RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13592
(321 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 96.0 bits (239), Expect = 5e-26
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
+R+R ++++ Q LEKEF Y R +A ++ L E +I++WF NRR K ++E
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 59
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 94.1 bits (234), Expect = 2e-25
Identities = 47/55 (85%), Positives = 52/55 (94%)
Query: 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
RQTY+RYQTLELEKEFH+N+YL+R+RRIEIAH L LTERQIKIWFQNRRMK KKE
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 93.7 bits (233), Expect = 3e-25
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
K + +S QT+ELEK+F KYLS R +A LQL+ERQ+K WFQNRR K ++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 92.8 bits (230), Expect = 2e-24
Identities = 41/85 (48%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 189 ATLYPWMKSNHDASYSCKTGGGN----KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEI 244
A + WMK + + K R ++ Q ELEKEFH+NKYLSR RR+EI
Sbjct: 1 ARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEI 60
Query: 245 AHELQLTERQIKIWFQNRRMKLKKE 269
A L+L E Q+KIWFQNRRMK KK
Sbjct: 61 AATLELNETQVKIWFQNRRMKQKKR 85
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 92.2 bits (229), Expect = 2e-24
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 200 DASYSCKTGGGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWF 259
+ + + ++ R Y+++QTLELEKEF +N YL+R RR E+A L LTERQ+KIWF
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 61
Query: 260 QNRRMKLKKE 269
QNRRMK+KK
Sbjct: 62 QNRRMKMKKI 71
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 89.2 bits (221), Expect = 2e-23
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
++ R YS+ Q ELE+E+ NK++++ +R +I+ L+ERQI IWFQNRR+K KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 85.7 bits (212), Expect = 4e-22
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
R R + Q L + N + ++ L+ R I++WFQN+R K KK
Sbjct: 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 84.9 bits (210), Expect = 6e-22
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 213 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMK 265
R R +S Q L++EF+ N+YL+ +RR +++ EL L E QIKIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 83.8 bits (207), Expect = 2e-21
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
+RSR T+S Q ELE+ F +Y R E+A LTE +I++WFQNRR +L+K+
Sbjct: 3 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 82.6 bits (204), Expect = 5e-21
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 213 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
R R ++R Q LEKEF+ Y+SR RR E+A +L L E IK+WFQNRRMK K++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 82.3 bits (203), Expect = 6e-21
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
++ R ++ Q L LE++F +YLS R E + L LTE Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 81.5 bits (201), Expect = 1e-20
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 213 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
+ R T S LE+ F + S + + +A EL L + +++WF NRR + K+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 81.9 bits (202), Expect = 1e-20
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
++ R +S+ Q ELE+ F KYLS R +A + LT Q+KIWFQN R K+K++
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 81.2 bits (200), Expect = 2e-20
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
+R R ++ Q +LE F N+Y R EIA LTE ++++WF+NRR K +K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 80.9 bits (199), Expect = 4e-20
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 15/72 (20%)
Query: 213 RSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIA---------------HELQLTERQIKI 257
SR T+ + +E F+ N+Y +R EIA ++T ++
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 258 WFQNRRMKLKKE 269
WF NRR ++K+
Sbjct: 62 WFANRRKEIKRR 73
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 79.4 bits (196), Expect = 9e-20
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 211 NKRSRQTYSRYQTLELEKEF---HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267
K R ++ T + + Y + + +IA + LT Q+ WF N R ++
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61
Query: 268 K 268
+
Sbjct: 62 Q 62
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 78.8 bits (194), Expect = 2e-19
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
+R+R T++ Q ELE+ F +YL+ R +++ +L L Q+KIWF+NRR + K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 59
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 76.8 bits (189), Expect = 7e-19
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRR 263
R ++ Q L F NK S++ +I I+ +L L + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 76.2 bits (187), Expect = 2e-18
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 212 KRSRQTYSRYQTLELEKEFHY-NKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEV 270
T + Q LE F+ NK+ IA E LTE Q + WF+ R + ++
