Query psy13592
Match_columns 321
No_of_seqs 273 out of 1750
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 23:07:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r5y_A Homeotic protein sex co 99.8 2.3E-21 8E-26 152.2 7.9 84 187-270 4-87 (88)
2 2dms_A Homeobox protein OTX2; 99.8 2.1E-19 7.2E-24 138.5 8.8 69 208-276 4-72 (80)
3 2dmq_A LIM/homeobox protein LH 99.8 2.7E-19 9.2E-24 137.7 9.0 70 208-277 4-73 (80)
4 1b72_A Protein (homeobox prote 99.8 1.2E-19 4.1E-24 145.0 7.2 85 188-272 7-95 (97)
5 2da3_A Alpha-fetoprotein enhan 99.8 1.7E-19 6E-24 138.6 7.8 65 208-272 14-78 (80)
6 2dmt_A Homeobox protein BARH-l 99.8 2.2E-19 7.5E-24 138.5 8.3 64 208-271 14-77 (80)
7 1b8i_A Ultrabithorax, protein 99.8 1.1E-19 3.9E-24 140.6 6.5 75 189-270 5-79 (81)
8 2cra_A Homeobox protein HOX-B1 99.8 1.7E-19 6E-24 135.6 6.9 64 208-271 4-67 (70)
9 2dmu_A Homeobox protein goosec 99.8 2.8E-19 9.4E-24 134.4 7.7 65 208-272 4-68 (70)
10 1nk2_P Homeobox protein VND; h 99.8 3.6E-19 1.2E-23 136.4 8.4 68 208-275 6-73 (77)
11 2cue_A Paired box protein PAX6 99.8 1.8E-19 6.2E-24 139.0 6.2 67 208-274 4-70 (80)
12 2kt0_A Nanog, homeobox protein 99.8 4.2E-19 1.4E-23 137.9 8.3 64 208-271 19-82 (84)
13 2da2_A Alpha-fetoprotein enhan 99.8 3E-19 1E-23 134.2 7.2 65 208-272 4-68 (70)
14 3a01_A Homeodomain-containing 99.8 5.1E-19 1.8E-23 140.5 8.6 73 207-279 13-85 (93)
15 2h1k_A IPF-1, pancreatic and d 99.8 2.7E-19 9.1E-24 132.0 6.4 61 210-270 2-62 (63)
16 2da1_A Alpha-fetoprotein enhan 99.8 2.6E-19 8.9E-24 134.5 6.5 65 208-272 4-68 (70)
17 2vi6_A Homeobox protein nanog; 99.8 1.9E-19 6.4E-24 132.3 5.5 60 210-269 2-61 (62)
18 2djn_A Homeobox protein DLX-5; 99.8 3.1E-19 1.1E-23 134.2 6.5 64 208-271 4-67 (70)
19 2e1o_A Homeobox protein PRH; D 99.8 5.9E-19 2E-23 132.7 8.0 65 208-272 4-68 (70)
20 1ahd_P Antennapedia protein mu 99.8 4.8E-19 1.6E-23 132.7 6.6 64 211-274 2-65 (68)
21 2da4_A Hypothetical protein DK 99.8 6.7E-19 2.3E-23 135.7 7.5 63 208-270 5-71 (80)
22 1puf_A HOX-1.7, homeobox prote 99.8 8.6E-19 2.9E-23 134.3 7.8 65 208-272 10-74 (77)
23 2m0c_A Homeobox protein arista 99.8 9.3E-19 3.2E-23 132.8 7.8 67 208-274 6-72 (75)
24 2hdd_A Protein (engrailed home 99.8 4.7E-19 1.6E-23 129.7 5.9 59 211-269 3-61 (61)
25 1wh5_A ZF-HD homeobox family p 99.8 6.3E-19 2.2E-23 136.4 6.8 60 209-268 15-78 (80)
26 1zq3_P PRD-4, homeotic bicoid 99.8 1E-18 3.4E-23 130.8 7.3 64 211-274 2-65 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.8 1.2E-18 4E-23 130.5 7.5 64 211-274 2-65 (68)
28 2l7z_A Homeobox protein HOX-A1 99.8 1.3E-18 4.4E-23 132.1 7.8 64 209-272 5-68 (73)
29 1ig7_A Homeotic protein MSX-1; 99.8 1E-18 3.5E-23 126.5 6.7 57 212-268 1-57 (58)
30 1yz8_P Pituitary homeobox 2; D 99.8 4.7E-19 1.6E-23 132.5 4.9 63 210-272 2-64 (68)
31 1bw5_A ISL-1HD, insulin gene e 99.8 7.2E-19 2.5E-23 130.7 5.7 62 210-271 2-63 (66)
32 1wh7_A ZF-HD homeobox family p 99.8 7E-19 2.4E-23 136.2 5.8 60 208-268 14-78 (80)
33 1fjl_A Paired protein; DNA-bin 99.8 1.1E-18 3.8E-23 134.8 6.9 64 208-271 15-78 (81)
34 1jgg_A Segmentation protein EV 99.7 1.5E-18 5E-23 126.7 6.3 58 212-269 2-59 (60)
35 2ecc_A Homeobox and leucine zi 99.7 3.5E-18 1.2E-22 131.0 8.3 63 213-275 5-67 (76)
36 2hi3_A Homeodomain-only protei 99.7 3.3E-18 1.1E-22 129.7 7.8 62 212-273 3-65 (73)
37 2dn0_A Zinc fingers and homeob 99.7 2.4E-18 8.3E-23 131.4 6.8 63 211-273 8-70 (76)
38 1uhs_A HOP, homeodomain only p 99.7 4E-18 1.4E-22 128.8 7.6 62 212-273 2-64 (72)
39 2k40_A Homeobox expressed in E 99.7 2.8E-18 9.4E-23 127.9 6.5 61 212-272 2-62 (67)
40 3a02_A Homeobox protein arista 99.7 1.9E-18 6.4E-23 126.1 5.4 58 214-271 2-59 (60)
41 2da5_A Zinc fingers and homeob 99.7 4.6E-18 1.6E-22 129.7 7.8 61 213-273 9-69 (75)
42 2ly9_A Zinc fingers and homeob 99.7 4.5E-18 1.6E-22 129.0 7.2 65 210-274 5-69 (74)
43 3rkq_A Homeobox protein NKX-2. 99.7 4E-18 1.4E-22 122.9 6.3 57 211-267 2-58 (58)
44 2ecb_A Zinc fingers and homeob 99.7 1.1E-17 3.8E-22 132.0 9.2 59 217-275 17-75 (89)
45 3a03_A T-cell leukemia homeobo 99.7 4E-18 1.4E-22 122.8 5.9 54 216-269 2-55 (56)
46 3nar_A ZHX1, zinc fingers and 99.7 3.9E-18 1.3E-22 136.0 6.0 64 208-271 22-85 (96)
47 2cuf_A FLJ21616 protein; homeo 99.7 9E-18 3.1E-22 133.6 8.0 66 208-273 4-84 (95)
48 1akh_A Protein (mating-type pr 99.7 3.9E-18 1.3E-22 124.6 5.2 59 209-267 3-61 (61)
49 1x2n_A Homeobox protein pknox1 99.7 1.6E-17 5.6E-22 125.7 7.8 65 208-272 4-71 (73)
50 2cqx_A LAG1 longevity assuranc 99.7 1.3E-17 4.4E-22 126.5 5.4 59 212-270 9-68 (72)
51 1puf_B PRE-B-cell leukemia tra 99.7 2.7E-17 9.4E-22 124.4 6.9 62 212-273 2-66 (73)
52 2dmn_A Homeobox protein TGIF2L 99.7 6.8E-17 2.3E-21 125.6 8.8 68 208-275 4-74 (83)
53 2dmp_A Zinc fingers and homeob 99.7 7.9E-17 2.7E-21 126.9 9.2 60 216-275 18-77 (89)
54 1b72_B Protein (PBX1); homeodo 99.7 1.2E-17 4E-22 130.5 4.4 62 212-273 2-66 (87)
55 1du6_A PBX1, homeobox protein 99.7 1.7E-17 5.8E-22 122.4 4.7 58 211-268 3-63 (64)
56 2l9r_A Homeobox protein NKX-3. 99.7 2.5E-17 8.5E-22 124.1 5.5 59 216-274 9-67 (69)
57 1k61_A Mating-type protein alp 99.7 5.7E-17 2E-21 118.1 6.0 56 214-269 1-59 (60)
58 2xsd_C POU domain, class 3, tr 99.7 3.3E-17 1.1E-21 142.9 5.3 65 208-272 96-160 (164)
59 1wi3_A DNA-binding protein SAT 99.7 8.3E-17 2.8E-21 120.1 6.7 60 208-267 4-64 (71)
60 2da6_A Hepatocyte nuclear fact 99.7 8.6E-17 2.9E-21 129.7 7.2 65 208-272 3-88 (102)
61 1e3o_C Octamer-binding transcr 99.7 4.8E-17 1.7E-21 141.1 5.7 61 209-269 99-159 (160)
62 1au7_A Protein PIT-1, GHF-1; c 99.7 5.5E-17 1.9E-21 138.8 5.7 61 209-269 85-145 (146)
63 3nau_A Zinc fingers and homeob 99.7 1E-16 3.5E-21 119.3 6.0 52 219-270 12-63 (66)
64 1lfb_A Liver transcription fac 99.7 5.8E-17 2E-21 130.3 4.7 65 207-271 5-90 (99)
65 1mnm_C Protein (MAT alpha-2 tr 99.6 1.5E-16 5.2E-21 124.4 6.4 59 210-268 26-87 (87)
66 1le8_B Mating-type protein alp 99.6 1E-16 3.5E-21 124.5 5.0 60 212-271 3-65 (83)
