BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13591
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8AWY9|HXB7A_DANRE Homeobox protein Hox-B7a OS=Danio rerio GN=hoxb7a PE=2 SV=1
Length = 227
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 65/84 (77%), Gaps = 9/84 (10%)
Query: 252 EDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIA 311
E+ +YPWM+S TG KR RQTYSRYQTLELEKEFH+N+YLSR+RRIEIA
Sbjct: 129 ENNLRIYPWMRS---------TGADRKRGRQTYSRYQTLELEKEFHFNRYLSRRRRIEIA 179
Query: 312 HELQLTERQIKIWFQNRRMKLKKE 335
H L LTERQIKIWFQNRRMK KKE
Sbjct: 180 HALCLTERQIKIWFQNRRMKWKKE 203
>sp|P04476|HXB7B_XENLA Homeobox protein Hox-B7-B OS=Xenopus laevis GN=hoxb7-b PE=2 SV=1
Length = 220
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 71/97 (73%), Gaps = 11/97 (11%)
Query: 241 CSVSSQQDHEGEDGATL--YPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHY 298
C+ + Q+D E + A L YPWM+S G KR RQTY+RYQTLELEKEFH+
Sbjct: 109 CTKAEQRDSELHNEANLRIYPWMRS---------AGSDRKRGRQTYTRYQTLELEKEFHF 159
Query: 299 NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
N+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 160 NRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKE 196
>sp|A1YFA5|HXB7_GORGO Homeobox protein Hox-B7 OS=Gorilla gorilla gorilla GN=HOXB7 PE=3
SV=1
Length = 217
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 73/108 (67%), Gaps = 11/108 (10%)
Query: 230 NGVGSPDVQDSCSVSSQQDHE--GEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRY 287
+GV D + Q+D + E +YPWM+S +G KR RQTY+RY
Sbjct: 97 SGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS---------SGTDRKRGRQTYTRY 147
Query: 288 QTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
QTLELEKEFHYN+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 148 QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 195
>sp|Q9TT89|HXB7_BOVIN Homeobox protein Hox-B7 OS=Bos taurus GN=HOXB7 PE=2 SV=1
Length = 217
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 73/108 (67%), Gaps = 11/108 (10%)
Query: 230 NGVGSPDVQDSCSVSSQQDHE--GEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRY 287
+GV D + Q+D + E +YPWM+S +G KR RQTY+RY
Sbjct: 97 SGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS---------SGTDRKRGRQTYTRY 147
Query: 288 QTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
QTLELEKEFHYN+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 148 QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 195
>sp|P02833|ANTP_DROME Homeotic protein antennapedia OS=Drosophila melanogaster GN=Antp
PE=1 SV=1
Length = 378
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 79/127 (62%), Gaps = 12/127 (9%)
Query: 209 GKPPGFNMDRNGNPVGLRADSNGVGSPDVQDSCSVSSQQDHEGEDGATLYPWMKSNQDAS 268
G PP M + P + G +P Q+ S SS + LYPWM+S
Sbjct: 241 GAPPQGMMHQGQGPPQMHQGHPGQHTPPSQNPNSQSSGMP------SPLYPWMRSQFG-- 292
Query: 269 YSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNR 328
C+ KR RQTY+RYQTLELEKEFH+N+YL+R+RRIEIAH L LTERQIKIWFQNR
Sbjct: 293 -KCQE---RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 348
Query: 329 RMKLKKE 335
RMK KKE
Sbjct: 349 RMKWKKE 355
>sp|P09629|HXB7_HUMAN Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 PE=1 SV=4
Length = 217
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 73/108 (67%), Gaps = 11/108 (10%)
Query: 230 NGVGSPDVQDSCSVSSQQDHE--GEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRY 287
+GV D + Q+D + E +YPWM+S +G KR RQTY+RY
Sbjct: 97 SGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS---------SGTDRKRGRQTYTRY 147
Query: 288 QTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
