Query psy13590
Match_columns 90
No_of_seqs 114 out of 598
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 23:06:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13590.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13590hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nwwa1 f.49.1.1 (A:12-416) Pr 10.4 2.3E+02 0.017 18.8 7.0 42 13-54 6-54 (405)
2 d1q90m_ f.23.25.1 (M:) PetM su 10.1 92 0.0067 14.0 2.4 15 13-27 13-27 (34)
3 d1u58a2 d.19.1.1 (A:8-144) Imm 7.1 45 0.0033 20.0 0.0 12 2-13 40-51 (137)
4 d1jb0x_ f.23.20.1 (X:) Subunit 6.4 1.3E+02 0.0098 12.9 1.9 13 63-75 4-16 (29)
5 d1q90g_ f.23.26.1 (G:) PetG su 5.9 1.5E+02 0.011 12.9 1.7 9 17-25 6-14 (30)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 4.9 1.8E+02 0.013 12.6 2.1 12 15-26 13-24 (32)
7 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.8 2.3E+02 0.017 17.4 2.6 34 36-69 110-143 (290)
8 d1e42a2 d.105.1.1 (A:825-937) 4.7 1.2E+02 0.0087 17.2 0.9 17 53-70 4-20 (113)
9 d1yu8x1 a.14.1.1 (X:42-76) Vil 4.7 98 0.0072 14.1 0.4 14 52-65 6-19 (35)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 4.2 2.8E+02 0.02 14.5 2.4 13 14-26 9-21 (158)
No 1
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=10.41 E-value=2.3e+02 Score=18.76 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhcc----ccccccCcchhhhhh---hhhHhchh
Q psy13590 13 CLLIFVGVVIGVLLFLTTN----IHIHPLTPDTFFLYM---LPPIILDA 54 (90)
Q Consensus 13 ~~lil~Gl~~G~i~~~~~~----~~~~~~~~~~ff~~l---LPpiifea 54 (90)
...++.|+++|.+...... ....+.-.|+|...+ .+|++|-+
T Consensus 6 li~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~s 54 (405)
T d2nwwa1 6 LIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFAS 54 (405)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888887642211 112333356666544 67888866
No 2
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.14 E-value=92 Score=13.98 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy13590 13 CLLIFVGVVIGVLLF 27 (90)
Q Consensus 13 ~~lil~Gl~~G~i~~ 27 (90)
+...++|+.+|+++.
T Consensus 13 ig~tl~glaigfvll 27 (34)
T d1q90m_ 13 VGMTLVGLAIGFVLL 27 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhe
Confidence 344567888888653
No 3
>d1u58a2 d.19.1.1 (A:8-144) Immunomodulatory protein m144, alpha-1 and alpha-2 domains {Murine cytomegalovirus [TaxId: 10366]}
Probab=7.14 E-value=45 Score=19.95 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=8.5
Q ss_pred CCCcccccchhH
Q psy13590 2 TPRLNQIFPESC 13 (90)
Q Consensus 2 ~~~~~~~lpes~ 13 (90)
+|++.+|+|++=
T Consensus 40 iH~~~~Wl~~~~ 51 (137)
T d1u58a2 40 THGIGRWVNASH 51 (137)
T ss_dssp EEECSSSCCHHH
T ss_pred eeeeeEeccccc
Confidence 477778888753
No 4
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=6.45 E-value=1.3e+02 Score=12.87 Aligned_cols=13 Identities=31% Similarity=0.546 Sum_probs=8.8
Q ss_pred HhhhHHHHHHHHH
Q psy13590 63 FFDHLGTILLFAV 75 (90)
Q Consensus 63 ff~n~~~Il~~A~ 75 (90)
-||.+...+++|+
T Consensus 4 ~frt~wa~lllai 16 (29)
T d1jb0x_ 4 AFRTFWAVLLLAI 16 (29)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3677777777774
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.90 E-value=1.5e+02 Score=12.93 Aligned_cols=9 Identities=33% Similarity=1.040 Sum_probs=5.9
Q ss_pred HHHHHHHHH
Q psy13590 17 FVGVVIGVL 25 (90)
Q Consensus 17 l~Gl~~G~i 25 (90)
+.|+++|.+
T Consensus 6 l~GivlGli 14 (30)
T d1q90g_ 6 LCGIVLGLV 14 (30)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHHhhH
Confidence 457777765
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.91 E-value=1.8e+02 Score=12.63 Aligned_cols=12 Identities=25% Similarity=1.002 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHH
Q psy13590 15 LIFVGVVIGVLL 26 (90)
Q Consensus 15 lil~Gl~~G~i~ 26 (90)
+...|+.+|.+.
T Consensus 13 alffgiavgiif 24 (32)
T d2e74e1 13 ALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhee
Confidence 445688888764
No 7
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.84 E-value=2.3e+02 Score=17.42 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=13.3
Q ss_pred ccCcchhhhhhhhhHhchhccCCCchHHhhhHHH
Q psy13590 36 PLTPDTFFLYMLPPIILDAGYFMPNRLFFDHLGT 69 (90)
Q Consensus 36 ~~~~~~ff~~lLPpiifeag~~l~~~~ff~n~~~ 69 (90)
+...-.....+.|.++-.....+....++.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~P~~v~~i~~~~~~~~~g~ 143 (290)
T d2r6gg1 110 PGKATLLKGMLIFQMFPAVLSLVALYALFDRLGE 143 (290)
T ss_dssp TTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccchhheeehhhcccccCC
Confidence 3333333344444333322222333445555443
No 8
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.72 E-value=1.2e+02 Score=17.24 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=12.8
Q ss_pred hhccCCCchHHhhhHHHH
Q psy13590 53 DAGYFMPNRLFFDHLGTI 70 (90)
Q Consensus 53 eag~~l~~~~ff~n~~~I 70 (90)
|+| .|+++.|.+.|..|
T Consensus 4 EdG-~mdr~~Fl~~Wk~I 20 (113)
T d1e42a2 4 EDG-KMERQVFLATWKDI 20 (113)
T ss_dssp SSC-CCCHHHHHHHHHHS
T ss_pred ccC-eeCHHHHHHHHhcC
Confidence 555 78899888887654
No 9
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.68 E-value=98 Score=14.08 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=9.1
Q ss_pred chhccCCCchHHhh
Q psy13590 52 LDAGYFMPNRLFFD 65 (90)
Q Consensus 52 feag~~l~~~~ff~ 65 (90)
|+..|.|.+.+|.+
T Consensus 6 F~~vfgmsr~eF~~ 19 (35)
T d1yu8x1 6 FKAVFGMTRSAFAN 19 (35)
T ss_dssp HHHHHSSCHHHHHT
T ss_pred HHHHHCCCHHHHHH
Confidence 56667777776643
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=4.17 E-value=2.8e+02 Score=14.49 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q psy13590 14 LLIFVGVVIGVLL 26 (90)
Q Consensus 14 ~lil~Gl~~G~i~ 26 (90)
.+.++|++.+..+
T Consensus 9 ViaIIgILaaia~ 21 (158)
T d2pila_ 9 VIAIVGILAAVAL 21 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455676666543
Done!