RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13592
(321 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 103 bits (259), Expect = 4e-28
Identities = 31/57 (54%), Positives = 41/57 (71%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
+R R T++ Q ELEKEF N+Y S + R E+A +L LTERQ+K+WFQNRR K K+
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in
the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 94.2 bits (235), Expect = 1e-24
Identities = 34/58 (58%), Positives = 41/58 (70%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
+R R ++ Q ELEKEF N Y SR+ R E+A EL LTERQ+KIWFQNRR KLK+
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 93.5 bits (233), Expect = 2e-24
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 211 NKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267
+R R +++ Q ELEKEF N Y SR+ R E+A +L L+ERQ+K+WFQNRR K K
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 56.3 bits (136), Expect = 1e-09
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
K R+ + Q + LE+EF N Y S RI+++ L + + ++IWFQN+R K KK+
Sbjct: 52 KSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKK 109
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 29.0 bits (66), Expect = 0.31
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 232 YNKYLSRKRRIEIAHELQLTERQIKIWFQNRRM 264
+N Y S + + E+A + L+ +QI WF N R
Sbjct: 7 HNPYPSEEEKSELARQTGLSRKQIDNWFINARR 39
>gnl|CDD|203694 pfam07600, DUF1564, Protein of unknown function (DUF1564). A
family of paralogous proteins in Leptospira interrogans.
Several have been annotated as possible CopG-like
transcriptional regulators (see pfam01402).
Length = 167
Score = 30.4 bits (69), Expect = 0.83
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 226 LEKEFH-----YNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVLRPN 274
L+K+ Y KYL + + K +Q + +KLK+ RPN
Sbjct: 44 LKKKLPFLLKRYQKYLLSSKFLGKKAG--------KTLYQKKNLKLKRMSFRPN 89
>gnl|CDD|118503 pfam09974, DUF2209, Uncharacterized protein conserved in archaea
(DUF2209). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 128
Score = 29.4 bits (66), Expect = 1.3
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 226 LEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
L F Y + ++ + IE+AH + + R++ I +LK E
Sbjct: 91 LSAPFKYQETVAEREAIEMAHHVSYSVRKLLI------KELKIE 128
>gnl|CDD|227258 COG4921, COG4921, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 131
Score = 29.1 bits (65), Expect = 1.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 226 LEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
L F Y + ++ + IE+AH L + R++ I M+LK
Sbjct: 93 LGAPFKYAETVAEREAIEMAHHLSYSVRRLLI------MELKVA 130
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 29.7 bits (67), Expect = 1.9
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 27 NQTFHPNQYYEPYNNNCPTKSEPNPCQYEDRDARYFEKD---AKYFAKDANSFDKDPAK- 82
+ F+ N Y E NN+ + E D K A D +
Sbjct: 91 SIKFYLNYYLEIINNDVEDEIELLLFSKNLEYILKKILDKIEKFDEIKGAKKKDFFKSIN 150
Query: 83 --YYDNFLDHNTMNYNHMNAFNQFHMKSNPNHTDYLRT 118
DNF+D N Q ++ N D L
Sbjct: 151 IYEIDNFIDKTLSKILDDNIVFQDNL--EKNIDDKLSN 186
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 29.4 bits (66), Expect = 3.0
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 36 YEPYNNNCPTKSEPNPCQYEDRDARYFEKDAKYFAKDANSFDKDPAKYYDNFLDHNTM-- 93
Y+ NN TK+ + D D + K + F K+ + Y NF D +
Sbjct: 103 YDKEKNNQETKNSGELKTFADFDGKN-NKSVENFRKNFGNLKNVKKVYLINFADSKFLMT 161
Query: 94 NYNHMNAFNQFHMKSN 109
N ++N+F F +K +
Sbjct: 162 NLENVNSFYLF-IKEH 176
>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
Length = 486
Score = 28.8 bits (64), Expect = 4.6
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 35 YYEPYNNNCPTKSEPNPCQYEDRDARYFEKDAKYFAKDANSFDKDPAKYYDNFLDHNTMN 94
YY+ + NC T N Y E + + F P +N+++HN
Sbjct: 102 YYKSVDMNCTTSVGVN----------YSEYRLEIYLNQRTPFSGTPPGDEENYVNHNATK 151
Query: 95 YNHMNAFNQFHMKSN 109
+ F+
Sbjct: 152 DQTLLLFSTAERSVK 166
>gnl|CDD|111032 pfam02090, SPAM, Salmonella surface presentation of antigen gene
type M protein.
Length = 147
Score = 27.7 bits (61), Expect = 5.0
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQ 254
++ R+ + L KE +Y +++ R++R+ I E+Q E +
Sbjct: 100 EKKREEFQEKSKYWLRKEGNYQRWIIRQKRLYIQREIQQEEAE 142
>gnl|CDD|235098 PRK03007, PRK03007, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 428
Score = 28.0 bits (63), Expect = 6.5
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 187 DGATLYPWMKSNHDASYSCKTG 208
D A YPW + D S K G
Sbjct: 163 DAACKYPWTRGEADGSPRRKFG 184
>gnl|CDD|185235 PRK15335, PRK15335, type III secretion system protein SpaM;
Provisional.
Length = 147
Score = 27.3 bits (60), Expect = 6.6
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQ 254
++ R+ + + L KE +Y +++ R++R I E+Q E +
Sbjct: 100 EKKREEFQKKSKYWLRKEGNYQRWIIRQKRFYIQREIQQEEAE 142
>gnl|CDD|107299 cd06304, PBP1_BmpA_like, Periplasmic binding component of a family
of basic membrane lipoproteins from Borrelia and various
putative lipoproteins from other bacteria. Periplasmic
binding component of a family of basic membrane
lipoproteins from Borrelia and various putative
lipoproteins from other bacteria. These outer membrane
proteins include Med, a cell-surface localized protein
regulating the competence transcription factor gene comK
in Bacillus subtilis, and PnrA, a periplasmic purine
nucleoside binding protein of an ATP-binding cassette
(ABC) transport system in Treponema pallidum. All
contain the type I periplasmic sugar-binding
protein-like fold.
Length = 260
Score = 27.5 bits (62), Expect = 8.4
Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 59 ARYFEKDAKYFAKDANSFDKDPAK 82
A+ D SF DPAK
Sbjct: 145 AKSVNPDITVLVIYTGSFF-DPAK 167
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 27.4 bits (61), Expect = 9.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 139 EMVDGKPPGFN 149
EMVDG+PP FN
Sbjct: 207 EMVDGEPPYFN 217
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.128 0.390
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,903,163
Number of extensions: 1465404
Number of successful extensions: 967
Number of sequences better than 10.0: 1
Number of HSP's gapped: 966
Number of HSP's successfully gapped: 29
Length of query: 321
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 224
Effective length of database: 6,635,264
Effective search space: 1486299136
Effective search space used: 1486299136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.4 bits)