Query psy13593
Match_columns 264
No_of_seqs 124 out of 1383
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 23:09:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qye_A TBC1 domain family memb 100.0 5E-57 1.7E-61 388.8 29.6 262 2-264 48-309 (331)
2 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 4.8E-55 1.6E-59 373.1 23.7 253 2-264 22-276 (310)
3 2qq8_A TBC1 domain family memb 100.0 3.1E-53 1E-57 364.9 26.1 248 2-264 37-310 (334)
4 2qfz_A TBC1 domain family memb 100.0 3.3E-52 1.1E-56 360.6 17.3 257 2-263 39-333 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 3.6E-51 1.2E-55 358.8 20.3 255 2-262 22-378 (396)
6 4hl4_A TBC1 domain family memb 100.0 9.3E-50 3.2E-54 337.4 14.7 246 2-262 33-285 (292)
7 3qwl_A TBC1 domain family memb 100.0 2.3E-40 7.8E-45 277.8 6.9 233 1-262 38-282 (294)
8 1dxs_A P53-like transcription 47.9 19 0.00063 23.1 3.2 25 6-30 41-65 (80)
9 1rdt_E LXXLL motif coactivator 25.9 40 0.0014 16.2 1.6 16 3-18 10-25 (26)
10 2dhy_A CUE domain-containing p 22.5 1.1E+02 0.0039 18.7 3.7 27 231-257 16-42 (67)
11 1p3q_Q VPS9P, vacuolar protein 21.7 1.2E+02 0.004 17.8 3.4 26 232-257 11-36 (54)
No 1
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=5e-57 Score=388.77 Aligned_cols=262 Identities=56% Similarity=0.985 Sum_probs=245.1
Q ss_pred ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhcchhHHHHHhhhcccCCCCCCCCCCCC
Q psy13593 2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLG 81 (264)
Q Consensus 2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~ 81 (264)
+.++|++++++|||+.+|+.||+.++|..+..... .+........|+++.++..+..++|++|++||+|++++|..+.+
T Consensus 48 ~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~-~~~~~~~~~~Y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~ 126 (331)
T 3qye_A 48 DMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQF-PSKQQPKDVPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLG 126 (331)
T ss_dssp CHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCC-CSSSCCCCCCHHHHTTSCCTTHHHHHHHHTTSSTTSTTTCSTTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcc-hhhhhhchHHHHHHHHhcCCchhHHHHhhcccCCCchhhcCCCc
Confidence 56899999999999999999999999998622111 13344566789999999888899999999999999999999888
Q ss_pred ccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCCHHHHHHHHHHHHhhcCcccCCcCchHHHHHHHHHHHHHHHhh
Q psy13593 82 PGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDH 161 (264)
Q Consensus 82 ~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~~e~~~f~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 161 (264)
.+++.|++||.+|+.++|++|||||||+|+++++++++|++|||++..++.+.+++++|.++.++++..+..+..+++.+
T Consensus 127 ~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 206 (331)
T 3qye_A 127 AGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDY 206 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred CHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhcChHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHh
Q psy13593 162 YPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLK 241 (264)
Q Consensus 162 ~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~g~~~l~~~~lail~~~~~~ll~~~~~~~~~~~l~ 241 (264)
+|+|++||.+.|+++..|+.+||+|+|++.+|++.++|+||.++++|.++++++++|++..++++|++++|+++++++++
T Consensus 207 ~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~ 286 (331)
T 3qye_A 207 HRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIK 286 (331)
T ss_dssp CHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hccCCCCHHHHHHHHHHhhccCC
Q psy13593 242 TNITVMDKRTVDAIVKQVHRKEL 264 (264)
Q Consensus 242 ~~~~~~~~~~~~~li~~a~~l~~ 264 (264)
+.+++++..+++.++++|+++++
T Consensus 287 ~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 287 STLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HTTTCCCHHHHHHHHHHHHHCCC
T ss_pred hhCCCCCHHHHHHHHHHHHhCCc
Confidence 98999998999999999999875
No 2
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-55 Score=373.07 Aligned_cols=253 Identities=36% Similarity=0.675 Sum_probs=234.3