67 3d1n_I POU domain, class 6, tr 99.6 1.9E-16 6.5E-21 135.9 7.0 61 208-268 90-150 (151)
68 1x2m_A LAG1 longevity assuranc 99.6 1E-16 3.5E-21 119.0 4.2 51 220-270 9-60 (64)
69 2e19_A Transcription factor 8; 99.6 2.3E-16 7.8E-21 117.0 5.6 53 216-268 8-60 (64)
70 3l1p_A POU domain, class 5, tr 99.6 3.7E-16 1.3E-20 134.8 6.0 61 209-269 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.6 7.9E-16 2.7E-20 133.6 5.1 64 208-271 94-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.5 7.7E-15 2.6E-19 109.6 5.3 58 216-273 3-63 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 2.5E-14 8.4E-19 127.8 3.0 61 208-268 112-193 (194)
74 2da7_A Zinc finger homeobox pr 99.4 4.4E-13 1.5E-17 100.6 5.4 48 220-267 14-61 (71)
75 2h8r_A Hepatocyte nuclear fact 99.3 7.2E-13 2.5E-17 120.1 5.1 60 207-266 138-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.3 2.2E-12 7.5E-17 101.5 6.9 58 216-273 10-70 (89)
77 1mh3_A Maltose binding-A1 home 99.3 1.7E-12 5.9E-17 124.9 4.0 56 212-267 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.6 3.3E-09 1.1E-13 70.1 0.0 23 253-275 1-23 (37)
79 2ys9_A Homeobox and leucine zi 92.8 0.09 3.1E-06 39.0 3.6 39 222-260 17-55 (70)
80 2glo_A Brinker CG9653-PA; prot 68.9 5.3 0.00018 27.4 3.8 45 215-260 3-47 (59)
81 2elh_A CG11849-PA, LD40883P; s 66.6 9.6 0.00033 28.2 5.2 45 212-261 17-61 (87)
82 3hug_A RNA polymerase sigma fa 63.9 6.3 0.00021 29.4 3.7 49 218-271 38-86 (92)
83 1hlv_A CENP-B, major centromer 60.8 14 0.00047 29.0 5.4 49 214-265 4-52 (131)
84 1jko_C HIN recombinase, DNA-in 57.2 4.6 0.00016 25.9 1.6 40 218-262 6-45 (52)
85 2rgt_A Fusion of LIM/homeobox 56.8 0.45 1.5E-05 40.2 -4.5 30 209-238 134-163 (169)
86 1tc3_C Protein (TC3 transposas 55.8 15 0.00053 22.7 4.1 39 217-260 5-43 (51)
87 2o8x_A Probable RNA polymerase 55.6 10 0.00035 26.1 3.4 48 217-269 15-62 (70)
88 3c57_A Two component transcrip 54.2 14 0.00049 27.7 4.2 47 216-268 26-72 (95)
89 1p4w_A RCSB; solution structur 52.5 24 0.00082 27.0 5.3 47 215-267 32-78 (99)
90 1je8_A Nitrate/nitrite respons 44.9 27 0.00092 25.4 4.4 48 215-268 19-66 (82)
91 1fse_A GERE; helix-turn-helix 44.2 24 0.00084 24.3 3.9 48 215-268 9-56 (74)
92 3mzy_A RNA polymerase sigma-H 44.0 22 0.00074 28.0 4.0 49 217-271 109-157 (164)
93 2p7v_B Sigma-70, RNA polymeras 43.8 24 0.00082 24.4 3.8 51 217-268 5-55 (68)
94 1x3u_A Transcriptional regulat 42.3 21 0.00072 25.1 3.3 46 217-268 16-61 (79)
95 1ku3_A Sigma factor SIGA; heli 40.7 34 0.0012 24.0 4.2 50 217-267 10-59 (73)
96 1s7o_A Hypothetical UPF0122 pr 40.4 34 0.0012 26.8 4.6 49 217-270 22-70 (113)
97 2lv7_A Calcium-binding protein 39.7 57 0.002 24.4 5.7 47 214-260 26-79 (100)
98 2jn6_A Protein CGL2762, transp 38.5 44 0.0015 24.7 4.8 43 215-260 3-45 (97)
99 1tty_A Sigma-A, RNA polymerase 37.9 34 0.0012 25.0 4.0 51 217-268 18-68 (87)
100 1xsv_A Hypothetical UPF0122 pr 35.8 34 0.0012 26.6 3.9 48 218-270 26-73 (113)
101 2rnj_A Response regulator prot 35.0 27 0.00091 25.7 3.0 47 216-268 28-74 (91)
102 1rp3_A RNA polymerase sigma fa 34.5 31 0.001 29.1 3.7 47 218-269 188-234 (239)
103 2hxi_A Putative transcriptiona 33.4 23 0.00077 30.8 2.7 50 214-264 25-75 (241)
104 1or7_A Sigma-24, RNA polymeras 33.1 39 0.0013 27.6 4.0 48 218-270 141-188 (194)
105 2jpc_A SSRB; DNA binding prote 32.9 29 0.00099 23.1 2.6 28 241-268 16-43 (61)
106 2pmy_A RAS and EF-hand domain- 31.8 48 0.0016 23.8 3.9 46 215-260 18-68 (91)
107 2lfw_A PHYR sigma-like domain; 30.0 39 0.0013 27.2 3.4 48 217-269 93-140 (157)
108 1fi6_A EH domain protein REPS1 29.9 64 0.0022 23.4 4.4 44 217-260 2-50 (92)
109 2rn7_A IS629 ORFA; helix, all 27.9 84 0.0029 23.5 4.8 46 216-261 5-53 (108)
110 3ulq_B Transcriptional regulat 27.5 84 0.0029 23.3 4.7 47 214-266 26-72 (90)
111 2q0o_A Probable transcriptiona 25.5 67 0.0023 27.6 4.4 47 215-267 173-219 (236)
112 1c07_A Protein (epidermal grow 25.1 71 0.0024 23.4 3.8 43 218-260 4-51 (95)
113 2q24_A Putative TETR family tr 24.3 34 0.0012 27.6 2.0 40 222-263 20-59 (194)
114 2x48_A CAG38821; archeal virus 24.3 58 0.002 21.2 2.9 36 220-260 18-53 (55)
115 1iuf_A Centromere ABP1 protein 23.4 1.1E+02 0.0038 24.5 5.1 51 212-262 6-60 (144)
116 3bd1_A CRO protein; transcript 22.6 36 0.0012 24.0 1.6 24 240-263 13-36 (79)
117 2cq7_A Cysteine-rich secretory 22.4 25 0.00087 24.0 0.7 9 49-57 6-14 (49)
118 2xi8_A Putative transcription 22.2 31 0.0011 22.8 1.2 23 241-263 17-39 (66)
119 3clo_A Transcriptional regulat 22.1 81 0.0028 27.6 4.3 47 216-268 196-242 (258)
120 1iq3_A Ralbp1-interacting prot 21.5 65 0.0022 24.6 3.1 46 215-260 13-63 (110)
121 2r1j_L Repressor protein C2; p 21.5 33 0.0011 22.8 1.2 23 241-263 21-43 (68)
122 1l3l_A Transcriptional activat 21.2 1.1E+02 0.0038 26.2 4.9 47 215-267 171-217 (234)
123 1k78_A Paired box protein PAX5 20.3 1.3E+02 0.0046 23.5 4.9 41 216-261 31-71 (149)
No 1
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.84 E-value=2.3e-21 Score=152.22 Aligned_cols=84 Identities=64% Similarity=1.082 Sum_probs=65.2
Q ss_pred CCCCcCccccCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHh
Q psy13592 187 DGATLYPWMKSNHDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKL 266 (321)
Q Consensus 187 dg~~~~Pwm~~s~~~s~s~~~~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~ 266 (321)
.....+|||...+.+.......++.+|.|+.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+
T Consensus 4 ~p~~~~pwm~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~ 83 (88)
T 2r5y_A 4 NPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKW 83 (88)
T ss_dssp CCSSCCGGGSCC---------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhccCCCCCCCCCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHh
Confidence 35678999998776555555566788999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q psy13592 267 KKEV 270 (321)
Q Consensus 267 Kr~~ 270 (321)
||..
