RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13590
         (90 letters)



>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane,
          membrane protein; HET: HSL; NMR {Homo sapiens}
          Length = 27

 Score = 36.7 bits (85), Expect = 3e-05
 Identities = 18/25 (72%), Positives = 21/25 (84%)

Query: 37 LTPDTFFLYMLPPIILDAGYFMPNR 61
          L  D FFL++LPPIILDAGYF+P R
Sbjct: 2  LQSDVFFLFLLPPIILDAGYFLPLR 26


>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite
          reductase, NRFA, NAPC/NIRT family, membrane complex,
          oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio
          vulgaris} PDB: 2vr0_C*
          Length = 159

 Score = 26.3 bits (57), Expect = 1.5
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 1  MTPRLNQIFPESCLLIFVGVVIGVLLFLTTNIHIHPLTPDTF 42
          M+   ++  P    L+  G  +GV+   T    +       F
Sbjct: 1  MSEEKSRNGPARLKLVLGGATLGVVALATVAFGMKYTDQRPF 42


>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite
          oxidase, molybdopterin, C-type cytochrome, heme,
          electron transport; HET: MSS HEC; 1.8A {Starkeya
          novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A*
          Length = 373

 Score = 25.4 bits (56), Expect = 2.7
 Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 48 PPIILDAGYFMPNRLFFD--HLGTI 70
          P  + D G   PN  FF   HL  I
Sbjct: 37 PFSVFDEGLITPNDAFFVRYHLAGI 61


>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex,
          SOX system, sulfa oxidation, molybdenum cofactor, heme,
          electron transfer; HET: MTE HEC; 1.33A {Paracoccus
          pantotrophus}
          Length = 390

 Score = 25.1 bits (55), Expect = 3.7
 Identities = 8/41 (19%), Positives = 10/41 (24%), Gaps = 3/41 (7%)

Query: 33 HIHPLTPDT-FFLYMLPPIILDAGYFMPNRLFF--DHLGTI 70
                 ++        PI    G   P    F   H G I
Sbjct: 40 QYVEWLTESPVSSINFTPIHALEGTITPQGCAFERHHSGAI 80


>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP:
           c.1.8.3
          Length = 306

 Score = 24.0 bits (51), Expect = 8.2
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 5   LNQIFPESCLLIFVGVVIGVLLFLTTNIHIHPLTPDTFFLYMLPP--IILDAGYFMPNRL 62
           +   FP S  +     +  V   L +           +F Y   P  I L+   F P   
Sbjct: 133 VANSFPPSAGVFKNAYMTDVARLLASTGAPLLANVYPYFAYRDNPGSISLNYATFQPGTT 192

Query: 63  FFDH 66
             D 
Sbjct: 193 VRDQ 196


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.337    0.154    0.487 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,430,968
Number of extensions: 74445
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 9
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (23.4 bits)