QTLELEKEFHYN+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 148 QTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKE 195
>sp|P18864|HXB7_RAT Homeobox protein Hox-B7 OS=Rattus norvegicus GN=Hoxb7 PE=2 SV=2
Length = 219
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 73/108 (67%), Gaps = 11/108 (10%)
Query: 230 NGVGSPDVQDSCSVSSQQDHE--GEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRY 287
+GV D + Q+D + E +YPWM+S +G KR RQTY+RY
Sbjct: 97 SGVCPGDPAKAAGAKEQRDSDLAAESNFRIYPWMRS---------SGTERKRGRQTYTRY 147
Query: 288 QTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
QTLELEKEFHYN+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 148 QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 195
>sp|P09024|HXB7_MOUSE Homeobox protein Hox-B7 OS=Mus musculus GN=Hoxb7 PE=2 SV=2
Length = 217
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 73/108 (67%), Gaps = 11/108 (10%)
Query: 230 NGVGSPDVQDSCSVSSQQDHE--GEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRY 287
+GV D + Q+D + E +YPWM+S +G KR RQTY+RY
Sbjct: 97 SGVCPGDPAKAAGAKEQRDSDLAAESNFRIYPWMRS---------SGPDRKRGRQTYTRY 147
Query: 288 QTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
QTLELEKEFHYN+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 148 QTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKE 195
>sp|A2T7F3|HXA7_PANTR Homeobox protein Hox-A7 OS=Pan troglodytes GN=HOXA7 PE=3 SV=1
Length = 230
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 79/127 (62%), Gaps = 13/127 (10%)
Query: 213 GFNMDRNGNPVGLRADSN--GVGSPDVQDSCSVSSQQDHEGEDGA--TLYPWMKSNQDAS 268
G D GN D N G+ S + +C + + G A +YPWM+S
Sbjct: 71 GLGADAYGNLPCASYDQNIPGLCSDLAKGACDKADEGALHGAAEANFRIYPWMRS----- 125
Query: 269 YSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNR 328
+G KR RQTY+RYQTLELEKEFH+N+YL+R+RRIEIAH L LTERQIKIWFQNR
Sbjct: 126 ----SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181
Query: 329 RMKLKKE 335
RMK KKE
Sbjct: 182 RMKWKKE 188
>sp|P31268|HXA7_HUMAN Homeobox protein Hox-A7 OS=Homo sapiens GN=HOXA7 PE=2 SV=3
Length = 230
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 79/127 (62%), Gaps = 13/127 (10%)
Query: 213 GFNMDRNGNPVGLRADSN--GVGSPDVQDSCSVSSQQDHEGEDGA--TLYPWMKSNQDAS 268
G D GN D N G+ S + +C + + G A +YPWM+S
Sbjct: 71 GLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYPWMRS----- 125
Query: 269 YSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNR 328
+G KR RQTY+RYQTLELEKEFH+N+YL+R+RRIEIAH L LTERQIKIWFQNR
Sbjct: 126 ----SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181
Query: 329 RMKLKKE 335
RMK KKE
Sbjct: 182 RMKWKKE 188
>sp|Q91771|HXB7A_XENLA Homeobox protein Hox-B7-A OS=Xenopus laevis GN=hoxb7-a PE=2 SV=1
Length = 220
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 75/106 (70%), Gaps = 12/106 (11%)
Query: 232 VGSPDVQDSCSVSSQQDHEGEDGATL--YPWMKSNQDASYSCKTGGGNKRSRQTYSRYQT 289
G P Q+S + + Q++ E + A L YPWM+S G KR RQTY+RYQT
Sbjct: 103 AGDPTKQNS-AKAEQRESELHNEANLRIYPWMRS---------AGADRKRGRQTYTRYQT 152
Query: 290 LELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
LELEKEFH+N+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 153 LELEKEFHFNRYLTRRRRIEIAHVLCLTERQIKIWFQNRRMKWKKE 198
>sp|P09077|SCR_DROME Homeotic protein Sex combs reduced OS=Drosophila melanogaster
GN=Scr PE=1 SV=5
Length = 417
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 62/79 (78%)
Query: 257 LYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQL 316
+YPWMK + + G KR R +Y+RYQTLELEKEFH+N+YL+R+RRIEIAH L L