T Consensus 84 kk~~ 87 (88)
T 2r5y_A 84 KKEH 87 (88)
T ss_dssp HTTC
T ss_pred Hhhc
Confidence 9865
No 2
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=2.1e-19 Score=138.53 Aligned_cols=69 Identities=30% Similarity=0.520 Sum_probs=63.0
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccCCC
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPNIS 276 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~~~ 276 (321)
+.+.+|.|+.|+..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+........
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~ 72 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNG 72 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCCC
Confidence 356788999999999999999999999999999999999999999999999999999999977654433
No 3
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=137.75 Aligned_cols=70 Identities=29% Similarity=0.508 Sum_probs=63.7
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccCCCC
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPNISS 277 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~~~~ 277 (321)
+.+.+|.|+.||.+|+.+||..|..++||+..++++||.+|+|++.+|+|||||||+|+||+........
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~~~ 73 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGG 73 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHhcCC
Confidence 3457889999999999999999999999999999999999999999999999999999999876655443
No 4
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.2e-19 Score=144.99 Aligned_cols=85 Identities=49% Similarity=0.745 Sum_probs=64.2
Q ss_pred CCCcCccccCCCCCC----CCCCCCCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHH
Q psy13592 188 GATLYPWMKSNHDAS----YSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRR 263 (321)
Q Consensus 188 g~~~~Pwm~~s~~~s----~s~~~~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRR 263 (321)
....++||+..+... .+....++.++.|+.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||
T Consensus 7 ~~~~~~W~~~~r~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR 86 (97)
T 1b72_A 7 TARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRR 86 (97)
T ss_dssp -CCCCGGGGC--------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCCCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHh
Confidence 456788998655422 1223345678899999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhcc
Q psy13592 264 MKLKKEVLR 272 (321)
Q Consensus 264 aK~Kr~~~~ 272 (321)
+|+|+..+.
T Consensus 87 ~k~kk~~~~ 95 (97)
T 1b72_A 87 MKQKKRERE 95 (97)
T ss_dssp HHHHHHHTC
T ss_pred HHHhHHhcc
Confidence 999997654
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=138.60 Aligned_cols=65 Identities=31% Similarity=0.398 Sum_probs=60.7
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
..+.+|.|+.||.+|+.+||..|..++||+..++++||.+|+|++.+|+|||||||+|+||....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 45678899999999999999999999999999999999999999999999999999999996643
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=138.52 Aligned_cols=64 Identities=44% Similarity=0.694 Sum_probs=60.2
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
..+.+|.|+.||..|+.+||..|..++||+..++++||..|+|++++|+|||||||+|+||...
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 3467888999999999999999999999999999999999999999999999999999999654
No 7
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.79 E-value=1.1e-19 Score=140.63 Aligned_cols=75 Identities=73% Similarity=1.174 Sum_probs=58.9
Q ss_pred CCcCccccCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 189 ATLYPWMKSNHDASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 189 ~~~~Pwm~~s~~~s~s~~~~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
...+|||.... ..++.+|.|+.||..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||
T Consensus 5 ~~~~p~~~~~~-------~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 77 (81)
T 1b8i_A 5 HTFYPWMAIAG-------TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKK 77 (81)
T ss_dssp --CCTTCC------------------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccccCC-------CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhh
Confidence 34577775321 23457888999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q psy13592 269 EV 270 (321)
Q Consensus 269 ~~ 270 (321)
..
T Consensus 78 ~~ 79 (81)
T 1b8i_A 78 EI 79 (81)
T ss_dssp TC
T ss_pred hc
Confidence 64
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.7e-19 Score=135.62 Aligned_cols=64 Identities=44% Similarity=0.716 Sum_probs=60.0
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
+++.+|.|+.||..|+.+||..|..++||+..++++||..++|++.+|+|||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 3467888999999999999999999999999999999999999999999999999999998654
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=134.43 Aligned_cols=65 Identities=29% Similarity=0.548 Sum_probs=60.5
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
+++.+|.|+.||..|+.+||..|..++||+..++++||.+|+|++.+|++||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 34578889999999999999999999999999999999999999999999999999999996543
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=3.6e-19 Score=136.36 Aligned_cols=68 Identities=35% Similarity=0.579 Sum_probs=62.7
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccCC
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPNI 275 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~~ 275 (321)
..+.+|.|+.||..|+.+||..|..++||+..++++||..|||++++|+|||||||+|+|+.......
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~ 73 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY 73 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccC
Confidence 44677889999999999999999999999999999999999999999999999999999997765544
No 11
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.8e-19 Score=139.02 Aligned_cols=67 Identities=34% Similarity=0.588 Sum_probs=62.2
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccC
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPN 274 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~ 274 (321)
+.+.+|.|+.|+..|+.+||..|..++||+..++++||..|+|++.+|+|||||||+|+|+..+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 3467889999999999999999999999999999999999999999999999999999999876544
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=137.91 Aligned_cols=64 Identities=34% Similarity=0.509 Sum_probs=60.4
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
..+.+|.|+.|+..|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||.++
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999999999999999999999999654
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=134.17 Aligned_cols=65 Identities=31% Similarity=0.483 Sum_probs=60.6
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
.++.+|.|+.||..|+.+||..|..++||+..++++||..|||++.+|++||||||+|+||....
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 44678899999999999999999999999999999999999999999999999999999986543
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=5.1e-19 Score=140.47 Aligned_cols=73 Identities=37% Similarity=0.636 Sum_probs=62.9
Q ss_pred CCCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccCCCCcc
Q psy13592 207 TGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPNISSTT 279 (321)
Q Consensus 207 ~~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~~~~~~ 279 (321)
...+.+|.||.||..|+.+||..|..++||+..+|++||..+||++.+|+|||||||+|+|+...........
