RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13585
         (142 letters)



>d1wpna_ c.107.1.1 (A:) Manganese-dependent inorganic
           pyrophosphatase (family II) {Bacillus subtilis [TaxId:
           1423]}
          Length = 187

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 19/113 (16%)

Query: 29  VVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFL---QENSI 85
           ++ G+++ D D+  SAI YA                    +L    E V       E   
Sbjct: 4   LIFGHQNPDTDTICSAIAYADLK----------------NKLGFNAEPVRLGQVNGETQY 47

Query: 86  CLENLIFRDSINLEQLSQSGKLKVTLVDHHVLANQDKFLKPYVIEILDHRPVS 138
            L+         +E  +      + +  +    +     +  V+E++DH  ++
Sbjct: 48  ALDYFKQESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIA 100


>d1k20a_ c.107.1.1 (A:) Manganese-dependent inorganic
           pyrophosphatase (family II) {Streptococcus gordonii
           [TaxId: 1302]}
          Length = 310

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 19/112 (16%)

Query: 29  VVLGNESCDLDSAVSAILYAYFLVCNGDMRVLPMLNIPQKQLPIKTEVVYFL---QENSI 85
           +V G+++ D D+  S+  +AY                 ++   + TE V      +E + 
Sbjct: 4   LVFGHQNPDSDAIGSSYAFAYLA---------------REAYGLDTEAVALGEPNEETAF 48

Query: 86  CLENLIFRDSINLEQLSQSGKLKVTLVDHHVLA-NQDKFLKPYVIEILDHRP 136
            L+         +      G  +V L DH+    +     +  V  ++DH  
Sbjct: 49  VLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHR 100


>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 279

 Score = 27.2 bits (60), Expect = 0.78
 Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 71  PIKTEVVYFLQENSICLENLIFRDSINLEQLSQSGKLKVTLV--DHHVLANQDKFLKPYV 128
             + +    LQE+++  +     D + L+ + ++G+L    +  DH  L   +++   ++
Sbjct: 222 SGQAKETIPLQESTLYTQ-----DRLGLKAMDKAGQLVFLALEGDH--LQLSEEWFYAHI 274

Query: 129 IEILD 133
           I  L+
Sbjct: 275 IPFLE 279


>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score = 25.1 bits (55), Expect = 3.6
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)

Query: 106 KLKVTLVDHHVLANQDKFLK 125
             KVT+VDHH       F+K
Sbjct: 345 SDKVTIVDHHSATES--FIK 362


>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 421

 Score = 25.1 bits (55), Expect = 3.9
 Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 2/18 (11%)

Query: 108 KVTLVDHHVLANQDKFLK 125
            VT++DHH  +    F+K
Sbjct: 348 NVTIMDHHTASES--FMK 363


>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Bacillus subtilis [TaxId: 1423]}
          Length = 363

 Score = 25.1 bits (55), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 2/18 (11%)

Query: 108 KVTLVDHHVLANQDKFLK 125
            V++VDHH  A+Q  F +
Sbjct: 296 GVSIVDHHTAASQ--FKR 311


>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 133

 Score = 24.3 bits (52), Expect = 4.6
 Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 101 LSQSGKLKVTLVDHHVLANQDKFLK--PYVIEILDHRPVSPS 140
           L+   +L++T++   +  N+  +    PYV   +D +     
Sbjct: 2   LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE 43


>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 416

 Score = 24.7 bits (54), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 2/18 (11%)

Query: 108 KVTLVDHHVLANQDKFLK 125
           KVT+VDHH       F+K
Sbjct: 350 KVTIVDHHAATVS--FMK 365


>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 278

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 14 SKHLSENPSPCDTIHVVLGN 33
          S+H S++     T+HV  GN
Sbjct: 74 SRHSSKDGRKIFTVHVS-GN 92


>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 346

 Score = 24.7 bits (54), Expect = 5.2
 Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 2/18 (11%)

Query: 108 KVTLVDHHVLANQDKFLK 125
            V++VDH   A Q  F  
Sbjct: 283 GVSIVDHLTAAKQ--FEL 298


>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 143

 Score = 23.6 bits (50), Expect = 8.0
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 96  INLEQLSQSGKLKVTLVDHHVLANQDKFLK--PYVIEIL 132
            +L+   Q+ +L V ++    L   D      PYV   L
Sbjct: 25  YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFL 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,510
Number of extensions: 20276
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 17
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)