Sbjct: 304 IYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 363
Query: 317 TERQIKIWFQNRRMKLKKE 335
TERQIKIWFQNRRMK KKE
Sbjct: 364 TERQIKIWFQNRRMKWKKE 382
>sp|P02830|HXA7_MOUSE Homeobox protein Hox-A7 OS=Mus musculus GN=Hoxa7 PE=2 SV=2
Length = 229
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 11/107 (10%)
Query: 231 GVGSPDVQDSCSVSSQQDHEGEDGAT--LYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQ 288
G+ S + +C + + G A+ +YPWM+S +G KR RQTY+RYQ
Sbjct: 90 GLCSDLAKGACDKADEGVLHGPAEASFRIYPWMRS---------SGPDRKRGRQTYTRYQ 140
Query: 289 TLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
TLELEKEFH+N+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 141 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 187
>sp|P09023|HXB6_MOUSE Homeobox protein Hox-B6 OS=Mus musculus GN=Hoxb6 PE=2 SV=2
Length = 224
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 257 LYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQL 316
+YPWM+ ++ S G +R RQTY+RYQTLELEKEFHYN+YL+R+RRIEIAH L L
Sbjct: 127 VYPWMQ-RMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCL 185
Query: 317 TERQIKIWFQNRRMKLKKEKIVM 339
TERQIKIWFQNRRMK KKE ++
Sbjct: 186 TERQIKIWFQNRRMKWKKESKLL 208
>sp|Q24645|ANTP_DROSU Homeotic protein antennapedia OS=Drosophila subobscura GN=Antp PE=3
SV=1
Length = 394
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 64/81 (79%), Gaps = 6/81 (7%)
Query: 255 ATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHEL 314
+ LYPWM+S C+ KR RQTY+RYQTLELEKEFH+N+YL+R+RRIEIAH L
Sbjct: 297 SPLYPWMRSQFG---KCQE---RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL 350
Query: 315 QLTERQIKIWFQNRRMKLKKE 335
LTERQIKIWFQNRRMK KKE
Sbjct: 351 CLTERQIKIWFQNRRMKWKKE 371
>sp|P17509|HXB6_HUMAN Homeobox protein Hox-B6 OS=Homo sapiens GN=HOXB6 PE=1 SV=4
Length = 224
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 257 LYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQL 316
+YPWM+ ++ S G +R RQTY+RYQTLELEKEFHYN+YL+R+RRIEIAH L L
Sbjct: 127 VYPWMQ-RMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCL 185
Query: 317 TERQIKIWFQNRRMKLKKEKIVM 339
TERQIKIWFQNRRMK KKE ++
Sbjct: 186 TERQIKIWFQNRRMKWKKESKLL 208
>sp|Q90VZ9|HXA7_CHICK Homeobox protein Hox-A7 OS=Gallus gallus GN=HOXA7 PE=2 SV=1
Length = 219
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 65/86 (75%), Gaps = 9/86 (10%)
Query: 250 EGEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIE 309
+ E +YPWM+S +G KR RQTY+RYQTLELEKEFH+N+YL+R+RRIE
Sbjct: 111 QAEANFRIYPWMRS---------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 161
Query: 310 IAHELQLTERQIKIWFQNRRMKLKKE 335
IAH L LTERQIKIWFQNRRMK KKE
Sbjct: 162 IAHALCLTERQIKIWFQNRRMKWKKE 187
>sp|P09071|HXA7_XENLA Homeobox protein Hox-A7 OS=Xenopus laevis GN=hoxa7 PE=2 SV=1
Length = 209
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 66/87 (75%), Gaps = 9/87 (10%)
Query: 249 HEGEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRI 308
H+ + +YPWM+S +G KR RQTY+RYQTLELEKEFH+N+YL+R+RRI
Sbjct: 103 HQPDSHFRIYPWMRS---------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRI 153
Query: 309 EIAHELQLTERQIKIWFQNRRMKLKKE 335
EIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 154 EIAHALCLTERQIKIWFQNRRMKWKKE 180
>sp|Q9PWD2|HXA4_MORSA Homeobox protein Hox-A4 OS=Morone saxatilis GN=hoxa4 PE=3 SV=1
Length = 248
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 9/117 (7%)
Query: 225 LRADSNGVGSPDVQDSCSVSSQQDHEGEDG--ATLYPWMK----SNQDASYSCKTGGGNK 278
L A +G + CS++S+ G +YPWMK S +ASY TGG K
Sbjct: 94 LTAAPDGGAGANASKDCSLASEVYPGVAKGKEPVVYPWMKKVHVSTVNASY---TGGVPK 150