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~ 85 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQ 85 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999987766555444
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=2.7e-19 Score=131.95 Aligned_cols=61 Identities=69% Similarity=1.034 Sum_probs=56.4
Q ss_pred CCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhh
Q psy13592 210 GNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEV 270 (321)
Q Consensus 210 k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~ 270 (321)
+.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999864
No 16
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-19 Score=134.47 Aligned_cols=65 Identities=28% Similarity=0.362 Sum_probs=60.7
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
+.+.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 34678899999999999999999999999999999999999999999999999999999997653
No 17
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=1.9e-19 Score=132.27 Aligned_cols=60 Identities=37% Similarity=0.588 Sum_probs=53.2
Q ss_pred CCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 210 GNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 210 k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
+.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999985
No 18
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=134.25 Aligned_cols=64 Identities=41% Similarity=0.714 Sum_probs=60.1
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
+++.+|.|+.||..|+.+||..|..++||+..++++||..++|++.+|++||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 4467889999999999999999999999999999999999999999999999999999998654
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=5.9e-19 Score=132.70 Aligned_cols=65 Identities=46% Similarity=0.694 Sum_probs=60.3
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
+.+.++.|+.||..|+.+||..|..++||+..++++||..++|++.+|++||||||+|+|+....
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 34567889999999999999999999999999999999999999999999999999999997653
No 20
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.76 E-value=4.8e-19 Score=132.66 Aligned_cols=64 Identities=77% Similarity=1.167 Sum_probs=60.0
Q ss_pred CCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccC
Q psy13592 211 NKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPN 274 (321)
Q Consensus 211 ~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~ 274 (321)
++|.|+.||..|+.+||..|..++||+..++++||..+||++++|+|||||||+|+|+..+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 65 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKG 65 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccC
Confidence 4688999999999999999999999999999999999999999999999999999999775543
No 21
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.7e-19 Score=135.71 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=59.4
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhc----ccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhh
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYN----KYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEV 270 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~----~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~ 270 (321)
..+.+|.||.||.+|+.+||..|+.+ +||+..++++||.++||++.+|+|||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 45678899999999999999999999 9999999999999999999999999999999999853
No 22
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.76 E-value=8.6e-19 Score=134.26 Aligned_cols=65 Identities=57% Similarity=0.876 Sum_probs=60.9
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
.++.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 34577899999999999999999999999999999999999999999999999999999997754
No 23
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=9.3e-19 Score=132.81 Aligned_cols=67 Identities=37% Similarity=0.587 Sum_probs=61.9
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccC
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPN 274 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~ 274 (321)
.++.+|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+||.++...
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q 72 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQ 72 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence 4567888999999999999999999999999999999999999999999999999999999766543
No 24
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=4.7e-19 Score=129.72 Aligned_cols=59 Identities=47% Similarity=0.825 Sum_probs=53.8
Q ss_pred CCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 211 NKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 211 ~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 57889999999999999999999999999999999999999999999999999999973
No 25
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=6.3e-19 Score=136.39 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=57.5
Q ss_pred CCCCCCCcccChHHHHHHHHHhhh----cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 209 GGNKRSRQTYSRYQTLELEKEFHY----NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 209 ~k~rR~RT~fT~~Ql~~LEk~F~~----~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
.+.||.||.||.+|+.+||..|+. ++||+..+|++||..|+|++++|+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 467889999999999999999999 999999999999999999999999999999999986
No 26
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=1e-18 Score=130.81 Aligned_cols=64 Identities=34% Similarity=0.594 Sum_probs=60.0
Q ss_pred CCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccC
Q psy13592 211 NKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPN 274 (321)
Q Consensus 211 ~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~ 274 (321)
.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|+|||||||+|+|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 5788999999999999999999999999999999999999999999999999999999776543
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=1.2e-18 Score=130.46 Aligned_cols=64 Identities=39% Similarity=0.653 Sum_probs=59.9
Q ss_pred CCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccC
Q psy13592 211 NKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPN 274 (321)
Q Consensus 211 ~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~ 274 (321)
.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 65 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKA 65 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHhh
Confidence 5688999999999999999999999999999999999999999999999999999999766543
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.76 E-value=1.3e-18 Score=132.06 Aligned_cols=64 Identities=39% Similarity=0.692 Sum_probs=59.8
Q ss_pred CCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 209 GGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 209 ~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
.+.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 4568889999999999999999999999999999999999999999999999999999996543
No 29
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1e-18 Score=126.49 Aligned_cols=57 Identities=46% Similarity=0.775 Sum_probs=55.4
Q ss_pred CCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999997
No 30
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.75 E-value=4.7e-19 Score=132.53 Aligned_cols=63 Identities=35% Similarity=0.554 Sum_probs=59.9
Q ss_pred CCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 210 GNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 210 k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
+.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 568899999999999999999999999999999999999999999999999999999997654
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=7.2e-19 Score=130.69 Aligned_cols=62 Identities=26% Similarity=0.356 Sum_probs=58.8
Q ss_pred CCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 210 GNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 210 k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
+.+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 46789999999999999999999999999999999999999999999999999999998654
No 32
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=7e-19 Score=136.22 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=56.8
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhh-----cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHY-----NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~-----~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
..+.||.||.||.+|+.+|| .|.. ++||+..+|++||.+|+|++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34678899999999999999 8999 999999999999999999999999999999999986
No 33
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=1.1e-18 Score=134.78 Aligned_cols=64 Identities=41% Similarity=0.616 Sum_probs=59.4
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
.++.+|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||+..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999999754
No 34
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=1.5e-18 Score=126.66 Aligned_cols=58 Identities=52% Similarity=0.805 Sum_probs=55.6
Q ss_pred CCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 35
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=3.5e-18 Score=130.99 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=57.3
Q ss_pred CCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccCC
Q psy13592 213 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPNI 275 (321)
Q Consensus 213 R~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~~ 275 (321)
..|+.||.+|+.+||+.|..++||+..+|++||..+||+++||+|||||||+|+|+.+...-.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w~~ 67 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFR 67 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSSTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHHHH
Confidence 446679999999999999999999999999999999999999999999999999997655433
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=3.3e-18 Score=129.67 Aligned_cols=62 Identities=27% Similarity=0.274 Sum_probs=58.0
Q ss_pred CCCCcccChHHHHHHHHHhhh-cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhccc
Q psy13592 212 KRSRQTYSRYQTLELEKEFHY-NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRP 273 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F~~-~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~ 273 (321)
++.|+.||..|+.+||..|.. ++||+..++++||..+||++++|++||||||+|+||.....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCC
Confidence 567899999999999999995 99999999999999999999999999999999999977543
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=131.41 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=58.2
Q ss_pred CCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhccc
Q psy13592 211 NKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRP 273 (321)
Q Consensus 211 ~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~ 273 (321)
..+.|+.||.+|+.+||..|..++||+..++++||.++||++++|++||||||+|+||.....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 445689999999999999999999999999999999999999999999999999999966543
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=4e-18 Score=128.84 Aligned_cols=62 Identities=29% Similarity=0.305 Sum_probs=57.7
Q ss_pred CCCCcccChHHHHHHHHHhhh-cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhccc
Q psy13592 212 KRSRQTYSRYQTLELEKEFHY-NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRP 273 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F~~-~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~ 273 (321)
.+.|+.|+..|+.+||..|.. ++||+..++++||.++||++++|++||||||+|+|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCC
Confidence 467899999999999999996 99999999999999999999999999999999999977443
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=127.88 Aligned_cols=61 Identities=36% Similarity=0.550 Sum_probs=58.0
Q ss_pred CCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
+|.|+.||..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 6789999999999999999999999999999999999999999999999999999986544
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=1.9e-18 Score=126.08 Aligned_cols=58 Identities=41% Similarity=0.633 Sum_probs=50.7
Q ss_pred CCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 214 SRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 214 ~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
.|+.||..|+.+||..|..++||+..++++||..+||++++|++||||||+|+|+.++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5799999999999999999999999999999999999999999999999999998653
No 41
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.6e-18 Score=129.71 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=56.8
Q ss_pred CCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhccc
Q psy13592 213 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRP 273 (321)
Q Consensus 213 R~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~ 273 (321)
++|+.||.+|+.+||..|..++||+..++++||..+||++++|+|||||||+|+|++.+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 4567799999999999999999999999999999999999999999999999999976544
No 42
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=128.99 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=60.1
Q ss_pred CCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccC
Q psy13592 210 GNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPN 274 (321)
Q Consensus 210 k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~ 274 (321)
..++.|+.||.+|+.+||..|..++||+..++++||.++||++++|++||||||+|+||.+....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 35678999999999999999999999999999999999999999999999999999999765443
No 43
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.73 E-value=4e-18 Score=122.89 Aligned_cols=57 Identities=46% Similarity=0.737 Sum_probs=54.8
Q ss_pred CCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhh
Q psy13592 211 NKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267 (321)
Q Consensus 211 ~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~K 267 (321)
++|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999986
No 44
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.1e-17 Score=131.99 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=55.1
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccCC
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPNI 275 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~~ 275 (321)
.||.+||.+||+.|..++||+..+|++||..|||+++||+|||||||+|||+++.....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~ 75 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEI 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhc
Confidence 79999999999999999999999999999999999999999999999999987655443
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=122.83 Aligned_cols=54 Identities=44% Similarity=0.800 Sum_probs=51.1
Q ss_pred cccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 216 QTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
|.||..|+.+||..|..++||+..+|++||..+||++++|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999985
No 46
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.72 E-value=3.9e-18 Score=135.99 Aligned_cols=64 Identities=22% Similarity=0.254 Sum_probs=57.0
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
....+|.|+.||..|+.+||..|..++||+..++++||.+|||++++|++||||||+|+||.+.
