RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13591
(339 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 94.9 bits (236), Expect = 2e-25
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEK 336
+R+R ++++ Q LEKEF Y R +A ++ L E +I++WF NRR K ++E+
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 60
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 91.8 bits (228), Expect = 2e-24
Identities = 47/55 (85%), Positives = 52/55 (94%)
Query: 281 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
RQTY+RYQTLELEKEFH+N+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 91.4 bits (227), Expect = 3e-24
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 334
K + +S QT+ELEK+F KYLS R +A LQL+ERQ+K WFQNRR K ++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 90.4 bits (224), Expect = 2e-23
Identities = 43/86 (50%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 255 ATLYPWMK----SNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEI 310
A + WMK + A S G R ++ Q ELEKEFH+NKYLSR RR+EI
Sbjct: 1 ARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEI 60
Query: 311 AHELQLTERQIKIWFQNRRMKLKKEK 336
A L+L E Q+KIWFQNRRMK KK +
Sbjct: 61 AATLELNETQVKIWFQNRRMKQKKRE 86
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 89.9 bits (223), Expect = 2e-23
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 266 DASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWF 325
+ + + ++ R Y+++QTLELEKEF +N YL+R RR E+A L LTERQ+KIWF
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 61
Query: 326 QNRRMKLKKEK 336
QNRRMK+KK
Sbjct: 62 QNRRMKMKKIN 72
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 87.2 bits (216), Expect = 1e-22
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 334
++ R YS+ Q ELE+E+ NK++++ +R +I+ L+ERQI IWFQNRR+K KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 86.8 bits (215), Expect = 2e-22
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEKI 337
R R + Q L + N + ++ L+ R I++WFQN+R K KK I
Sbjct: 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63
Query: 338 VM 339
+M
Sbjct: 64 MM 65
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 83.4 bits (206), Expect = 3e-21
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 279 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMK 331
R R +S Q L++EF+ N+YL+ +RR +++ EL L E QIKIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 81.5 bits (201), Expect = 2e-20
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEK 336
+RSR T+S Q ELE+ F +Y R E+A LTE +I++WFQNRR +L+K+
Sbjct: 3 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 61
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 80.7 bits (199), Expect = 3e-20
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 279 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEK 336
+ R T S LE+ F + S + + +A EL L + +++WF NRR + K+ K
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 80.3 bits (198), Expect = 4e-20
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 279 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 335
R R ++R Q LEKEF+ Y+SR RR E+A +L L E IK+WFQNRRMK K++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 80.0 bits (197), Expect = 6e-20
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 334
++ R ++ Q L LE++F +YLS R E + L LTE Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 80.5 bits (198), Expect = 7e-20
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 279 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIA---------------HELQLTERQIKI 323
SR T+ + +E F+ N+Y +R EIA ++T ++
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 324 WFQNRRMKLKKEK 336
WF NRR ++K+
Sbjct: 62 WFANRRKEIKRRA 74
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 80.0 bits (197), Expect = 7e-20
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEK 336
++ R +S+ Q ELE+ F KYLS R +A + LT Q+KIWFQN R K+K++
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 79.6 bits (196), Expect = 8e-20
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEK 336
+R R ++ Q +LE F N+Y R EIA LTE ++++WF+NRR K +K +
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 77.5 bits (191), Expect = 6e-19
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 277 NKRSRQTYSRYQTLELEKEF---HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 333
K R ++ T + + Y + + +IA + LT Q+ WF N R ++
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61
Query: 334 K 334
+
Sbjct: 62 Q 62
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 76.9 bits (189), Expect = 9e-19
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEK 336
+R+R T++ Q ELE+ F +YL+ R +++ +L L Q+KIWF+NRR + K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 60
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 75.7 bits (186), Expect = 2e-18
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 281 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRR 329
R ++ Q L F NK S++ +I I+ +L L + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 76.2 bits (187), Expect = 2e-18
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 278 KRSRQTYSRYQTLELEKEFHY-NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEK 336
T + Q LE F+ NK+ IA E LTE Q + WF+ R + ++ +
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 73.6 bits (181), Expect = 1e-17
