect = 4.0
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 104 SGKLKVTLVDHHVLANQDKFLK--PYVI 129
G L+V LV L + D PYV
Sbjct: 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQ 36
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn
oxidoreductase, oxidoreductase-oxidoreductase inhibitor
COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} PDB:
2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A*
3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A*
3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Length = 422
Score = 26.4 bits (58), Expect = 4.2
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 96 INLEQLSQSGKLKVTLVDHHVLANQDKFLK 125
IN+ L KVT+VDHH F+K
Sbjct: 337 INIAVLYSFQSDKVTIVDHHSATES--FIK 364
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin,
oxido calmodulin-binding, FAD, FMN, iron, metal-binding,
NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus
musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A*
3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A*
3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A*
1m8h_A* 1m8i_A* 1m9t_A* ...
Length = 433
Score = 26.4 bits (58), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 96 INLEQLSQSGKLKVTLVDHHVLANQDKFLK 125
IN+ L K VT++DHH + F+K
Sbjct: 347 INVAVLHSFQKQNVTIMDHHTASES--FMK 374
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA,
seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A
{Staphylococcus aureus} SCOP: d.174.1.1
Length = 347
Score = 26.0 bits (57), Expect = 4.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 96 INLEQLSQSGKLKVTLVDHHVLANQDKFLK 125
+N K V++VDH A Q F
Sbjct: 272 LNYAVYHSFKKEGVSIVDHLTAAKQ--FEL 299
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 25.6 bits (56), Expect = 5.0
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 99 EQLSQSGKLKVTLVDHHVLANQDKFLK--PYVIEILDHR 135
L+ +L++T++ + N+ + PYV +D +
Sbjct: 30 GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQ 68
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold,
oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP:
d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A*
1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A*
1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A*
1nse_A* ...
Length = 444
Score = 25.7 bits (56), Expect = 7.5
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 96 INLEQLSQSGKLKVTLVDHHVLANQDKFLK 125
INL L KVT+VDHH F+K
Sbjct: 366 INLAVLHSFQLAKVTIVDHHAATVS--FMK 393
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.397
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,031,443
Number of extensions: 105764
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 24
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)