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 3456688999999999999999999999999999999999999999999999999999999654
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=9e-18 Score=133.59 Aligned_cols=66 Identities=29% Similarity=0.452 Sum_probs=62.0
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcC---------------CCchhhhhhhhhHHhHhhhhhcc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQ---------------LTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~---------------Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
..+.+|.|+.|+..|+.+||..|+.++||+..+|++||..++ |++.+|++||||||+|+|++...
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999999999999999 99999999999999999998776
Q ss_pred c
Q psy13592 273 P 273 (321)
Q Consensus 273 ~ 273 (321)
.
T Consensus 84 ~ 84 (95)
T 2cuf_A 84 A 84 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 48
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.72 E-value=3.9e-18 Score=124.62 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=48.6
Q ss_pred CCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhh
Q psy13592 209 GGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267 (321)
Q Consensus 209 ~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~K 267 (321)
.+.+|.|+.|+..|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 35678899999999999999999999999999999999999999999999999999986
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.6e-17 Score=125.66 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=59.8
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhh---cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHY---NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~---~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
.++.++.|+.|+..|+.+||..|.. ++||+..++++||.++||++.||++||||||+|+|+..+.
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3457788999999999999999977 9999999999999999999999999999999999996543
No 50
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.3e-17 Score=126.54 Aligned_cols=59 Identities=27% Similarity=0.380 Sum_probs=54.7
Q ss_pred CCCCcccChHHHHHHHHHh-hhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhh
Q psy13592 212 KRSRQTYSRYQTLELEKEF-HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEV 270 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F-~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~ 270 (321)
.+.|..++.+|+.+||+.| ..++||+..+|++||.++||++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4556678899999999999 9999999999999999999999999999999999999854
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.69 E-value=2.7e-17 Score=124.43 Aligned_cols=62 Identities=29% Similarity=0.498 Sum_probs=58.2
Q ss_pred CCCCcccChHHHHHHHHHh---hhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhccc
Q psy13592 212 KRSRQTYSRYQTLELEKEF---HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRP 273 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F---~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~ 273 (321)
+|.|+.|+..|+.+||..| ..++||+..++++||..+||++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 6789999999999999999 8999999999999999999999999999999999999866543
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.69 E-value=6.8e-17 Score=125.61 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=61.0
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhh---cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccCC
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHY---NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPNI 275 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~---~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~~ 275 (321)
+.+.++.|+.|+.+|+.+|+..|.. ++||+..+|++||.++||++.||++||||||+|+|+.......
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 4467888999999999999999987 5999999999999999999999999999999999987655443
No 53
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=126.87 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=55.2
Q ss_pred cccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccCC
Q psy13592 216 QTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPNI 275 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~~ 275 (321)
..||.+|+.+||..|..++||+..+|++||.+++|++++|+|||||||+|+|+.+.....
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 348999999999999999999999999999999999999999999999999987665543
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=1.2e-17 Score=130.50 Aligned_cols=62 Identities=29% Similarity=0.498 Sum_probs=57.8
Q ss_pred CCCCcccChHHHHHHHHHh---hhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhccc
Q psy13592 212 KRSRQTYSRYQTLELEKEF---HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRP 273 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F---~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~ 273 (321)
||.|+.|+..|+.+||..| ..++||+..++++||.++||++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 8999999999999999999999999999999999999976554
No 55
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=1.7e-17 Score=122.40 Aligned_cols=58 Identities=28% Similarity=0.423 Sum_probs=55.7
Q ss_pred CCCCCcccChHHHHHHHHHh---hhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 211 NKRSRQTYSRYQTLELEKEF---HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 211 ~rR~RT~fT~~Ql~~LEk~F---~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
.++.|+.|+..|+.+||..| ..++||+..++++||..+||++.||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999 89999999999999999999999999999999999987
No 56
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=124.11 Aligned_cols=59 Identities=47% Similarity=0.745 Sum_probs=54.7
Q ss_pred cccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcccC
Q psy13592 216 QTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPN 274 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~~ 274 (321)
..+|..|+.+||+.|..++||+..+|++||.++||++++|+|||||||+|+||.+....
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~~ 67 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSE 67 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSCC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhhh
Confidence 35789999999999999999999999999999999999999999999999999766544
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=5.7e-17 Score=118.07 Aligned_cols=56 Identities=30% Similarity=0.378 Sum_probs=53.6
Q ss_pred CCcccChHHHHHHHHHhhh---cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 214 SRQTYSRYQTLELEKEFHY---NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 214 ~RT~fT~~Ql~~LEk~F~~---~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
+|+.|+..|+.+||..|.. ++||+..++++||.++||++.||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3688999999999999999 9999999999999999999999999999999999974
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.67 E-value=3.3e-17 Score=142.86 Aligned_cols=65 Identities=26% Similarity=0.338 Sum_probs=52.7
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhcc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLR 272 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~ 272 (321)
.+++||.||.|+..|+.+||+.|..++||+..+|++||.+++|++++|+|||||||+|+||..+.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 34678899999999999999999999999999999999999999999999999999999997654
No 59
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=8.3e-17 Score=120.14 Aligned_cols=60 Identities=27% Similarity=0.328 Sum_probs=56.0
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhh-cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhh
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHY-NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~-~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~K 267 (321)
.++.+|.||.|+.+||..|+..|+. ++||+...|+.||.++||++++|+|||||||--.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 4567899999999999999999999 99999999999999999999999999999997544
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.6e-17 Score=129.67 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=60.4
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHc---------------------CCCchhhhhhhhhHHhHh
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHEL---------------------QLTERQIKIWFQNRRMKL 266 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l---------------------~Ls~~qVqvWFQNRRaK~ 266 (321)
.++.||.|+.|+..|+.+||+.|+.++||+..+|++||..+ .|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 34678899999999999999999999999999999999999 799999999999999999
Q ss_pred hhhhcc
Q psy13592 267 KKEVLR 272 (321)
Q Consensus 267 Kr~~~~ 272 (321)
|++.+.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 987654
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.66 E-value=4.8e-17 Score=141.06 Aligned_cols=61 Identities=28% Similarity=0.456 Sum_probs=55.1
Q ss_pred CCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 209 GGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 209 ~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
.++||.||.|+..|+.+||+.|..++||+..+|++||.++||++++|+|||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999985
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.66 E-value=5.5e-17 Score=138.81 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=55.9
Q ss_pred CCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 209 GGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 209 ~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
++++|.||.|+..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+||+
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4577889999999999999999999999999999999999999999999999999999985
No 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.65 E-value=1e-16 Score=119.34 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhh
Q psy13592 219 SRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEV 270 (321)
Q Consensus 219 T~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~ 270 (321)
|.+|+.+||..|..++||+..+|++||..+||++++|++||||||+|||+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 6899999999999999999999999999999999999999999999999743
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.65 E-value=5.8e-17 Score=130.26 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=54.0
Q ss_pred CCCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHH------------------cC---CCchhhhhhhhhHHhH
Q psy13592 207 TGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHE------------------LQ---LTERQIKIWFQNRRMK 265 (321)
Q Consensus 207 ~~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~------------------l~---Ls~~qVqvWFQNRRaK 265 (321)
...+.+|.|+.|+..|+.+||+.|+.++||+..+|++||.. || |++.+|+|||||||+|
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34567889999999999999999999999999999999999 88 9999999999999999
Q ss_pred hhhhhc
Q psy13592 266 LKKEVL 271 (321)
Q Consensus 266 ~Kr~~~ 271 (321)
+|++.+
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 987553
No 65
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.64 E-value=1.5e-16 Score=124.43 Aligned_cols=59 Identities=29% Similarity=0.359 Sum_probs=55.7
Q ss_pred CCCCCCcccChHHHHHHHHHhhh---cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 210 GNKRSRQTYSRYQTLELEKEFHY---NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 210 k~rR~RT~fT~~Ql~~LEk~F~~---~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
++++.|+.|+..|+.+||..|.. ++||+..++++||..+||++.||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 45667999999999999999999 999999999999999999999999999999999983
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.64 E-value=1e-16 Score=124.51 Aligned_cols=60 Identities=27% Similarity=0.336 Sum_probs=54.5
Q ss_pred CCCCcccChHHHHHHHHHhhh---cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 212 KRSRQTYSRYQTLELEKEFHY---NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F~~---~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
++.|+.|+..|+.+||..|.. ++||+..++++||..+||++.||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 345667999999999999999 999999999999999999999999999999999998543
No 67
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=135.94 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=58.1
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
.+++||.|+.|+..|+.+||+.|..++||+..+|++||.++||++++|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3467788999999999999999999999999999999999999999999999999999997
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=1e-16 Score=119.02 Aligned_cols=51 Identities=29% Similarity=0.368 Sum_probs=47.3
Q ss_pred hHHHHHHHHHh-hhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhh
Q psy13592 220 RYQTLELEKEF-HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEV 270 (321)
Q Consensus 220 ~~Ql~~LEk~F-~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~ 270 (321)
..|+.+||+.| ..++||+..+|.+||.+|+|+++||+|||||||+|+|+..
