Query psy13590
Match_columns 90
No_of_seqs 114 out of 598
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:06:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4e_A Sodium/hydrogen exchang 99.1 6.7E-12 2.3E-16 62.6 -0.0 26 37-62 2-27 (27)
2 2ju0_B Phosphatidylinositol 4- 33.8 9.5 0.00033 21.0 0.2 23 58-82 27-49 (52)
3 1vf5_F Protein PET M; photosyn 29.2 52 0.0018 16.5 2.5 16 12-27 12-27 (35)
4 2nwl_A GLTPH, glutamate sympor 27.2 1.5E+02 0.0052 22.1 5.9 76 7-82 11-97 (422)
5 1q90_M Cytochrome B6F complex 26.5 61 0.0021 16.7 2.5 16 12-27 13-28 (39)
6 2ls4_A High affinity copper up 20.2 33 0.0011 16.1 0.0 15 13-27 6-20 (26)
7 2llm_A Amyloid beta A4 protein 17.5 41 0.0014 17.7 0.0 29 61-89 10-39 (43)
8 3hd7_A Vesicle-associated memb 9.1 2.9E+02 0.01 16.0 2.9 28 55-82 56-83 (91)
9 1ymm_C MBP peptide, HLA class 9.0 86 0.0029 14.6 0.3 8 61-68 5-12 (26)
10 1ssz_A Pulmonary surfactant-as 8.6 1.2E+02 0.004 14.8 0.7 13 1-13 14-26 (34)
No 1
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=99.11 E-value=6.7e-12 Score=62.62 Aligned_cols=26 Identities=69% Similarity=1.362 Sum_probs=24.3
Q ss_pred cCcchhhhhhhhhHhchhccCCCchH
Q psy13590 37 LTPDTFFLYMLPPIILDAGYFMPNRL 62 (90)
Q Consensus 37 ~~~~~ff~~lLPpiifeag~~l~~~~ 62 (90)
++|++||+++||||||||||+|++|.
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~r~ 27 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPLRX 27 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGGGC
T ss_pred CccceeeeeccCccEeeccccccCCC
Confidence 68999999999999999999999873
No 2
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=33.81 E-value=9.5 Score=20.98 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCchHHhhhHHHHHHHHHHHHHHHH
Q psy13590 58 MPNRLFFDHLGTILLFAVIGTIFNT 82 (90)
Q Consensus 58 l~~~~ff~n~~~Il~~A~~Gt~is~ 82 (90)
-+++.|.||.-|-+.++ |.+.++
T Consensus 27 ~~~~k~~ENv~PalVL~--s~v~sS 49 (52)
T 2ju0_B 27 DKNVKIHENVAPALVLS--SMIMSA 49 (52)
T ss_dssp CTTCCSSCSHHHHHHHH--HHHHHT
T ss_pred cchHHhhccccHHHHHH--HHHHHH
Confidence 44569999999988888 655554
No 3
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=29.25 E-value=52 Score=16.51 Aligned_cols=16 Identities=63% Similarity=0.810 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHH
Q psy13590 12 SCLLIFVGVVIGVLLF 27 (90)
Q Consensus 12 s~~lil~Gl~~G~i~~ 27 (90)
+..++++|+.+|+.+.
T Consensus 12 ~~~LvLvGla~Gf~LL 27 (35)
T 1vf5_F 12 SFGLIFVGWGLGVLLL 27 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4567788999998664
No 4
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=27.24 E-value=1.5e+02 Score=22.14 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=39.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcc----ccccccCcchhhhh---hhhhHhchh---ccC-CCchHHhhhHHHHHHHHH
Q psy13590 7 QIFPESCLLIFVGVVIGVLLFLTTN----IHIHPLTPDTFFLY---MLPPIILDA---GYF-MPNRLFFDHLGTILLFAV 75 (90)
Q Consensus 7 ~~lpes~~lil~Gl~~G~i~~~~~~----~~~~~~~~~~ff~~---lLPpiifea---g~~-l~~~~ff~n~~~Il~~A~ 75 (90)
+....-...+++|+++|.+...... .+..+.-.|+|... ..+|++|-+ |.. ++.|+.-|=.+..+.+..
