RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13593
(264 letters)
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 80.7 bits (198), Expect = 4e-19
Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 15/168 (8%)
Query: 12 QGVPRSKRGEVWLFLA----------QQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHA 61
G+P+ R VW L + + ++ + + S + T HQ
Sbjct: 31 NGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQ-- 88
Query: 62 ILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEE 121
I +D+ RT P P Y Q SL +L +++ P GY QG++ + E
Sbjct: 89 IEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 146
Query: 122 QAFMMLRHLMFRRGLRQTYLP-DMAALQVQLYQFSRLLLDHYPDLHAH 168
+ + + + L+ + LL+ D + H
Sbjct: 147 YLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH 194
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 69.1 bits (168), Expect = 5e-15
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 1/117 (0%)
Query: 147 LQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLV 206
+ Q+ S+L+ DL+ HF V +A W+ L +F +G V R++D L
Sbjct: 5 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 64
Query: 207 ENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKE 263
E + V + + T + + ++
Sbjct: 65 ETSQEVTSSYSMSSNDIKPPVT-PTEPRVASFVTPTKDFQSPTTALSNMTPNNAVED 120
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 32.1 bits (72), Expect = 0.061
Identities = 35/252 (13%), Positives = 71/252 (28%), Gaps = 43/252 (17%)
Query: 24 LFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLGPG 83
L ++NP + ++ + S I+ + YY P
Sbjct: 200 TSLITTLAQKNPEE----------FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 249
Query: 84 QLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPD 143
+ L +L+ Y + + + + +
Sbjct: 250 SVKLLRLLQCYPPPEDP---------------AVRGRLTECLETILNKAQEPPKSKKVQH 294
Query: 144 MAALQVQLYQFSRLLLDHYPD----------LHAHFDTHEVHPTLYAAPWLLTLFSSQFP 193
A L++ L++ H + L E + A + TL SS+F
Sbjct: 295 SNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS 354
Query: 194 LGFVTR----VFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDK 249
V V + + E V + + LL + N + I+ + + + D
Sbjct: 355 HEAVKTHIETVINALKTERDVSVRQRAVDLLY----AMCDRSNAQQIVAEMLSYLETADY 410
Query: 250 RTVDAIVKQVHR 261
+ IV +V
Sbjct: 411 SIREEIVLKVAI 422
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 26.8 bits (59), Expect = 1.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 119 SEEQAFM-MLRHLMFRRGLRQTYLPDMAALQVQLYQFSRL 157
++EQAF+ L M R +P + Q+ L+ +
Sbjct: 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQA 41
>d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE
{Escherichia coli [TaxId: 562]}
Length = 149
Score = 25.7 bits (56), Expect = 4.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 215 VMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
V + + HR + + IMDYLKT
Sbjct: 94 VFVGVTSAHRSSAFEA--GQFIMDYLKTRAPF 123
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated
protein 28, VPS28 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 94
Score = 24.7 bits (54), Expect = 5.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 231 ENFETIMDYLKTNITVMD 248
NF T+MD LK N D
Sbjct: 11 GNFITVMDALKLNYNAKD 28
>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1,
APAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 24.8 bits (54), Expect = 5.5
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 218 SLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKE 263
+ L QHRE L + IMD++ ++ + + + + +++
Sbjct: 7 NCLLQHREALEKDIKTSYIMDHMISD-GFLTISEEEKVRNEPTQQQ 51
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 25.4 bits (55), Expect = 6.5
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 18 KRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRT--FPSHPY 75
G+ + F+A +Y + + S P Y + A+ + G F
Sbjct: 115 NTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHGTRQ 174
Query: 76 YSSPLGPGQLSLFNVLKAYSLLD 98
Y P + + KA S +
Sbjct: 175 YK--FDPKTKRILTLQKANSWFN 195
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,
IlvH {Escherichia coli [TaxId: 562]}
Length = 76
Score = 23.8 bits (52), Expect = 7.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 204 VLVEN-PEIVFRVMLSLLGQHRENL--LRCENFETIMDYLKTNITVMDKRTVDAIVKQVH 260
VL+EN + RV+ L Q N+ L + T TV D++ ++ I KQ+H
Sbjct: 6 VLLENESGALSRVI-GLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLH 64
Query: 261 R 261
+
Sbjct: 65 K 65
>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase
{Salmonella typhi [TaxId: 90370]}
Length = 252
Score = 25.3 bits (55), Expect = 8.1
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 66 LGRTFPS---HPYYSSPLGPGQLSLFNVLKAYSLL 97
G F S PGQ+++ ++ +L
Sbjct: 215 AGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMIL 249
>d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17
[TaxId: 1409]}
Length = 386
Score = 25.0 bits (54), Expect = 9.8
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 22/114 (19%)
Query: 68 RTFPSHPYYS---SPLGPGQLSLFNVLKAY------SLLDPEVGYCQGLSFVAGVL---- 114
+ FP Y+ P Q SL +++Y L ++ G +V G +
Sbjct: 5 KPFPQQVNYAGVIKPNHVTQESLNASVRSYYDNWKKKYLKNDLSSLPGGYYVKGEITGDA 64
Query: 115 ----LLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPD 164
L SE Q + M+ ++ Y + + L++ +R
Sbjct: 65 DGFKPLGTSEGQGYGMIITVLM-----AGYDSNAQKIYDGLFKTARTFKSSQNP 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.139 0.427
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 990,902
Number of extensions: 44138
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 17
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.4 bits)