Q ss_pred ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhcchhHHHHHhhhcccCCCCCCCCCCCC
Q psy13593 2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLG 81 (264)
Q Consensus 2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~ 81 (264)
..++|++++++|||+.+|+.+|+.++|..+. ....+.|..+.++.++.+++|++|++||+|++++|..+.+
T Consensus 22 ~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~---------~~~~~~Y~~l~~~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~ 92 (310)
T 3hzj_A 22 RPKGLSTLVKSGVPEALRAEVWQLLAGCHDN---------QAMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGG 92 (310)
T ss_dssp CCTTHHHHHHHCCCGGGHHHHHHHHTTCCCC---------HHHHHHHHHHTTSCCTTHHHHHHHHTTSSTTSTTTSSTTS
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHCCCcc---------hhHHHHHHHHHhccCCcHHHHHHHHHhhCCCchhhcCCCc
Confidence 3588999999999999999999999997631 1234678888888888899999999999999999999888
Q ss_pred ccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCCHHHHHHHHHHHHhhcCcccCCcCchHHHHHHHHHHHHHHHhh
Q psy13593 82 PGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDH 161 (264)
Q Consensus 82 ~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~~e~~~f~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 161 (264)
.+++.|++||.+|+.++|++|||||||+||++++++++|++|||++.++|.++.++++|.++.+++...+..+..+++.+
T Consensus 93 ~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 172 (310)
T 3hzj_A 93 DGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQ 172 (310)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred CHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhcChHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHh
Q psy13593 162 YPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLK 241 (264)
Q Consensus 162 ~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~g~~~l~~~~lail~~~~~~ll~~~~~~~~~~~l~ 241 (264)
+|+|++||.+.|+++..|+.+||+|+|++.+|++.++|+||.++++|.++++++++|++...+++|+++ |+++++++++
T Consensus 173 ~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~-d~~~~l~~l~ 251 (310)
T 3hzj_A 173 LPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFR 251 (310)
T ss_dssp CHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC-CHHHHHHHHH
T ss_pred ChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 8999999998
Q ss_pred hccCC--CCHHHHHHHHHHhhccCC
Q psy13593 242 TNITV--MDKRTVDAIVKQVHRKEL 264 (264)
Q Consensus 242 ~~~~~--~~~~~~~~li~~a~~l~~ 264 (264)
+.+|. ....+++.+++.|+++++
T Consensus 252 ~~lp~~~~~~~d~~~ll~~A~~l~~ 276 (310)
T 3hzj_A 252 VQLPKRYRAEENARRLMEQACNIKV 276 (310)
T ss_dssp THHHHTTCSHHHHHHHHHHHHHSCC
T ss_pred HhCcccccccccHHHHHHHHHhcCC
Confidence 66553 245679999999999864
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-53 Score=364.89 Aligned_cols=248 Identities=25% Similarity=0.473 Sum_probs=222.7
Q ss_pred ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhc--------------------------
Q psy13593 2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQL-------------------------- 55 (264)
Q Consensus 2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~-------------------------- 55 (264)
+.+++|+++++|||+.+|+.||+.++|... ....+.|+.+.+..
T Consensus 37 ~~~~lr~l~~~GIP~~lR~~vW~~llg~~~----------~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 106 (334)
T 2qq8_A 37 CSRKVRDLWWQGIPPSVRGKVWSLAIGNEL----------NITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADR 106 (334)
T ss_dssp CCHHHHHHHHTCCCHHHHHHHHHHHHCCTT----------CCCHHHHHHHHHHHHHHC----------------------
T ss_pred ChHHHHHHHHCCCCHHHHHHHHHHHhCCcc----------ccCHHHHHHHHHHHHHHHHHhccccccCcccccccccccc
Confidence 568999999999999999999999999742 12344565544321
Q ss_pred chhHHHHHhhhcccCCCCCCCCCCCCccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCCHHHHHHHHHHHHhhcC
Q psy13593 56 TSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRG 135 (264)
Q Consensus 56 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~~e~~~f~~l~~l~~~~~ 135 (264)
.+..++|++||+||+|++++|+. .+++++.|++||.+|+.++|++|||||||+||++++++++|++|||+|.++|.+..