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 45899999999 5789999999999999999999999999999999999743
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-16 Score=117.03 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=50.1
Q ss_pred cccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 216 QTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
..++..|+.+||+.|..++||+..+|++||.++||++++|+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 44668999999999999999999999999999999999999999999999876
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.61 E-value=3.7e-16 Score=134.84 Aligned_cols=61 Identities=30% Similarity=0.426 Sum_probs=57.8
Q ss_pred CCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 209 GGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 209 ~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
++.||.|+.|+..|+.+||..|..++||+..+|++||.++||++++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4577889999999999999999999999999999999999999999999999999999984
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.58 E-value=7.9e-16 Score=133.57 Aligned_cols=64 Identities=27% Similarity=0.355 Sum_probs=54.9
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
+.+.||.|+.|+..|+.+||+.|..++||+..+|++||.++||++++|+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3467889999999999999999999999999999999999999999999999999999998543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=7.7e-15 Score=109.58 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=50.5
Q ss_pred cccChHHHHHHHHHhh---hcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhccc
Q psy13592 216 QTYSRYQTLELEKEFH---YNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRP 273 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~---~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~ 273 (321)
..|+.+|+.+|+..|. .++||+..++++||.++||++.||++||||||+|+|+.....
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 3689999999999999 999999999999999999999999999999999999865543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.44 E-value=2.5e-14 Score=127.82 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=54.0
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcC---------------------CCchhhhhhhhhHHhHh
Q psy13592 208 GGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQ---------------------LTERQIKIWFQNRRMKL 266 (321)
Q Consensus 208 ~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~---------------------Ls~~qVqvWFQNRRaK~ 266 (321)
..+.||.|+.|+..|+.+||+.|+.++||+..+|++||..++ |++.+|++||||||+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 356788999999999999999999999999999999999999 99999999999999998
Q ss_pred hh
Q psy13592 267 KK 268 (321)
Q Consensus 267 Kr 268 (321)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.4e-13 Score=100.57 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhh
Q psy13592 220 RYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267 (321)
Q Consensus 220 ~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~K 267 (321)
.+|+..||..|..+++|+..+++.||..+||++++|||||||||++..
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 568999999999999999999999999999999999999999998533
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.33 E-value=7.2e-13 Score=120.09 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=53.5
Q ss_pred CCCCCCCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcC---------------------CCchhhhhhhhhHHhH
Q psy13592 207 TGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQ---------------------LTERQIKIWFQNRRMK 265 (321)
Q Consensus 207 ~~~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~---------------------Ls~~qVqvWFQNRRaK 265 (321)
..++.||.|+.|++.|+.+||+.|++++||+..+|++||..++ |++.+|++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3456788999999999999999999999999999999999987 8999999999999987
Q ss_pred h
Q psy13592 266 L 266 (321)
Q Consensus 266 ~ 266 (321)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=101.50 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=53.1
Q ss_pred cccChHHHHHHHHHhhh---cccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhccc
Q psy13592 216 QTYSRYQTLELEKEFHY---NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRP 273 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~~---~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~~~ 273 (321)
..|+.+++.+|+..|.. ++||+..++++||.++||++.||++||+|||+|+++.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 35889999999999977 89999999999999999999999999999999999876544
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.26 E-value=1.7e-12 Score=124.86 Aligned_cols=56 Identities=29% Similarity=0.457 Sum_probs=52.9
Q ss_pred CCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhh
Q psy13592 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~K 267 (321)
++.|+.++..|+..||+.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34577899999999999999999999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.64 E-value=3.3e-09 Score=70.10 Aligned_cols=23 Identities=70% Similarity=1.037 Sum_probs=19.7
Q ss_pred hhhhhhhhhHHhHhhhhhcccCC
Q psy13592 253 RQIKIWFQNRRMKLKKEVLRPNI 275 (321)
Q Consensus 253 ~qVqvWFQNRRaK~Kr~~~~~~~ 275 (321)
+||+|||||||+||||++.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999998876443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.83 E-value=0.09 Score=39.05 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhh
Q psy13592 222 QTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQ 260 (321)
Q Consensus 222 Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQ 260 (321)
-.+.|+..|...+.+.......|+.+.+|+..||+-||-
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 358999999999999999999999999999999999995
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=68.85 E-value=5.3 Score=27.42 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=29.5
Q ss_pred CcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhh
Q psy13592 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQ 260 (321)
Q Consensus 215 RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQ 260 (321)
|..|+.+....+...+. ..........++|.++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~-~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYR-NDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHH-HCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHH-cCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 34678776655533333 2222111266899999999999999975
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=66.61 E-value=9.6 Score=28.23 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=31.4
Q ss_pred CCCCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhh
Q psy13592 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQN 261 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQN 261 (321)
++.+..|+.++...+...+.. . ....++|+++|++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g----~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-G----ESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-T----CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-C----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 345667888875554444532 2 23568899999999999999853
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=63.85 E-value=6.3 Score=29.36 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=35.5
Q ss_pred cChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 218 YSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 218 fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
++..+..+|.-.|.. .....++|..+|++...|+.+...-|.|.|+...
T Consensus 38 L~~~~r~vl~l~~~~-----g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYR-----GWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTS-----CCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc-----CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 556666666554322 2346789999999999999999887887776543
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=60.78 E-value=14 Score=28.95 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=36.4
Q ss_pred CCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhH
Q psy13592 214 SRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMK 265 (321)
Q Consensus 214 ~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK 265 (321)
.|..||.++...+-..+....... ..+||+.+|++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 567899998877766664443332 3368999999999999999877654
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=57.19 E-value=4.6 Score=25.86 Aligned_cols=40 Identities=8% Similarity=0.158 Sum_probs=27.1
Q ss_pred cChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhH
Q psy13592 218 YSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNR 262 (321)
Q Consensus 218 fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNR 262 (321)
++.++...+...+... ....+||+.+|++...|..|+...