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 271 LRP 273
P
Sbjct: 62 GLP 64
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 75.0 bits (184), Expect = 4e-18
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
KR R + LE F S ++ IA++L L + +++WF NRR K K+
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 74.5 bits (183), Expect = 4e-18
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267
+ + S LE+ F + L+ K + E+A + +T Q+++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 74.4 bits (183), Expect = 4e-18
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 222 QTLELEKEF-HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
LEK F K+ KR ++ +L R I+ WF+ RR + K
Sbjct: 4 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 75.1 bits (184), Expect = 6e-18
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKE 269
++ R +++ QT ELE+ F +YLS R +A ++LT Q+KIWFQN R K K+
Sbjct: 10 RKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 74.1 bits (182), Expect = 7e-18
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNK---YLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
+ R +++ LE F N YL K + L+ QIK W NRR K K
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 74.0 bits (181), Expect = 1e-17
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 208 GGGNKRSRQTYSRYQTLELEKEFH-YNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKL 266
G RSR S L+ H Y ++ ++ +L L + I +FQN+R +
Sbjct: 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63
Query: 267 KKE 269
K
Sbjct: 64 KHS 66
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 73.1 bits (179), Expect = 3e-17
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 212 KRSRQTYSRYQTLELEK---EFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
+R R+ +++ T L + N Y S + + E+A + +T Q+ WF N+R++ KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 269 EVLR 272
+ +
Sbjct: 62 NIGK 65
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 71.3 bits (175), Expect = 7e-17
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 213 RSRQTYSRYQTLELEKEF-HYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLK 267
+ LEK F KY KR ++ +L + R+I+ WF++RR + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 68.4 bits (167), Expect = 9e-16
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
R + + LEK F N+ + + IA +L + + I++WF NRR K K+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 65.9 bits (160), Expect = 1e-14
Identities = 11/68 (16%), Positives = 27/68 (39%)
Query: 212 KRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKKEVL 271
+ + + Q L+ F + L+ + + + +LT R+I WF ++ +
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64
Query: 272 RPNISSTT 279
+ I +
Sbjct: 65 KMEIDESN 72
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 64.3 bits (156), Expect = 5e-14
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 197 SNHDASYSCKTGGGNKRSRQTYSRYQTLELEKEFH----YNKYLSRKRRIEIAHELQLTE 252
S S +GG KR R ++ Q ++ + + E +
Sbjct: 3 SGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRR 62
Query: 253 RQIKIWFQNRRMKLKKE 269
+ +KIW N +
Sbjct: 63 QVLKIWMHNNKNSGPSS 79
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 62.8 bits (152), Expect = 1e-13
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 209 GGNKRSRQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHELQLTERQIKIWFQNRRMKLKK 268
G + S + ++ Q L+ F ++ R+ ++ L +I WF + R LK
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
Query: 269 EVLR 272
L+
Sbjct: 61 GQLK 64
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 61.3 bits (148), Expect = 6e-13
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 21/76 (27%)
Query: 215 RQTYSRYQTLELEKEFHYNKYLSRKRRIEIAHEL---------------------QLTER 253
R + L + + K S++ R + E +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 254 QIKIWFQNRRMKLKKE 269
++ WF NRR +
Sbjct: 61 RVYNWFANRRKEEAFR 76
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 26.9 bits (60), Expect = 0.75
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 243 EIAHELQLTERQIKIWFQNRRMKLKKEVLRP 273
EIA + ++ R + + ++P
Sbjct: 39 EIAAIMDCPVGTVRSRIFRAREAIDNK-VQP 68
>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal
domain {Human (Homo sapiens), HLA-DQ group [TaxId:
9606]}
Length = 97
Score = 24.6 bits (53), Expect = 7.9
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 171 VQDSCSVSSQQDHEGEDGATL-------YP------WMKSNHDASYSCKTGGGNKRSRQT 217
V+ + ++S + L YP W +++ + + + + T
Sbjct: 1 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 60
Query: 218 YSRYQTLELEKE 229
+ LE+ +
Sbjct: 61 FQILVMLEMTPQ 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.390
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,219,353
Number of extensions: 57519
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 47
Length of query: 321
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,240,546
Effective search space: 292768856
Effective search space used: 292768856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)