T Consensus 107 ~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~ 185 (334)
T 2qq8_A 107 EASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPC 185 (334)
T ss_dssp CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHH
T ss_pred hhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Confidence 23457999999999999999987 36789999999999999999999999999999999999999999999999998764
Q ss_pred cccCCcCchHHHHHHHHHHHHHHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhcChHHHHHH
Q psy13593 136 LRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRV 215 (264)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~g~~~l~~~ 215 (264)
+.++|..+.+++...+..+..+++..+|+|++||.+.|+++..|+.+||+|+|++++|++.++|+||+++++|..+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~v 265 (334)
T 2qq8_A 186 QMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRT 265 (334)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcHHHHhCCCCHHHHHHHHhhccCCCCHHHHHHHHHHhhccCC
Q psy13593 216 MLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL 264 (264)
Q Consensus 216 ~lail~~~~~~ll~~~~~~~~~~~l~~~~~~~~~~~~~~li~~a~~l~~ 264 (264)
++|++...+++|+++ |+++++.++++....++ ++.+++.|.++++
T Consensus 266 alaiL~~~~~~Ll~~-d~~~il~~L~~lp~~~d---~~~l~~~a~~l~~ 310 (334)
T 2qq8_A 266 ALGILKLFEDILTKM-DFIHMAQFLTRLPEDLP---AEELFASIATIQM 310 (334)
T ss_dssp HHHHHHHTHHHHHTC-CHHHHHHHHHSCCTTCC---HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHhCCCcCC---HHHHHHHHHHccC
Confidence 999999999999997 89999999997666678 8899999998864
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=3.3e-52 Score=360.56 Aligned_cols=257 Identities=18% Similarity=0.311 Sum_probs=224.3
Q ss_pred ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhc---------chhHHHHHhhhcccCCC
Q psy13593 2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQL---------TSHQHAILLDLGRTFPS 72 (264)
Q Consensus 2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~---------~~~~~~I~~Dv~Rt~~~ 72 (264)
|.++||+++++|||+.+|+.+|+.++|..+.............+..|+++.++. .+..++|++||+||+|+
T Consensus 39 d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~ 118 (345)
T 2qfz_A 39 DLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPE 118 (345)
T ss_dssp CHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSCH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCCc
Confidence 678999999999999999999999999864221111111223457888888763 23568999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcC-------------------------CHHHHHHHH
Q psy13593 73 HPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHH-------------------------SEEQAFMML 127 (264)
Q Consensus 73 ~~~f~~~~~~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~-------------------------~e~~~f~~l 127 (264)
++|+.+ .+++.|+|||.+|+.++|++|||||||+|++++++++ +|++|||||
T Consensus 119 -~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f 195 (345)
T 2qfz_A 119 -ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCM 195 (345)
T ss_dssp -HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHH
T ss_pred -cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHH
Confidence 999886 6888999999999999999999999999999998653 289999999
Q ss_pred HHHHhhcCcccCCcCchHHHHHHHHHHHHHHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhc
Q psy13593 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVE 207 (264)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~ 207 (264)
..+|.. .+++|..+.++++..+..+..+++.++|+|++||.+.|+++..|+++||+++|++++|++.++|+||.++++
T Consensus 196 ~~lm~~--~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~ 273 (345)
T 2qfz_A 196 SKLLDG--IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSE 273 (345)
T ss_dssp HHHHHT--SGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTS
T ss_pred HHHHHc--cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhC
Confidence 999988 478899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChH---HHHHHHHHHHHHcHHHHhCCCCHHHHHHHHhhccCC-CCHHHHHHHHHHhhccC
Q psy13593 208 NPE---IVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV-MDKRTVDAIVKQVHRKE 263 (264)
Q Consensus 208 g~~---~l~~~~lail~~~~~~ll~~~~~~~~~~~l~~~~~~-~~~~~~~~li~~a~~l~ 263 (264)
|.. +++++++|++...+++|+++.|+++++.++++..+. .+..+++.++++|+.++
T Consensus 274 g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~ 333 (345)