Query: 279 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
RSR Y+R Q LELEKEFH+N+YL+R+RR+EIAH + L+ERQ+KIWFQNRRMK KKE
Sbjct: 151 RSRTAYTRQQALELEKEFHFNRYLTRRRRVEIAHTMCLSERQVKIWFQNRRMKWKKE 207
>sp|Q1KKX1|HXB6B_TAKRU Homeobox protein Hox-B6b OS=Takifugu rubripes GN=hoxb6b PE=3 SV=1
Length = 233
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 242 SVSSQQDHEGEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKY 301
SVS + + +YPWM+ +A + G +R RQTY+RYQTLELEKEFH+N+Y
Sbjct: 121 SVSMGSSIDDKSSTLIYPWMQ-RMNACSAGPFGNSGRRGRQTYTRYQTLELEKEFHFNRY 179
Query: 302 LSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEKIVM 339
L+R+RRIEI+H L LTERQIKIWFQNRRMK KKE ++
Sbjct: 180 LTRRRRIEISHALCLTERQIKIWFQNRRMKWKKENKLL 217
>sp|Q9IA25|HXA7_HETFR Homeobox protein Hox-A7 OS=Heterodontus francisci GN=HOXA7 PE=3
SV=1
Length = 208
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 64/86 (74%), Gaps = 9/86 (10%)
Query: 250 EGEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIE 309
+ E +YPWM++ G KR RQTY+RYQTLELEKEFH+N+YL+R+RRIE
Sbjct: 117 QAESNFRIYPWMRN---------AGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 167
Query: 310 IAHELQLTERQIKIWFQNRRMKLKKE 335
IAH L LTERQIKIWFQNRRMK KKE
Sbjct: 168 IAHALCLTERQIKIWFQNRRMKWKKE 193
>sp|P15861|HXB6A_DANRE Homeobox protein Hox-B6a OS=Danio rerio GN=hoxb6a PE=2 SV=1
Length = 228
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 67/88 (76%), Gaps = 6/88 (6%)
Query: 250 EGEDGATLYPWMKSNQDASYSCKTGGGN--KRSRQTYSRYQTLELEKEFHYNKYLSRKRR 307
E + A +YPWM+ SC GN +R RQTY+RYQTLELEKEFH+N+YL+R+RR
Sbjct: 125 EQKPSAPVYPWMQRMN----SCNGTFGNAGRRGRQTYTRYQTLELEKEFHFNRYLTRRRR 180
Query: 308 IEIAHELQLTERQIKIWFQNRRMKLKKE 335
IEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 181 IEIAHALCLTERQIKIWFQNRRMKWKKE 208
>sp|P22574|HXB4A_DANRE Homeobox protein Hox-B4a OS=Danio rerio GN=hoxb4a PE=2 SV=3
Length = 246
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 74/106 (69%), Gaps = 13/106 (12%)
Query: 234 SPDVQDSCSVSSQQDHEGEDGATLYPWMKSNQ----DASYSCKTGGGNKRSRQTYSRYQT 289
+P Q++ +VSS++D +YPWMK +YS GG KRSR Y+R Q
Sbjct: 113 TPTSQNTSTVSSRKD------PVVYPWMKKVHVNIVSPNYS---GGEPKRSRTAYTRQQV 163
Query: 290 LELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
LELEKEFHYN+YL+R+RR+EIAH L L+ERQIKIWFQNRRMK KK+
Sbjct: 164 LELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWFQNRRMKWKKD 209
>sp|Q9IA23|HXA5_HETFR Homeobox protein Hox-A5 OS=Heterodontus francisci GN=HOXA5 PE=3
SV=1
Length = 275
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 75/113 (66%), Gaps = 8/113 (7%)
Query: 230 NGVG-SPDVQDSCSVSSQ--QDHEGEDGAT----LYPWMKSNQDASYSCKTGGGNKRSRQ 282
+GVG SP +D SS G+ A +YPWM+ S+ G KR+R
Sbjct: 147 DGVGTSPGTEDDTPASSDPPSSQNGQSTAQQQPQIYPWMR-KLHISHDSMGGPEGKRART 205
Query: 283 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
Y+RYQTLELEKEFH+N+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KK+
Sbjct: 206 AYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKD 258
>sp|P14840|HXB4_CHICK Homeobox protein Hox-B4 OS=Gallus gallus GN=HOXB4 PE=2 SV=1
Length = 245
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 72/110 (65%), Gaps = 10/110 (9%)
Query: 233 GSPDVQDSCSVSSQQDHEGEDGA---TLYPWMK----SNQDASYSCKTGGGNKRSRQTYS 285
G+P SCS +S +YPWMK S + +YS GG KRSR Y+
Sbjct: 102 GTPSPPPSCSQNSLNQSPSNSSCKEPVVYPWMKKVHVSTVNPNYS---GGEPKRSRTAYT 158
Query: 286 RYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
R Q LELEKEFHYN+YL+R+RR+EIAH L L+ERQIKIWFQNRRMK KK+
Sbjct: 159 RQQVLELEKEFHYNRYLTRRRRVEIAHSLCLSERQIKIWFQNRRMKWKKD 208
>sp|P24061|HXA7_COTJA Homeobox protein Hox-A7 OS=Coturnix coturnix japonica GN=HOXA7 PE=2