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 288 QTLELEKEF-HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 334
LEK F K+ KR ++ +L R I+ WF+ RR + K
Sbjct: 4 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 74.3 bits (182), Expect = 1e-17
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEK 336
++ R +++ QT ELE+ F +YLS R +A ++LT Q+KIWFQN R K K+ +
Sbjct: 10 RKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 73.9 bits (181), Expect = 1e-17
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 334
KR R + LE F S ++ IA++L L + +++WF NRR K K+
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 73.0 bits (179), Expect = 2e-17
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 281 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 333
+ + S LE+ F + L+ K + E+A + +T Q+++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 72.8 bits (178), Expect = 4e-17
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 274 GGGNKRSRQTYSRYQTLELEKEFH-YNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKL 332
G RSR S L+ H Y ++ ++ +L L + I +FQN+R +
Sbjct: 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63
Query: 333 KKE 335
K
Sbjct: 64 KHS 66
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 72.1 bits (177), Expect = 5e-17
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNK---YLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 334
+ R +++ LE F N YL K + L+ QIK W NRR K K
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 70.2 bits (172), Expect = 2e-16
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 279 RSRQTYSRYQTLELEKEF-HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 333
+ LEK F KY KR ++ +L + R+I+ WF++RR + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 69.2 bits (169), Expect = 8e-16
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 278 KRSRQTYSRYQTLELEK---EFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 334
+R R+ +++ T L + N Y S + + E+A + +T Q+ WF N+R++ KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 335 E 335
Sbjct: 62 N 62
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 66.5 bits (162), Expect = 5e-15
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 281 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 334
R + + LEK F N+ + + IA +L + + I++WF NRR K K+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 65.1 bits (158), Expect = 3e-14
Identities = 10/59 (16%), Positives = 25/59 (42%)
Query: 278 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEK 336
+ + + Q L+ F + L+ + + + +LT R+I WF ++ ++
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 63
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 63.5 bits (154), Expect = 9e-14
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 263 SNQDASYSCKTGGGNKRSRQTYSRYQTLELEKEFH----YNKYLSRKRRIEIAHELQLTE 318
S S +GG KR R ++ Q ++ + + E +
Sbjct: 3 SGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRR 62
Query: 319 RQIKIWFQNRRMKLKKE 335
+ +KIW N +
Sbjct: 63 QVLKIWMHNNKNSGPSS 79
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 62.1 bits (150), Expect = 3e-13
Identities = 13/63 (20%), Positives = 27/63 (42%)
Query: 275 GGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 334
G + S + ++ Q L+ F ++ R+ ++ L +I WF + R LK
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
Query: 335 EKI 337
++
Sbjct: 61 GQL 63
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 60.2 bits (145), Expect = 2e-12
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 21/77 (27%)
Query: 281 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHEL---------------------QLTER 319
R + L + + K S++ R + E +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 320 QIKIWFQNRRMKLKKEK 336
++ WF NRR +
Sbjct: 61 RVYNWFANRRKEEAFRH 77
>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal
domain {Human (Homo sapiens), HLA-DQ group [TaxId:
9606]}
Length = 97
Score = 27.3 bits (60), Expect = 0.93
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 20/101 (19%)
Query: 237 VQDSCSVSSQQDHEGEDGATL-------YP------WMKSNQDASYSCKTGGGNKRSRQT 283
V+ + ++S + L YP W +++Q+ + + + T
Sbjct: 1 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 60
Query: 284 YSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIW 324
+ LE+ + + Y + H L W
Sbjct: 61 FQILVMLEMTPQ-RGDVY-----TCHVEHP-SLQSPITVEW 94
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 26.6 bits (57), Expect = 5.4
Identities = 15/198 (7%), Positives = 41/198 (20%), Gaps = 5/198 (2%)
Query: 11 NQMNHNVMQSFNNWYQNQTFHPNQYYEAYNNNGPTKPEPNPCQYENRDARYFDKDAKYFD 70
NH + + + + DA+ + KY +
Sbjct: 79 VHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAE 138
Query: 71 KDAKYFDKDPAKYY-----DNFLDHNTINYNHMNAFNQFHMKSNPNHTDYLRTNSDKETL 125
+ A+ ++ K Y + + + L
Sbjct: 139 EIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGL 198
Query: 126 NATNFMKPSFDKDAKYFDKDPAKYYDNFLNHNAMNYNQMNAFNQFHMKLNPNHTDYLRTN 185
+ + + + + L++ ++ +++
Sbjct: 199 SLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGK 258
Query: 186 SDKETLNATNFVPKDEAI 203
E V E I
Sbjct: 259 ITGEVAQIIRKVGTREGI 276
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.395
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,317,473
Number of extensions: 64020
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 51
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.4 bits)