T 2qfz_A 274 PDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLK 333 (345)
T ss_dssp TTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHH
Confidence 986 789999999999999999878999999999975443 45667999999999864
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=3.6e-51 Score=358.78 Aligned_cols=255 Identities=22% Similarity=0.353 Sum_probs=223.7
Q ss_pred ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhc--------chhHHHHHhhhcccCCCC
Q psy13593 2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQL--------TSHQHAILLDLGRTFPSH 73 (264)
Q Consensus 2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~--------~~~~~~I~~Dv~Rt~~~~ 73 (264)
+.++||+++++|||+.+|+.+|+.++|..+.............+..|+++.++. .+..++|++||+||+|++
T Consensus 22 d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~~ 101 (396)
T 1fkm_A 22 NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHI 101 (396)
T ss_dssp CHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCCc
Confidence 678999999999999999999999999874221111111223457899988752 234579999999999999
Q ss_pred CCCCCCCCccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhc----------------------CC-------HHHHH
Q psy13593 74 PYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLH----------------------HS-------EEQAF 124 (264)
Q Consensus 74 ~~f~~~~~~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~----------------------~~-------e~~~f 124 (264)
++|+.+ .+++.|+|||.+|+.++|++|||||||+|+++|+++ ++ |++||
T Consensus 102 ~~F~~~--~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF 179 (396)
T 1fkm_A 102 PLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTF 179 (396)
T ss_dssp GGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHH
T ss_pred ccccCc--hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHH
Confidence 999986 899999999999999999999999999999999874 23 89999
Q ss_pred HHHHHHHhhcCcccCCcCchHHHHHHHHHHHHHHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHH
Q psy13593 125 MMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMV 204 (264)
Q Consensus 125 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~ 204 (264)
|||..+|.. ++++|..+.+++...+..+..+++.++|+|++||.+.|+++..|+++||.++|++++|++.++||||.+
T Consensus 180 ~~f~~lm~~--~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~ 257 (396)
T 1fkm_A 180 WCLTKLLEQ--ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTY 257 (396)
T ss_dssp HHHHHHHGG--GGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 999999987 588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC---------------------------------------------------------------hHHHHHHHHHHHH
Q psy13593 205 LVEN---------------------------------------------------------------PEIVFRVMLSLLG 221 (264)
Q Consensus 205 l~~g---------------------------------------------------------------~~~l~~~~lail~ 221 (264)
+++| ..+++++|+|+|.
T Consensus 258 l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~ 337 (396)
T 1fkm_A 258 LSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLI 337 (396)
T ss_dssp HHHHC------------------------------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHH
Confidence 9988 3689999999999
Q ss_pred HcHHHHhCCCCHHHHHHHHhhccCC--CCHHHHHHHHHHhhcc
Q psy13593 222 QHRENLLRCENFETIMDYLKTNITV--MDKRTVDAIVKQVHRK 262 (264)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~l~~~~~~--~~~~~~~~li~~a~~l 262 (264)
..+++|+++ |+++++++|++ ++. .++.+++.++++|+.+
T Consensus 338 ~~r~~Ll~~-df~~~l~~L~~-~p~~~~~~~di~~ll~~A~~l 378 (396)
T 1fkm_A 338 KWSDQLMEM-DFQETITFLQN-PPTKDWTETDIEMLLSEAFIW 378 (396)
T ss_dssp HTHHHHTTC-CHHHHHHHHTS-CSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CHHHHHHHHhc-CCCCCcccccHHHHHHHHHHH
Confidence 999999996 89999999997 444 3467799999999865
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=9.3e-50 Score=337.43 Aligned_cols=246 Identities=19% Similarity=0.301 Sum_probs=213.6
Q ss_pred ChhHHHHHHhcC---CCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhcchhHHHHHhhhcccCCCCCCCCC
Q psy13593 2 SHHHKHLTLVQG---VPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSS 78 (264)
Q Consensus 2 ~~~~l~~~~~~G---Ip~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~ 78 (264)
|.++||++++.| +|+.+|+.||+.++|+.+..... .|........+..++|++||+||+++++.|..