SV=1
Length = 242
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 64/90 (71%), Gaps = 9/90 (10%)
Query: 246 QQDHEGEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRK 305
Q G +YPWM+S +G KR RQTY+RYQTLELEKEFH+N+YL+R+
Sbjct: 107 QPAQPGRGQFRIYPWMRS---------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRR 157
Query: 306 RRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
RRIE AH L LTERQIKIWFQNRRMK KKE
Sbjct: 158 RRIEYAHALCLTERQIKIWFQNRRMKWKKE 187
>sp|Q07961|ABDA_TRICA Homeobox protein abdominal-A homolog OS=Tribolium castaneum
GN=ABD-A PE=2 SV=2
Length = 343
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 236 DVQDSCSVSSQQDHEGEDGATLYPWMK-----SNQDASYSCKTGGGNKRSRQTYSRYQTL 290
D +SCS + + YPWM S D G +R RQTY+R+QTL
Sbjct: 170 DPLNSCSQPAAPGGQPIPDIPRYPWMSITDWMSPFDRVVCGPNGCPRRRGRQTYTRFQTL 229
Query: 291 ELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
ELEKEFH+N YL+R+RRIEIAH L LTERQIKIWFQNRRMKLKKE
Sbjct: 230 ELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 274
>sp|Q5YLH5|HXA6_CHICK Homeobox protein Hox-A6 OS=Gallus gallus GN=HOXA6 PE=2 SV=1
Length = 231
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 74/110 (67%), Gaps = 14/110 (12%)
Query: 229 SNGVGSPDVQDSCSVSSQQDHEGED---GATLYPWMKSNQDASYSCKTGGGNKRSRQTYS 285
SNGV S V D EG D + +YPWM+ ++ G +R RQTY+
Sbjct: 113 SNGVQSKIVND----------EGTDRKYTSPVYPWMQ-RMNSCAGTVYGAHGRRGRQTYT 161
Query: 286 RYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
RYQTLELEKEFH+N+YL+R+RRIEIA+ L LTERQIKIWFQNRRMK KKE
Sbjct: 162 RYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 211
>sp|Q1KKY1|HXB8A_TAKRU Homeobox protein Hox-B8a OS=Takifugu rubripes GN=hoxb8a PE=3 SV=1
Length = 282
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 65/104 (62%), Gaps = 18/104 (17%)
Query: 241 CSVSSQQDHEGEDG---------ATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLE 291
C + Q GED L+PWM+ G +R RQTYSRYQTLE
Sbjct: 112 CKLGGAQGLGGEDAEGTEQSPSPTQLFPWMRPQ---------AAGRRRGRQTYSRYQTLE 162
Query: 292 LEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
LEKEF +N YL+RKRRIE++H L LTERQ+KIWFQNRRMK KKE
Sbjct: 163 LEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKE 206
>sp|Q1KKS8|HXD4A_TAKRU Homeobox protein Hox-D4a OS=Takifugu rubripes GN=hoxd4a PE=3 SV=1
Length = 233
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Query: 211 PPGFNMDRNGNPVGLRADSNGVGSPDVQDSCSVSSQQDHEGEDG------ATLYPWMKSN 264
P G D++G P A + V + QQ+ + ++G A +YPWMK
Sbjct: 72 PRGHVHDKSGQPSPFNAQTESGAPVLVAGPRTCGQQQNTKSQNGTQAKQPAVVYPWMKKV 131
Query: 265 QDASYSCK-TGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKI 323
+ + TG KRSR Y+R Q LELEKEFH+N+YL+R+RRIEIAH L L+ERQIKI
Sbjct: 132 HVTTVNPDYTGSEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKI 191
Query: 324 WFQNRRMKLKKE 335
WFQNRRMK K+
Sbjct: 192 WFQNRRMKWTKD 203
>sp|P09019|HXB5_XENLA Homeobox protein Hox-B5 (Fragment) OS=Xenopus laevis GN=hoxb5 PE=2
SV=1
Length = 230
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 16/110 (14%)
Query: 233 GSPD--VQDSCSVSSQQDHEGEDGAT--LYPWMKS---NQDASYSCKTGGGNKRSRQTYS 285
G+P +QD+CS + G DG + ++PWM+ N D + G KR+R Y+
Sbjct: 113 GAPPRALQDNCSPGA----AGTDGQSPQIFPWMRKLHINHDMA-----GPDGKRARTAYT 163
Query: 286 RYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
RYQTLELEKEFH+N+YL+R+RRIEIAH L L+ERQIKIWFQNRRMK KK+
Sbjct: 164 RYQTLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKD 213
>sp|Q9IA24|HXA6_HETFR Homeobox protein Hox-A6 OS=Heterodontus francisci GN=HOXA6 PE=3
SV=1
Length = 229
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 4/102 (3%)
