RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13590
         (90 letters)



>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 144

 Score = 27.0 bits (60), Expect = 0.23
 Identities = 5/27 (18%), Positives = 10/27 (37%)

Query: 16  IFVGVVIGVLLFLTTNIHIHPLTPDTF 42
               +    LL +    +++   P TF
Sbjct: 82  AMFFIGFTALLLIWEKHYVYGPIPHTF 108


>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 272

 Score = 23.5 bits (50), Expect = 5.0
 Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 6/40 (15%)

Query: 48  PPIILDAGYFMPNRLFFDH------LGTILLFAVIGTIFN 81
           PP +L   Y   N L          +G  +L   +     
Sbjct: 63  PPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQATG 102


>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic
          domain {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 249

 Score = 22.8 bits (48), Expect = 7.4
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 8/37 (21%)

Query: 35 HPLTPDTFFLYMLPPIILDAGYFMPNRLFF--DHLGT 69
           P   +       P  +L   +  PN LFF  +HL  
Sbjct: 19 KPFNAEP------PAELLAERFLTPNELFFTRNHLPV 49


>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli
           [TaxId: 562]}
          Length = 416

 Score = 23.2 bits (50), Expect = 7.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 50  IILDAGYFMPNRLFFDHLGTILLF 73
           + LDAG+F P  +  D +   +L+
Sbjct: 254 LCLDAGHFHPTEVISDKISAAMLY 277


>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA
           {Escherichia coli [TaxId: 562]}
          Length = 511

 Score = 23.1 bits (49), Expect = 7.5
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 38  TPDTFFLYMLPPIILDAGYFMPNR 61
             D      LP +  +  Y+M   
Sbjct: 186 EGDAALKQYLPQMQKEYAYWMDGV 209


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 22.9 bits (48), Expect = 8.8
 Identities = 3/22 (13%), Positives = 7/22 (31%), Gaps = 3/22 (13%)

Query: 41  TFFLYMLPPIILDAGY---FMP 59
            F       ++   G+   F+ 
Sbjct: 122 NFLESSFLGLLDIQGFLLEFIT 143


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.337    0.154    0.487 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,340
Number of extensions: 14539
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 14
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 47 (22.4 bits)