T Consensus 33 dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~----------~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~~~~ 102 (292)
T 4hl4_A 33 DVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP----------ISGKNLRQMSKDYQQVLLDVRRSLRRFPPGMP 102 (292)
T ss_dssp CHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS----------CCCTTHHHHCTTHHHHHHHHHTTGGGSCTTSC
T ss_pred cHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC----------chhhhhcccchhHHHHHHhhhhhhhhccCCCC
Confidence 678999999843 89999999999999988532111 12222244567789999999999999988764
Q ss_pred C--CCccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCCHHHHHHHHHHHHhhcCcccCCcCchHHHHHHHHHHHH
Q psy13593 79 P--LGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSR 156 (264)
Q Consensus 79 ~--~~~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~~e~~~f~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (264)
. .+.+++.|.+||.+|+.++|++|||||||+||++++++++|++|||++..++... ++++|.++..+++..+..+..
T Consensus 103 ~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~-l~~~~~~~~~~~~~~~~~l~~ 181 (292)
T 4hl4_A 103 EEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHH-LRDFMDPTMDNTKHILNYLMP 181 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTT-TTGGGCSSSCTTTGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHH
Confidence 2 2457889999999999999999999999999999999999999999999999874 788999998888888999999
Q ss_pred HHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCC-HHHHHHHHHHHhhcChHHHHHHHHHHHHHcHHHHhCCC-CHH
Q psy13593 157 LLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFP-LGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCE-NFE 234 (264)
Q Consensus 157 ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~-~~~~~rlwD~~l~~g~~~l~~~~lail~~~~~~ll~~~-~~~ 234 (264)
+++..+|+|++||.+.|++ ..|+.+||+|+|++++| ++.++|+||.++++|..+++++++|++...+++|++++ +.+
T Consensus 182 ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d~~ 260 (292)
T 4hl4_A 182 IIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMA 260 (292)
T ss_dssp HHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTSCCSTT
T ss_pred HHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999995 69999999999999996 99999999999999999999999999999999999975 677
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHhhcc
Q psy13593 235 TIMDYLKTNITVMDKRTVDAIVKQVHRK 262 (264)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~li~~a~~l 262 (264)
.++.++++....++ ++.++++|.++
T Consensus 261 ~l~~~l~~lp~~~d---~~~li~~A~~l 285 (292)
T 4hl4_A 261 SVHHLLSQIPQDLP---YETLISRAGDL 285 (292)
T ss_dssp HHHHHHHSCCSSCC---HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCC---HHHHHHHHHHH
Confidence 88888886555788 89999999875
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=277.79 Aligned_cols=233 Identities=18% Similarity=0.217 Sum_probs=186.4
Q ss_pred CChhHHHHHHhcC-CCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhcchhHHHHHhhhcccCCCCCCCCCC
Q psy13593 1 MSHHHKHLTLVQG-VPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSP 79 (264)
Q Consensus 1 ~~~~~l~~~~~~G-Ip~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~ 79 (264)
.|.++||+.|++| ||+.+|+.||+.|+|+.+.+.+......+..++.|+++.++. .+..++++..