Query: 241 CSVSSQQDHEGED---GATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFH 297
C+ + EG D +YPWM+ ++S S G +R RQTY+R+QTLELEKEFH
Sbjct: 113 CAQNKILSEEGNDRKYSTPIYPWMQ-RMNSSSSSVFGPHGRRGRQTYTRFQTLELEKEFH 171
Query: 298 YNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEKIVM 339
+N+YL+R+RRIEIA+ L LTERQIKIWFQNRRMK KKE ++
Sbjct: 172 FNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLL 213
>sp|Q1KL13|HXA4A_TAKRU Homeobox protein Hox-A4a OS=Takifugu rubripes GN=hoxa4a PE=3 SV=1
Length = 255
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Query: 225 LRADSNGVGSPDVQDSCSVSSQQDHEGEDG--ATLYPWMK----SNQDASYSCKTGGGNK 278
L A +G CS++S+ G +YPWMK +N A Y+ GG K
Sbjct: 94 LSAAPDGGAGAIASKDCSIASEVYPGVAKGKEPVVYPWMKKVHATNITAGYN---GGVPK 150
Query: 279 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
RSR Y+R Q LELEKEFH+N+YL+R+RR+EIAH + L+ERQ+KIWFQNRRMK KKE
Sbjct: 151 RSRTAYTRQQALELEKEFHFNRYLTRRRRVEIAHTMCLSERQVKIWFQNRRMKWKKE 207
>sp|O57374|HXD4A_DANRE Homeobox protein Hox-D4a OS=Danio rerio GN=hoxd4a PE=2 SV=2
Length = 236
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 83/143 (58%), Gaps = 10/143 (6%)
Query: 203 ISEMVDG---KPPGFNMDRNGNPVGLRADSNGVGSPDVQDSCSVSSQQDHEGEDG----- 254
I V G +P G D+ P A + + + S + QQ+ + ++G
Sbjct: 62 ICSTVQGSSVQPRGHVQDQASTPSPFPAQTEQCPAVQISGSRTCGQQQNTKTQNGIPTKQ 121
Query: 255 -ATLYPWMKSNQDASYSCK-TGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAH 312
A +YPWMK + + TG KRSR Y+R Q LELEKEFH+N+YL+R+RRIE AH
Sbjct: 122 PAVVYPWMKKVHVTTVNPDYTGPEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIESAH 181
Query: 313 ELQLTERQIKIWFQNRRMKLKKE 335
L L+ERQIKIWFQNRRMK KK+
Sbjct: 182 TLSLSERQIKIWFQNRRMKWKKD 204
>sp|P31267|HXA6_HUMAN Homeobox protein Hox-A6 OS=Homo sapiens GN=HOXA6 PE=2 SV=2
Length = 233
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 79/116 (68%), Gaps = 14/116 (12%)
Query: 234 SPDVQ---DSCSVSSQQDH-EGED---GATLYPWMK---SNQDASYSCKTGGGNKRSRQT 283
SP+ Q DS S + H EG D + +YPWM+ S A Y G +R RQT
Sbjct: 106 SPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVY----GSHGRRGRQT 161
Query: 284 YSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEKIVM 339
Y+RYQTLELEKEFH+N+YL+R+RRIEIA+ L LTERQIKIWFQNRRMK KKE ++
Sbjct: 162 YTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLI 217
>sp|Q1KKY0|HXB6A_TAKRU Homeobox protein Hox-B6a OS=Takifugu rubripes GN=hoxb6a PE=3 SV=1
Length = 274
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 63/79 (79%), Gaps = 2/79 (2%)
Query: 257 LYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQL 316
+YPWM+ + + G +R RQTY+RYQTLELEKEFH+N+YL+R+RRIEIAH L L
Sbjct: 171 IYPWMQRMNACNGT--FGSPGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 228
Query: 317 TERQIKIWFQNRRMKLKKE 335
TERQIKIWFQNRRMK KKE
Sbjct: 229 TERQIKIWFQNRRMKWKKE 247
>sp|P09070|HXB4_XENLA Homeobox protein Hox-B4 OS=Xenopus laevis GN=hoxb4 PE=2 SV=1
Length = 232
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 4/100 (4%)
Query: 240 SCSV-SSQQDH--EGEDGATLYPWMK-SNQDASYSCKTGGGNKRSRQTYSRYQTLELEKE 295
SCS+ SS+ H E +YPWMK ++ + S + G KRSR Y+R Q LELEKE
Sbjct: 100 SCSLKSSEHKHPDSPEQDPVVYPWMKKAHISKATSTYSDGEAKRSRTAYTRQQVLELEKE 159
Query: 296 FHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
FHYN+YL+R+RR+EIAH L+L+ERQIKIWFQNRRMK KK+
Sbjct: 160 FHYNRYLTRRRRVEIAHTLRLSERQIKIWFQNRRMKWKKD 199
>sp|Q6B3N0|HXA5_CHICK Homeobox protein Hox-A5 OS=Gallus gallus GN=HOXA5 PE=2 SV=1
Length = 270
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 76/114 (66%), Gaps = 9/114 (7%)
