RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13593
(264 letters)
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 298 bits (765), Expect = e-101
Identities = 147/253 (58%), Positives = 195/253 (77%), Gaps = 1/253 (0%)
Query: 12 QGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFP 71
QGVPR RGE+W FLA+Q+ ++ SK +V Y++LLKQLTS QHAIL+DLGRTFP
Sbjct: 58 QGVPRHHRGEIWKFLAEQFHLKH-QFPSKQQPKDVPYKELLKQLTSQQHAILIDLGRTFP 116
Query: 72 SHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLM 131
+HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH SEE+AF ML+ LM
Sbjct: 117 THPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLM 176
Query: 132 FRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQ 191
F GLR+ Y PDM LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LYAAPW LT+F+SQ
Sbjct: 177 FDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQ 236
Query: 192 FPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRT 251
FPLGFV RVFDM+ ++ E++F+V LSLLG H+ +L+ EN ETI+D++K+ + +
Sbjct: 237 FPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQ 296
Query: 252 VDAIVKQVHRKEL 264
++ + QV ++
Sbjct: 297 MEKTINQVFEMDI 309
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 284 bits (728), Expect = 2e-96
Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 12/255 (4%)
Query: 12 QGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFP 71
GVP + R EVW LA + Q +D Y L+ + ++ + I D+ RTFP
Sbjct: 32 SGVPEALRAEVWQLLAGCHDNQAMLDR---------YRILITKDSAQESVITRDIHRTFP 82
Query: 72 SHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLM 131
+H Y+ G GQ SL+ + KAYS+ D ++GYCQG SF+A VLLLH EEQAF +L +M
Sbjct: 83 AHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIM 142
Query: 132 FRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQ 191
+ GLR Y + L + YQ RL+ + PDLH+HF + +YA+ W LTLF+++
Sbjct: 143 YDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAK 202
Query: 192 FPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNI--TVMDK 249
FPL V + D++L E I+F V L+LL +E+LL+ + FE + + + + +
Sbjct: 203 FPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQAD-FEGALKFFRVQLPKRYRAE 261
Query: 250 RTVDAIVKQVHRKEL 264
+++Q ++
Sbjct: 262 ENARRLMEQACNIKV 276
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 257 bits (657), Expect = 3e-85
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 18/247 (7%)
Query: 12 QGVPRSKRGEVWLFLAQQYCKQNP----------------MDTSKFPNYNVSYEQLLKQL 55
QG+P S RG+VW + T N
Sbjct: 47 QGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADR 106
Query: 56 TSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLL 115
+ I LD+ RTFP+ + GP L ++L AY+ P+VGY QG+SF+A VL+
Sbjct: 107 EASLELIKLDISRTFPNLCIFQQG-GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLI 165
Query: 116 LHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVH 175
L+ AF+ +L+ + + D + F ++ P L AHF + +
Sbjct: 166 LNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLT 225
Query: 176 PTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFET 235
P +Y W+ TL+S PL R++D+ + E +FR L +L + L + +F
Sbjct: 226 PDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKM-DFIH 284
Query: 236 IMDYLKT 242
+ +L
Sbjct: 285 MAQFLTR 291
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 147 bits (373), Expect = 3e-42
Identities = 52/267 (19%), Positives = 86/267 (32%), Gaps = 42/267 (15%)
Query: 13 GVPRSKRGEVWLFLAQQY----CKQNPMDTSKFPNYN----VSYEQLLKQLTSHQHAILL 64
G+P+ R VW L +Q K Y ++ + H I +
Sbjct: 33 GIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEI 92
Query: 65 DLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLH------- 117
D+ RT P P Y Q SL +L +++ P GY QG++ +
Sbjct: 93 DIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLP 150
Query: 118 ----------------------HSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFS 155
E F L L+ + Y+ + Q+ S
Sbjct: 151 PSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLL--EQITDNYIHGQPGILRQVKNLS 208
Query: 156 RLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVE-NPEIVFR 214
+L+ DL+ HF V +A W+ L +F +G V R++D L E + E+
Sbjct: 209 QLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSS 268
Query: 215 VMLSLLGQHRENLLRCENFETIMDYLK 241
+S + + K
Sbjct: 269 YSMSSNDIKPPVTPTEPRVASFVTPTK 295
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 143 bits (362), Expect = 4e-41
Identities = 46/267 (17%), Positives = 88/267 (32%), Gaps = 42/267 (15%)
Query: 12 QGVPRSKRGEVWLFLAQQY----CKQNPMDTSKFPNYNVSYEQLLKQLTSHQHA-----I 62
G+P+ R W L+ ++ K Y E H I
Sbjct: 49 SGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQI 108
Query: 63 LLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLL------- 115