T Consensus 38 ~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~-----~~~r~I~~~t--------- 103 (294)
T 3qwl_A 38 LDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHAL-----KVVRFVSDAT--------- 103 (294)
T ss_dssp CCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHH-----HHTTSCCTTS---------
T ss_pred CCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhh-----hhhhhhhccC---------
Confidence 4789999999999 999999999999999987544443344555667788877761 1222222211
Q ss_pred CCccHHHHHHHHHHHHhh----------CCCCCcccchhHHHHHHhh-cCCHHHHHHHHHHHHhhcCcccCCcCchHHHH
Q psy13593 80 LGPGQLSLFNVLKAYSLL----------DPEVGYCQGLSFVAGVLLL-HHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQ 148 (264)
Q Consensus 80 ~~~~~~~L~~iL~~~~~~----------~~~i~Y~qg~~~i~~~ll~-~~~e~~~f~~l~~l~~~~~~~~~~~~~~~~~~ 148 (264)
+ .....+..|... +++ .++|||..|+++++. +.+|++|||||.++|++ ++++|.++.++++
T Consensus 104 --P---~~~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~--l~~~f~~~~~gl~ 175 (294)
T 3qwl_A 104 --P---QAEVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ--LNTKYRDSLPQLP 175 (294)
T ss_dssp --C---HHHHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH--HHTTTTTTGGGHH
T ss_pred --c---hHHHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH--HHHhhCCChhHHH
Confidence 1 111223333221 122 245899999998874 56899999999999998 5789999998887
Q ss_pred HHHHHHHHHHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhcChHHHHHHHHHHHHHcHHHHh
Q psy13593 149 VQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLL 228 (264)
Q Consensus 149 ~~~~~~~~ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~g~~~l~~~~lail~~~~~~ll 228 (264)
.. +.++++..+|+|++||.+.|+.+..++.+||+++|++++|++.++|+||.++++|.++++++|+|+++.++++|+
T Consensus 176 ~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll 252 (294)
T 3qwl_A 176 KA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVM 252 (294)
T ss_dssp HH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh
Confidence 65 489999999999999999999877777799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHhhcc
Q psy13593 229 RCENFETIMDYLKTNITVMDKRTVDAIVKQVHRK 262 (264)
Q Consensus 229 ~~~~~~~~~~~l~~~~~~~~~~~~~~li~~a~~l 262 (264)
++++.++++++++ .+|..+ ++.++++|+++
T Consensus 253 ~~~~~~~il~~Lq-~lp~~d---i~~ll~~A~~l 282 (294)
T 3qwl_A 253 ALNSAEKITKFLE-NIPQDS---SDAIVSKAIDL 282 (294)
T ss_dssp HCCSHHHHHHHHT-TCCSTT---HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCccc---HHHHHHHHHHH
Confidence 9977799999999 466666 89999999875
No 8
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=47.86 E-value=19 Score=23.13 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=19.9
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhhh
Q psy13593 6 KHLTLVQGVPRSKRGEVWLFLAQQY 30 (264)
Q Consensus 6 l~~~~~~GIp~~~R~~vW~~ll~~~ 30 (264)
+..+....||..+|..+|+-+....
T Consensus 41 ledL~~mkIpe~~R~kIWk~l~e~~ 65 (80)
T 1dxs_A 41 IEDLGALKIPEQYRMTIWRGLQDLK 65 (80)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHC-
T ss_pred HHHHHhCCCCHHHHHHHHhhHHHhc
Confidence 3455667899999999999998865
No 9
>1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens}
Probab=25.87 E-value=40 Score=16.23 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=12.8
Q ss_pred hhHHHHHHhcCCCCch
Q psy13593 3 HHHKHLTLVQGVPRSK 18 (264)
Q Consensus 3 ~~~l~~~~~~GIp~~~ 18 (264)
|++|..++|.|-|..+
T Consensus 10 hkqLSeLLR~g~~~~l 25 (26)
T 1rdt_E 10 HKQLSELLRGGSGSXX 25 (26)
T ss_pred HHHHHHHHcCCCCcCC
Confidence 6788999999987653
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.53 E-value=1.1e+02 Score=18.75 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.3
Q ss_pred CCHHHHHHHHhhccCCCCHHHHHHHHH
Q psy13593 231 ENFETIMDYLKTNITVMDKRTVDAIVK 257 (264)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~~~li~ 257 (264)
.+.++.++.|+..+|+++.+.+...+.
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~ 42 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLR 42 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 367888889999999999777666654
No 11
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.69 E-value=1.2e+02 Score=17.84 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.7
Q ss_pred CHHHHHHHHhhccCCCCHHHHHHHHH
Q psy13593 232 NFETIMDYLKTNITVMDKRTVDAIVK 257 (264)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~li~ 257 (264)
...+.++.|...+|++|.+-++.++.
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~ 36 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCI 36 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 46788889999999999666555543
Done!