Query: 230 NGVG-SPDVQDSCSVSSQQDHEGEDGAT-------LYPWMKSNQDASYSCKTGGGNKRSR 281
+GVG S ++ SS+Q D +T +YPWM+ S+ G KR+R
Sbjct: 141 DGVGTSSGTEEDTPASSEQASAPSDQSTAQPSQPQIYPWMR-KLHISHDNIGGPEGKRAR 199
Query: 282 QTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
Y+RYQTLELEKEFH+N+YL+R+RRIEIAH L L+ERQIKIWFQNRRMK KK+
Sbjct: 200 TAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 253
>sp|Q9IA11|HXD5_HETFR Homeobox protein Hox-D5 OS=Heterodontus francisci GN=HOXD5 PE=3
SV=1
Length = 252
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 64/82 (78%), Gaps = 7/82 (8%)
Query: 257 LYPWMKS---NQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHE 313
+YPWMK NQ+ +G KR+R Y+RYQTLELEKEFHYN+YL+R+RRIEIAH
Sbjct: 158 IYPWMKKMHLNQEG----LSGLEGKRTRTAYTRYQTLELEKEFHYNRYLTRRRRIEIAHA 213
Query: 314 LQLTERQIKIWFQNRRMKLKKE 335
L LTERQIKIWFQNRRMK KK+
Sbjct: 214 LCLTERQIKIWFQNRRMKWKKD 235
>sp|P09080|HMB1_TRIGR Homeobox protein HB1 (Fragment) OS=Tripneustes gratilla PE=2 SV=3
Length = 307
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 61/78 (78%), Gaps = 3/78 (3%)
Query: 258 YPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLT 317
YPWM A + G KR RQTY+RYQTLELEKEFH+N+YL+R+RRIE++H L LT
Sbjct: 173 YPWMPV---AGPNVGLEVGRKRCRQTYTRYQTLELEKEFHFNRYLTRRRRIELSHLLGLT 229
Query: 318 ERQIKIWFQNRRMKLKKE 335
ERQIKIWFQNRRMK KKE
Sbjct: 230 ERQIKIWFQNRRMKYKKE 247
>sp|P13545|HMB1_STRPU Homeobox protein HB1 OS=Strongylocentrotus purpuratus PE=2 SV=2
Length = 308
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 61/79 (77%), Gaps = 5/79 (6%)
Query: 258 YPWMK-SNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQL 316
YPWM S + G KR RQTY+RYQTLELEKEFH+N+YL+R+RRIE++H L L
Sbjct: 174 YPWMPVSGPNVGLEV----GRKRCRQTYTRYQTLELEKEFHFNRYLTRRRRIELSHLLGL 229
Query: 317 TERQIKIWFQNRRMKLKKE 335
TERQIKIWFQNRRMK KKE
Sbjct: 230 TERQIKIWFQNRRMKYKKE 248
>sp|P10629|HXC6_MOUSE Homeobox protein Hox-C6 OS=Mus musculus GN=Hoxc6 PE=2 SV=2
Length = 235
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 67/103 (65%), Gaps = 11/103 (10%)
Query: 243 VSSQQDHEGEDGAT----------LYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLEL 292
S QD E G T +YPWM+ S G +R RQ YSRYQTLEL
Sbjct: 98 TSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHS-GVGYGADRRRGRQIYSRYQTLEL 156
Query: 293 EKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
EKEFH+N+YL+R+RRIEIA+ L LTERQIKIWFQNRRMK KKE
Sbjct: 157 EKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 199
>sp|P09630|HXC6_HUMAN Homeobox protein Hox-C6 OS=Homo sapiens GN=HOXC6 PE=2 SV=3
Length = 235
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 67/103 (65%), Gaps = 11/103 (10%)
Query: 243 VSSQQDHEGEDGAT----------LYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLEL 292
S QD E G T +YPWM+ S G +R RQ YSRYQTLEL
Sbjct: 98 TSIAQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHS-GVGYGADRRRGRQIYSRYQTLEL 156
Query: 293 EKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
EKEFH+N+YL+R+RRIEIA+ L LTERQIKIWFQNRRMK KKE
Sbjct: 157 EKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKE 199
>sp|P09092|HXA6_MOUSE Homeobox protein Hox-A6 OS=Mus musculus GN=Hoxa6 PE=2 SV=2
Length = 232
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 73/102 (71%), Gaps = 5/102 (4%)
Query: 242 SVSSQQDHE-GED---GATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFH 297
SV + HE G D + +YPWM+ ++ G +R RQTY+RYQTLELEKEFH
Sbjct: 116 SVQGKALHEEGTDRKYTSPVYPWMQ-RMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFH 174
Query: 298 YNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEKIVM 339
+N+YL+R+RRIEIA+ L LTERQIKIWFQNRRMK KKE ++
