BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13590
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Y4E|A Chain A, Nmr Structure Of Transmembrane Segment Iv Of The Nhe1
          Isoform Of The Na+H+ EXCHANGER
          Length = 27

 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 21/25 (84%)

Query: 37 LTPDTFFLYMLPPIILDAGYFMPNR 61
          L  D FFL++LPPIILDAGYF+P R
Sbjct: 2  LQSDVFFLFLLPPIILDAGYFLPLR 26


>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
           Reductase
          Length = 500

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 37  LTPDTFFLYMLPPIILDAGYFMPNRLFF 64
           +T D F+   L P+ ++AG  + +RLF 
Sbjct: 343 VTEDIFYNVQLTPVAINAGRLLADRLFL 370


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.334    0.150    0.483 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,191,009
Number of Sequences: 62578
Number of extensions: 63892
Number of successful extensions: 141
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 2
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 45 (21.9 bits)