+D+ R P +L +++ P GY QG++ +
Sbjct: 109 HIDIPRMSPEALILQPK---VTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEY 165
Query: 116 ------------------LHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRL 157
L + E + + L+ G++ Y +Q+++ L
Sbjct: 166 IEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLL--DGIQDNYTFAQPGIQMKVKMLEEL 223
Query: 158 LLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVE---NPEIVFR 214
+ +H H D HEV +A W+ L + PL R++D E
Sbjct: 224 VSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLY 283
Query: 215 VMLSLLGQHRENLLRCENFETIMDYLK 241
V + L + R+ +L ++F+ ++ +L+
Sbjct: 284 VCAAFLVRWRKEILEEKDFQELLLFLQ 310
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 133 bits (335), Expect = 1e-37
Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 18/253 (7%)
Query: 6 KHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLD 65
+ +P R VW L P + ++ + +
Sbjct: 44 CTFSQRFPLPSMYRALVWKVLLGIL----PPHHESHAKVMMYRKEQYLDVLHALKVVRFV 99
Query: 66 LGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFM 125
T + Y L + S P + +A + E+
Sbjct: 100 SDATPQAEVYLRMYQ------LESGKLPRSPSFPLEPDDEVFLAIA-KAMEEMVEDSVDC 152
Query: 126 MLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLL 185
F L Y + L F + L L H P L W
Sbjct: 153 YWITRRFVNQLNTKYRDSLPQLP---KAFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFK 209
Query: 186 TLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNIT 245
F+ P + RV+D V+ + +I+ V + +L + ++ + E I +L+
Sbjct: 210 RCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFLEN--- 266
Query: 246 VMDKRTVDAIVKQ 258
+ + + DAIV +
Sbjct: 267 -IPQDSSDAIVSK 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 1e-07
Identities = 49/347 (14%), Positives = 97/347 (27%), Gaps = 121/347 (34%)
Query: 11 VQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVS----YEQL---LKQLTSHQHAIL 63
++ R +++ Q+ N D F YNVS Y +L L +L ++ ++
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 64 ------------------LDLGRTFPSHPYYSSPLG----PGQLSLFNVLKAYSLLDPEV 101
+ ++ + L P + L + K +DP
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETV-LEMLQKLLYQIDPN- 212
Query: 102 GYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDH 161
+ + + L HS + LR L+ + Y+ L+L +
Sbjct: 213 -WTSRSDHSSNIKLRIHSIQAE---LRRLLKSK----------------PYENCLLVLLN 252
Query: 162 --YPDLHAHFD--------------------THEVHPTLYAAPWLLTLFSSQFPLGFVTR 199
F+ H +L LT + +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV---KSLLLK 309
Query: 200 VFDMVLVENPEIVFRVM---LSLLGQH-RENLLR--------CENFETIMD--------- 238
D + P V LS++ + R+ L C+ TI++
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 239 -----YLK-------TNITV---------MDKRTVDAIVKQVHRKEL 264
+ + +I + K V +V ++H+ L
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Score = 34.4 bits (78), Expect = 0.042
Identities = 46/302 (15%), Positives = 91/302 (30%), Gaps = 98/302 (32%)
Query: 26 LAQQYCKQNPM-----------DTSKFPNY-NVSYEQL-------LKQLTSHQH-AILLD 65
L ++ NP + + N+ +V+ ++L L L ++ +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 66 LGRTFPSHPYYSSPLGPGQLSLF-------------NVLKAYSLL--DPEVGYCQ--GLS 108
L FP S+ + LSL N L YSL+ P+ +
Sbjct: 378 LS-VFP----PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 109 FVAGVLLLHHSEEQAFM---MLRHLMFRRGLRQTYLPD---------------MAALQVQ 150
L E + + ++ H + L +
Sbjct: 433 L----ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 151 LYQ-FSRLLLDHYPDLHAHFD------THEVHPTLYAAPWLLTLFSSQFPLGFVTR---V 200
F + LD F H+ + L TL +F ++
Sbjct: 489 RMTLFRMVFLD--------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 201 FDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVH 260
++ ++ +L L + ENL+ + D L+ I +M + +AI ++ H
Sbjct: 541 YERLV--------NAILDFLPKIEENLICSKY----TDLLR--IALMAED--EAIFEEAH 584
Query: 261 RK 262
++
Sbjct: 585 KQ 586
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 59/172 (34%)
Query: 6 KHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLD 65
+LT+ G + KR + + Y + M + + E++ K++ H +
Sbjct: 1670 VNLTIHFGGEKGKR------IRENY---SAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 66 -----LGRTFPSHPYYSSP-LGPGQLSLFNVLKAYSLLDPE-------VG-Y----CQG- 106
L T ++ P L + + F LK+ L+ + +G Y
Sbjct: 1721 SEKGLLSAT-----QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 107 -LSFVAGVLLLHHSEEQAFMMLRHLMFRRG-LRQTYLP---------DMAAL 147
+S + V ++ + RG Q +P M A+
Sbjct: 1776 VMSIESLVEVVFY---------------RGMTMQVAVPRDELGRSNYGMIAI 1812
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.077
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 120 EEQAFMMLRHLMFRRGLRQTYLPDMA-ALQVQ 150
E+QA L+ L + L+ Y D A AL ++
Sbjct: 18 EKQA---LKKL--QASLK-LYADDSAPALAIK 43