Sbjct: 175 FNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLI 216
>sp|Q9PWD4|HXA7_MORSA Homeobox protein Hox-A7 OS=Morone saxatilis GN=hoxa7 PE=3 SV=1
Length = 225
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 62/79 (78%), Gaps = 9/79 (11%)
Query: 257 LYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQL 316
+YPWM+++ KR RQTYSRYQTLELEKEFH+N+YL+R+RRIEIAH L L
Sbjct: 115 MYPWMRASDPT---------RKRGRQTYSRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 165
Query: 317 TERQIKIWFQNRRMKLKKE 335
+ERQIKIWFQNRRMK KK+
Sbjct: 166 SERQIKIWFQNRRMKWKKD 184
>sp|P06798|HXA4_MOUSE Homeobox protein Hox-A4 OS=Mus musculus GN=Hoxa4 PE=2 SV=4
Length = 285
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 68/95 (71%), Gaps = 9/95 (9%)
Query: 247 QDHEGEDG--ATLYPWMK----SNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNK 300
Q G G +YPWMK S ++SY+ GG KRSR Y+R Q LELEKEFH+N+
Sbjct: 147 QGPAGPKGKEPVVYPWMKKIHVSAVNSSYN---GGEPKRSRTAYTRQQVLELEKEFHFNR 203
Query: 301 YLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
YL+R+RRIEIAH L L+ERQ+KIWFQNRRMK KK+
Sbjct: 204 YLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKD 238
>sp|Q9YGT4|HXB6B_DANRE Homeobox protein Hox-B6b OS=Danio rerio GN=hoxb6b PE=2 SV=2
Length = 224
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 63/81 (77%), Gaps = 6/81 (7%)
Query: 257 LYPWMKSNQDASYSCKT--GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHEL 314
+YPWM+ SC G +R RQTY+R+QTLELEKEFH+N+YL+R+RRIEI+H L
Sbjct: 129 VYPWMQRMN----SCNGMPGSTGRRGRQTYTRFQTLELEKEFHFNRYLTRRRRIEISHAL 184
Query: 315 QLTERQIKIWFQNRRMKLKKE 335
LTERQIKIWFQNRRMK KKE
Sbjct: 185 CLTERQIKIWFQNRRMKWKKE 205
>sp|P09632|HXB8_MOUSE Homeobox protein Hox-B8 OS=Mus musculus GN=Hoxb8 PE=2 SV=2
Length = 243
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 60/79 (75%), Gaps = 8/79 (10%)
Query: 257 LYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQL 316
L+PWM+ A G +R RQTYSRYQTLELEKEF +N YL+RKRRIE++H L L
Sbjct: 134 LFPWMRPQAAA--------GRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGL 185
Query: 317 TERQIKIWFQNRRMKLKKE 335
TERQ+KIWFQNRRMK KKE
Sbjct: 186 TERQVKIWFQNRRMKWKKE 204
>sp|A2D5Y4|HXA5_LEMCA Homeobox protein Hox-A5 OS=Lemur catta GN=HOXA5 PE=3 SV=1
Length = 270
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 234 SPDVQDSCSVSSQQDHEGEDGATLYPWMKSNQDASYSCKTGGGNKRSRQTYSRYQTLELE 293
+P + S S+ +YPWM+ S+ G KR+R Y+RYQTLELE
Sbjct: 153 APASSEQASAQSEPSPAPPAQPQIYPWMR-KLHISHDNIGGPEGKRARTAYTRYQTLELE 211
Query: 294 KEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
KEFH+N+YL+R+RRIEIAH L L+ERQIKIWFQNRRMK KK+
Sbjct: 212 KEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKD 253
>sp|Q9PWM5|HXC6B_DANRE Homeobox protein Hox-C6b OS=Danio rerio GN=hoxc6b PE=2 SV=1
Length = 227
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 74/115 (64%), Gaps = 17/115 (14%)
Query: 236 DVQDSC-------SVSSQQDHEGEDGAT--------LYPWMKSNQDASYSCKTGGGNKRS 280
DV SC S QD+ + G T +YPWM+ + S+ G +R
Sbjct: 81 DVLPSCRQGFGQTQGSLTQDYASDQGKTVEPKGVVQIYPWMQ--RMNSHRVGYGSDRRRG 138
Query: 281 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
RQ YSRYQTLELEKEFHYN+YL+R+RRIEIA+ L L+ERQIKIWFQNRRMK KKE
Sbjct: 139 RQIYSRYQTLELEKEFHYNRYLTRRRRIEIANTLCLSERQIKIWFQNRRMKWKKE 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,379,484
Number of Sequences: 539616
Number of extensions: 6780878
Number of successful extensions: 17253
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 14239
Number of HSP's gapped (non-prelim): 2533
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)