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4555555544444432 235689999999999999998643
No 85
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=56.82 E-value=0.45 Score=40.22 Aligned_cols=30 Identities=7% Similarity=-0.002 Sum_probs=21.6
Q ss_pred CCCCCCCcccChHHHHHHHHHhhhcccccH
Q psy13592 209 GGNKRSRQTYSRYQTLELEKEFHYNKYLSR 238 (321)
Q Consensus 209 ~k~rR~RT~fT~~Ql~~LEk~F~~~~yPs~ 238 (321)
.+.||.||.|+..|++.|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 356789999999999999999999999864
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=55.82 E-value=15 Score=22.73 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=26.7
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhh
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQ 260 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQ 260 (321)
.++..+...+...+... . ...++|+.+|++...|..|..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHh
Confidence 45666654444444322 2 366899999999999999985
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=55.65 E-value=10 Score=26.07 Aligned_cols=48 Identities=13% Similarity=-0.057 Sum_probs=35.3
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
.++..+..+|.-.|... ....++|..+|++...|+.+...-|.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36677777777655332 3467899999999999999997777766653
No 88
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=54.24 E-value=14 Score=27.71 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=35.3
Q ss_pred cccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 216 QTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
..++..+.++|.-.++- ....++|..+|+++..|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 35788888888775332 234789999999999999988766666654
No 89
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=52.46 E-value=24 Score=27.03 Aligned_cols=47 Identities=21% Similarity=0.043 Sum_probs=35.3
Q ss_pred CcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhh
Q psy13592 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267 (321)
Q Consensus 215 RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~K 267 (321)
...++..+.++|.-.++- ..-.++|..+++++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G------~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG------FLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT------CCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 456899999998765432 23488999999999999998876555543
No 90
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=44.85 E-value=27 Score=25.36 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=36.1
Q ss_pred CcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 215 RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
-..++..+.++|.-.++ .....++|+.+|+++..|+.+..+-+.|.+.
T Consensus 19 ~~~Lt~~e~~vl~l~~~------g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ------GLPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGGSCHHHHHHHHHHTT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HccCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 44688888888877432 2356789999999999999988766666554
No 91
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=44.19 E-value=24 Score=24.30 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=35.1
Q ss_pred CcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 215 RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
-..++..+.++|.-.++ .+ ...++|..+|++...|+.+...-+.|.+.
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 34578888888877432 22 45789999999999999988765555543
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=44.04 E-value=22 Score=28.00 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=34.7
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhhc
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~~ 271 (321)
.++..+..+|. . |.......++|..+|++...|+.+...-|.|.|+.-.
T Consensus 109 ~L~~~~r~v~~-~-----~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-----LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-H-----HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-----HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 2 2333456889999999999999999877777776543
No 93
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.78 E-value=24 Score=24.41 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=35.4
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
.++..+.++|.-.|-...+ ....-+++|..+|++...|+.+...-+.|.|+
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3677788888777621100 12345789999999999999988766666654
No 94
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=42.29 E-value=21 Score=25.13 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=32.8
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
.++..+.++|.-.+. .....++|..+|++...|+.+..+-+.|.+.
T Consensus 16 ~L~~~e~~vl~l~~~------g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVVA------GLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHTT------TCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 366777777766322 2235689999999999999988766666554
No 95
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.71 E-value=34 Score=23.95 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=35.6
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhh
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~K 267 (321)
.++..+..+|.-.|..... ....-.++|..+|++...|+.+...-+.|.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4678888888877741000 1123568999999999999999876666666
No 96
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=40.44 E-value=34 Score=26.77 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=36.5
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhh
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEV 270 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~ 270 (321)
.+++.+..+|.-.|... ....++|..+|++...|+.|...-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46677777776654332 34578999999999999999988777776643
No 97
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=39.74 E-value=57 Score=24.45 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=37.7
Q ss_pred CCcccChHHHHHHHHHhhh-----cccccHHHHHHHHHHcC--CCchhhhhhhh
Q psy13592 214 SRQTYSRYQTLELEKEFHY-----NKYLSRKRRIEIAHELQ--LTERQIKIWFQ 260 (321)
Q Consensus 214 ~RT~fT~~Ql~~LEk~F~~-----~~yPs~~~r~~LA~~l~--Ls~~qVqvWFQ 260 (321)
....++.+++..|+..|.. +.+.+..+...+...+| +++..|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456889999999999864 45899999999888886 57788888885
No 98
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=38.53 E-value=44 Score=24.67 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=29.1
Q ss_pred CcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhh
Q psy13592 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQ 260 (321)
Q Consensus 215 RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQ 260 (321)
|..|+.++....-..+... ......++|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS---DGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG---GGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc---CCChHHHHHHHHCcCHHHHHHHHH
Confidence 3467777665544444322 012367899999999999999985
No 99
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.91 E-value=34 Score=25.01 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=35.0
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
.++..+..+|...|-...- ......++|..+|++...|+.+...-+.|.|+
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3667777887776631000 12346789999999999999998766666554
No 100
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=35.81 E-value=34 Score=26.65 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=34.7
Q ss_pred cChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhh
Q psy13592 218 YSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEV 270 (321)
Q Consensus 218 fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~ 270 (321)
++..+..+|.-.|.. ...-.++|..+|+++..|+.+...-|.+.|+..
T Consensus 26 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLE-----DYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTS-----CCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc-----CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 556666666554322 234678999999999999999987777777643
No 101
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.98 E-value=27 Score=25.73 Aligned_cols=47 Identities=19% Similarity=0.056 Sum_probs=34.7
Q ss_pred cccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 216 QTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
..++..+.++|.-.++- ....++|..+|+++..|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKG------YSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHTT------CCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 45788888888764321 234679999999999999998766666554
No 102
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=34.55 E-value=31 Score=29.06 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=35.2
Q ss_pred cChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 218 YSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 218 fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
++..+..+|.-.|.. .....++|..+|++...|+.+...-|.|.|+.
T Consensus 188 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 556666676665532 33567899999999999999998777777764
No 103
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=33.38 E-value=23 Score=30.83 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=32.5
Q ss_pred CCcccChHH-HHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHh
Q psy13592 214 SRQTYSRYQ-TLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRM 264 (321)
Q Consensus 214 ~RT~fT~~Q-l~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRa 264 (321)
.|...+.++ ++.-.+.|....|- .....+||+++|++...|-..|.||..
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAE-TFSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCC-CCCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCcCHHHHHHHcCCHHH
Confidence 344455543 33444556665554 344677899999999999999999743
No 104
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.09 E-value=39 Score=27.57 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=33.7
Q ss_pred cChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhhh
Q psy13592 218 YSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEV 270 (321)
Q Consensus 218 fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~~ 270 (321)
++..+..+|.-.|- ....-.++|..+|+++..|+.+...-|.|.|+.-
T Consensus 141 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLREL-----DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHT-----TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555555544332 2234578999999999999999987777777643
No 105
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.87 E-value=29 Score=23.12 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=22.7
Q ss_pred HHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 241 RIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 241 r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
..++|..+|+++..|+.+..+-+.|.+.
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 4689999999999999988766666543
No 106
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=31.76 E-value=48 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=37.6
Q ss_pred CcccChHHHHHHHHHhhh-----cccccHHHHHHHHHHcCCCchhhhhhhh
Q psy13592 215 RQTYSRYQTLELEKEFHY-----NKYLSRKRRIEIAHELQLTERQIKIWFQ 260 (321)
Q Consensus 215 RT~fT~~Ql~~LEk~F~~-----~~yPs~~~r~~LA~~l~Ls~~qVqvWFQ 260 (321)
...++..++..|+..|.. +.+.+..+...+...+|++...|+.+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 346788899999999854 4578899999988999999988988885
No 107
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=30.05 E-value=39 Score=27.21 Aligned_cols=48 Identities=6% Similarity=0.057 Sum_probs=34.6
Q ss_pred ccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhhh
Q psy13592 217 TYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr~ 269 (321)
.++..+.++|.-. |.....-.++|..+|+++..|+.+...-|.+.|+.