T Consensus 11 ~l~~~ili~lvlGi~~G~~~~~~~~~~~~~~~~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~ 90 (422)
T 2nwl_A 11 PVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYL 90 (422)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 4455566777778888877632100 01223334565543 478888865 322 433333333344555555
Q ss_pred HHHHHHH
Q psy13590 76 IGTIFNT 82 (90)
Q Consensus 76 ~Gt~is~ 82 (90)
..|.++.
T Consensus 91 ~tt~iA~ 97 (422)
T 2nwl_A 91 LTSAFAV 97 (422)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666654
No 5
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=26.45 E-value=61 Score=16.66 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHH
Q psy13590 12 SCLLIFVGVVIGVLLF 27 (90)
Q Consensus 12 s~~lil~Gl~~G~i~~ 27 (90)
+..++++|+.+|+.+.
T Consensus 13 ~~~L~LvGla~Gf~LL 28 (39)
T 1q90_M 13 MVGMTLVGLAIGFVLL 28 (39)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3467788999998664
No 6
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=20.16 E-value=33 Score=16.09 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy13590 13 CLLIFVGVVIGVLLF 27 (90)
Q Consensus 13 ~~lil~Gl~~G~i~~ 27 (90)
+.++++|..+|..++
T Consensus 6 ~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 6 CIAVAAGAGTGYFLF 20 (26)
Confidence 567788888888764
No 7
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=17.55 E-value=41 Score=17.71 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=20.0
Q ss_pred hHHhhhHHHHHHHHHHHHHHHH-HHHHHhc
Q psy13590 61 RLFFDHLGTILLFAVIGTIFNT-LSIACIE 89 (90)
Q Consensus 61 ~~ff~n~~~Il~~A~~Gt~is~-~~ig~~~ 89 (90)
+++-+|-+++..+++.|+.+.+ ++++..+
T Consensus 10 ~~~~~srga~iGL~v~gVai~~vIVvsl~m 39 (43)
T 2llm_A 10 EDVGSNKGAIIGLMVGGVVIATVIVITLVM 39 (43)
Confidence 4556688889999988876655 4555544
No 8
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=9.13 E-value=2.9e+02 Score=15.99 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=20.4
Q ss_pred ccCCCchHHhhhHHHHHHHHHHHHHHHH
Q psy13590 55 GYFMPNRLFFDHLGTILLFAVIGTIFNT 82 (90)
Q Consensus 55 g~~l~~~~ff~n~~~Il~~A~~Gt~is~ 82 (90)
+=.++++..++|..-.+..++++.++-.
T Consensus 56 A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 56 AAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999987777766655533
No 9
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=8.98 E-value=86 Score=14.63 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=5.7
Q ss_pred hHHhhhHH
Q psy13590 61 RLFFDHLG 68 (90)
Q Consensus 61 ~~ff~n~~ 68 (90)
-+||+|+-
T Consensus 5 VHFFKNiv 12 (26)
T 1ymm_C 5 VHFFKNIV 12 (26)
T ss_pred hhhhhhcc
Confidence 47888864
No 10
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=8.57 E-value=1.2e+02 Score=14.77 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=9.8
Q ss_pred CCCCcccccchhH
Q psy13590 1 MTPRLNQIFPESC 13 (90)
Q Consensus 1 ~~~~~~~~lpes~ 13 (90)
|+||..|.+|+-+
T Consensus 14 ~ipk~grmlpqlv 26 (34)
T 1ssz_A 14 MIPKGGRMLPQLV 26 (34)
T ss_dssp HCSSSCCCCHHHH
T ss_pred HccccchhhHHHH
Confidence 4688888888743
Done!