>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate,
amino-acid biosynthesis, aromatic amino acid
biosynthesis, lyase; HET: DHS; 2.20A {Clostridium
difficile}
Length = 258
Score = 28.1 bits (62), Expect = 2.7
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 66 LGRTFPS---HPYYSSPLGPGQLSLFNVLKAYSLLD 98
G F S S PGQ+S + +LL
Sbjct: 219 CGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLH 254
>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis,
aromatic amino acid biosynthe schiff base, lyase; 1.60A
{Streptococcus mutans}
Length = 259
Score = 27.7 bits (61), Expect = 3.2
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 66 LGRTFPS---HPYYSSPLGPGQLSLFNVLKAYSLLD 98
S PGQ+SL ++ K +LD
Sbjct: 222 AADLIGSSWTFASLEQESAPGQISLADMRKIKEVLD 257
>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A
{Archaeoglobus fulgidus}
Length = 196
Score = 27.5 bits (61), Expect = 3.6
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 28/113 (24%)
Query: 1 MSHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKF---PNYNVSYEQLLKQLTS 57
S+H+ P + L + D K E +++ LT+
Sbjct: 95 ESYHN-----FIRTPD------YSELKGIVEGRRG-DLVKIATMGKSKRDVETIVRILTN 142
Query: 58 HQHAILLDLGRTFP-------------SHPYYSSPLGPGQLSLFNVLKAYSLL 97
+ + +G F + Y SP PGQ+SL + + S L
Sbjct: 143 YDDVVAFLMGERFSFTRVLAAYLGSPFIYCYVGSPKAPGQISLDDAREIISRL 195
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis,
3-dehydroquinase, structural genomi NPPSFA; 2.00A
{Geobacillus kaustophilus}
Length = 257
Score = 27.7 bits (61), Expect = 3.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 66 LGRTFPS---HPYYSSPLGPGQLSLFNVLKAYSLL 97
G F S + PGQ+ + +V S+L
Sbjct: 218 AGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSIL 252
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus
pyogenes, dehydroshikimate, PSI-2, protein ST
initiative; HET: MSE; 1.85A {Streptococcus pyogenes
serotype M1}
Length = 231
Score = 27.6 bits (61), Expect = 3.9
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 66 LGRTFPS---HPYYSSPLGPGQLSLFNVLKAYSLLD 98
G S + GPGQ++L ++ + +L+
Sbjct: 191 AGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLE 226
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
barrel, lyase; 1.03A {Salmonella enterica subsp} PDB:
3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A
1l9w_A* 1qfe_A*
Length = 276
Score = 27.7 bits (61), Expect = 4.2
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 66 LGRTFPS---HPYYSSPLGPGQLSLFNVLKAYSLL 97
G F S PG +S+ ++ ++L
Sbjct: 239 AGEVFGSAATFGAVKKASAPGAISVADLRTVLTIL 273
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural
genomics, protein structure initiative; HET: MSE; 1.65A
{Escherichia coli O6}
Length = 171
Score = 26.8 bits (59), Expect = 5.0
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 125 MMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTH 172
M R + LR + + A + SR+ D+YP+L A + H
Sbjct: 3 AMNRIEHYHDWLRDAHAMEKQAESMLESMASRI--DNYPELRARIEQH 48
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A
{Ambystoma tigrinum}
Length = 392
Score = 27.4 bits (60), Expect = 5.7
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 19 RGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPS 72
R +++ Q Y + + E+L+K+L +H + +G P
Sbjct: 75 RKDLYSLATQVYPPETKEPLTPLQ------EKLMKKLGAHAYPFCFKMGTNLPC 122
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; HET: TLA; 1.75A {Aquifex
aeolicus} PDB: 2ysw_A
Length = 219
Score = 26.8 bits (59), Expect = 7.1
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 66 LGRTFPS---HPYYSSPLGPGQLSLFNVLKAYSLL 97
G F S + PGQ+ L +++
Sbjct: 182 AGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKF 216
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 26.8 bits (59), Expect = 9.4
Identities = 31/149 (20%), Positives = 47/149 (31%), Gaps = 26/149 (17%)
Query: 82 PGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLL--LHHSEEQAFMMLR---HLMFRRGL 136
L++FN + L D + V+ H+ + R L + GL
Sbjct: 261 NKGLNIFNT--KFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGL 318
Query: 137 R----QTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQF 192
Q + D A+ V+ + RLL H A H V P Y
Sbjct: 319 TVFRDQEFSGDRASRAVRRIENIRLLRQHQFPEDAGPTAHPVRPASYEEMNNF------- 371
Query: 193 PLGFVTRVFDMVLVENPEIVFRVMLSLLG 221
+ M + E V R+ +LLG
Sbjct: 372 --------YTMTVYEKGAEVVRMYHTLLG 392
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.427
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,185,332
Number of extensions: 246166
Number of successful extensions: 730
Number of sequences better than 10.0: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 33
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.5 bits)