T Consensus 93 ~Lp~~~r~vl~L~-----~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 93 RMTPLSRQALLLT-----AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp TSCTTHHHHHTTT-----SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHH-----HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3566666666543 33334568899999999999999998777776653
No 108
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=29.95 E-value=64 Score=23.41 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=34.5
Q ss_pred ccChHHHHHHHHHhhh-----cccccHHHHHHHHHHcCCCchhhhhhhh
Q psy13592 217 TYSRYQTLELEKEFHY-----NKYLSRKRRIEIAHELQLTERQIKIWFQ 260 (321)
Q Consensus 217 ~fT~~Ql~~LEk~F~~-----~~yPs~~~r~~LA~~l~Ls~~qVqvWFQ 260 (321)
.++.++...++..|.. ..+.+..+...+...+|++...|+..|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678888999998854 4578888888888888999888876664
No 109
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=27.85 E-value=84 Score=23.49 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=29.9
Q ss_pred cccChHHHHHHHHHh-hhc-cccc-HHHHHHHHHHcCCCchhhhhhhhh
Q psy13592 216 QTYSRYQTLELEKEF-HYN-KYLS-RKRRIEIAHELQLTERQIKIWFQN 261 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F-~~~-~yPs-~~~r~~LA~~l~Ls~~qVqvWFQN 261 (321)
..|+.++....-..+ +.. .+.+ .....++|..+|++...|..|..-
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 457877665444433 321 1222 245678999999999999999753
No 110
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.47 E-value=84 Score=23.27 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHh
Q psy13592 214 SRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKL 266 (321)
Q Consensus 214 ~RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~ 266 (321)
....+|..+.++|.-..+ .....++|..|++++..|+....+=+.|.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~------G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK------GFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHHT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 345688999999876552 23467899999999999998776544443
No 111
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.53 E-value=67 Score=27.65 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=35.7
Q ss_pred CcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhh
Q psy13592 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267 (321)
Q Consensus 215 RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~K 267 (321)
...+|..+.++|.-..+ ...-+++|..|+++++.|+....+-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK------GKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHT------TCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 45689999999876432 224578999999999999998876666543
No 112
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=25.08 E-value=71 Score=23.36 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=34.1
Q ss_pred cChHHHHHHHHHhhh-----cccccHHHHHHHHHHcCCCchhhhhhhh
Q psy13592 218 YSRYQTLELEKEFHY-----NKYLSRKRRIEIAHELQLTERQIKIWFQ 260 (321)
Q Consensus 218 fT~~Ql~~LEk~F~~-----~~yPs~~~r~~LA~~l~Ls~~qVqvWFQ 260 (321)
++.++...|++.|.. ..+.+..+...+...+|+++..|+.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788889988853 4578888888888888999888887764
No 113
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=24.33 E-value=34 Score=27.61 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHH
Q psy13592 222 QTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRR 263 (321)
Q Consensus 222 Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRR 263 (321)
-++.-...|....| . .....||+..|++...|-..|.+|-
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHH
Confidence 45556667888888 5 7889999999999999999999874
No 114
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=24.28 E-value=58 Score=21.19 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhh
Q psy13592 220 RYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQ 260 (321)
Q Consensus 220 ~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQ 260 (321)
..+...+...+... ....++|+.+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-----~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-----YTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-----CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 45555544444322 2466899999999999999874
No 115
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=23.41 E-value=1.1e+02 Score=24.47 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=35.7
Q ss_pred CCCCcccChHHHHHHHHHh-hhcccccHHHHHHHH-HHc--CCCchhhhhhhhhH
Q psy13592 212 KRSRQTYSRYQTLELEKEF-HYNKYLSRKRRIEIA-HEL--QLTERQIKIWFQNR 262 (321)
Q Consensus 212 rR~RT~fT~~Ql~~LEk~F-~~~~yPs~~~r~~LA-~~l--~Ls~~qVqvWFQNR 262 (321)
++.|.++|.+|...|-..+ +.++-....+....| .++ +++...|.-|..++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678899999988888877 555544443333322 267 78888999999764
No 116
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.58 E-value=36 Score=24.01 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCCchhhhhhhhhHH
Q psy13592 240 RRIEIAHELQLTERQIKIWFQNRR 263 (321)
Q Consensus 240 ~r~~LA~~l~Ls~~qVqvWFQNRR 263 (321)
...+||+.+|++...|..|...++
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCC
Confidence 357899999999999999998765
No 117
>2cq7_A Cysteine-rich secretory protein-2; crisp, crisp-2, TPX-1, CRD, cystein-rich domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.41 E-value=25 Score=24.02 Aligned_cols=9 Identities=44% Similarity=1.014 Sum_probs=7.7
Q ss_pred CCCCccccc
Q psy13592 49 PNPCQYEDR 57 (321)
Q Consensus 49 ~~~~~~~~~ 57 (321)
-|||.|+|.
T Consensus 6 TNpC~y~D~ 14 (49)
T 2cq7_A 6 SGSCQYQDL 14 (49)
T ss_dssp CSCCSCCCS
T ss_pred CCCCccccc
Confidence 589999986
No 118
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.16 E-value=31 Score=22.82 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCchhhhhhhhhHH
Q psy13592 241 RIEIAHELQLTERQIKIWFQNRR 263 (321)
Q Consensus 241 r~~LA~~l~Ls~~qVqvWFQNRR 263 (321)
..+||+.+|++...|..|...++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999997643
No 119
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.13 E-value=81 Score=27.59 Aligned_cols=47 Identities=21% Similarity=0.038 Sum_probs=35.8
Q ss_pred cccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhhh
Q psy13592 216 QTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~Kr 268 (321)
..++..+.++|.-.++ ...-+++|+.||+++..|++...+-|.|.|.
T Consensus 196 ~~L~~~erevl~L~~~------G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRK------GLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4588888888876532 2346789999999999999988776666654
No 120
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.48 E-value=65 Score=24.64 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=34.3
Q ss_pred CcccChHHHHHHHHHhhh-----cccccHHHHHHHHHHcCCCchhhhhhhh
Q psy13592 215 RQTYSRYQTLELEKEFHY-----NKYLSRKRRIEIAHELQLTERQIKIWFQ 260 (321)
Q Consensus 215 RT~fT~~Ql~~LEk~F~~-----~~yPs~~~r~~LA~~l~Ls~~qVqvWFQ 260 (321)
...++.++...|+..|.. ..+.+..+...+...++++...|+.+|.
T Consensus 13 ~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 13 PWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345677788888888854 3578888888877778898888877664
No 121
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=21.46 E-value=33 Score=22.79 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCchhhhhhhhhHH
Q psy13592 241 RIEIAHELQLTERQIKIWFQNRR 263 (321)
Q Consensus 241 r~~LA~~l~Ls~~qVqvWFQNRR 263 (321)
..+||+.+|++...|..|...++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 57899999999999999987643
No 122
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=21.15 E-value=1.1e+02 Score=26.17 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=35.4
Q ss_pred CcccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhhHHhHhh
Q psy13592 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267 (321)
Q Consensus 215 RT~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQNRRaK~K 267 (321)
...+|..++++|.-..+ ...-+++|..|++++..|+...++-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV------GKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34689999999866432 234678999999999999998876665543
No 123
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.34 E-value=1.3e+02 Score=23.54 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=29.0
Q ss_pred cccChHHHHHHHHHhhhcccccHHHHHHHHHHcCCCchhhhhhhhh
Q psy13592 216 QTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQN 261 (321)
Q Consensus 216 T~fT~~Ql~~LEk~F~~~~yPs~~~r~~LA~~l~Ls~~qVqvWFQN 261 (321)
..++.++...+...+.. . ....++|+.+|++...|..|+..
T Consensus 31 ~~~s~e~r~~iv~~~~~-G----~s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-G----VRPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-T----CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-C----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 35777766655555542 2 23567899999999999999964
Done!