BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13594
(574 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 14/155 (9%)
Query: 21 KQLNDIISTVRPQAKPLPGYDGGDCRHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGIT 80
+ LND++S DG C C+EV P I++ + A++ L+++GIT
Sbjct: 9 QDLNDLLS------------DGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGIT 56
Query: 81 HVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELLDLPIANISCHFRDVADFIEDAL--EN 138
HV+NAA+G+ F VNT +++YKD GI +LG++ D N+S +F ADFI+ AL +N
Sbjct: 57 HVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKN 116
Query: 139 NGTYVSDLKGVLKGLQLVANAGIKHQTLEIQQKWT 173
V +G + LV + Q ++++ +
Sbjct: 117 GRVLVHSREGYSRSPTLVIAYLMMRQKMDVKSALS 151
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 13/121 (10%)
Query: 21 KQLNDIISTVRPQAKPLPGYDGGDCRHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGIT 80
+ LND++S DG C C+EV P I++ + A++ L+++GIT
Sbjct: 9 QDLNDLLS------------DGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGIT 56
Query: 81 HVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELLDLPIANISCHFRDVADFIEDAL-ENN 139
HV+NAA+G+ F VNT +++YKD GI +LG++ D N+S +F ADFI+ AL + N
Sbjct: 57 HVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKN 116
Query: 140 G 140
G
Sbjct: 117 G 117
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 13/121 (10%)
Query: 21 KQLNDIISTVRPQAKPLPGYDGGDCRHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGIT 80
+ LND++S DG C C+EV P I++ + A++ L+++GIT
Sbjct: 8 QDLNDLLS------------DGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGIT 55
Query: 81 HVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELLDLPIANISCHFRDVADFIEDAL-ENN 139
HV+NAA+G+ F VNT +++YKD GI +LG++ D N+S +F ADFI+ AL + N
Sbjct: 56 HVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKN 115
Query: 140 G 140
G
Sbjct: 116 G 116
>pdb|4HRF|A Chain A, Atomic Structure Of Dusp26
pdb|4HRF|B Chain B, Atomic Structure Of Dusp26
pdb|4HRF|C Chain C, Atomic Structure Of Dusp26
pdb|4HRF|D Chain D, Atomic Structure Of Dusp26
Length = 160
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 51 LDCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLG 110
+ DEV+P ++L D A N+ L+R+GITHV+NA+ + G T + Y+ +GI++LG
Sbjct: 1 MHADEVWPGLYLGDQDMANNRRELRRLGITHVLNASHSRWRG----TPEAYEGLGIRYLG 56
Query: 111 LELLDLPIANISCHFRDVADFIEDALENNG 140
+E D P ++S HF+ ADFI AL G
Sbjct: 57 VEAHDSPAFDMSIHFQTAADFIHRALSQPG 86
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
DEV+P ++L D A N+ L+R+GITHV+NA+ + G T + Y+ +GI++LG+E
Sbjct: 3 DEVWPGLYLGDQDMANNRRELRRLGITHVLNASHSRWRG----TPEAYEGLGIRYLGVEA 58
Query: 114 LDLPIANISCHFRDVADFIEDALENNG 140
D P ++S HF+ ADFI AL G
Sbjct: 59 HDSPAFDMSIHFQTAADFIHRALSQPG 85
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
+EV+P +++ D TA ++ L++ G THV+NAA G+ V+T DYY+D+ I++ G+E
Sbjct: 55 NEVWPKLYIGDEATALDRYRLQKAGFTHVLNAAHGR--WNVDTGPDYYRDMDIQYHGVEA 112
Query: 114 LDLPIANISCHFRDVADFIEDALENNGT 141
DLP ++S F A FI+ AL ++ +
Sbjct: 113 DDLPTFDLSVFFYPAAAFIDRALSDDHS 140
>pdb|2PQ5|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|B Chain B, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|C Chain C, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|D Chain D, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
Length = 205
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
DEV+P++FL D A++K L ++GITHV+NAA GK V+T + +Y+ + +++ G+E
Sbjct: 47 DEVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKF--QVDTGAKFYRGMSLEYYGIEA 104
Query: 114 LDLPIANISCHFRDVADFIEDAL 136
D P ++S +F VA +I AL
Sbjct: 105 DDNPFFDLSVYFLPVARYIRAAL 127
>pdb|2GWO|A Chain A, Crystal Structure Of Tmdp
pdb|2GWO|B Chain B, Crystal Structure Of Tmdp
pdb|2GWO|C Chain C, Crystal Structure Of Tmdp
pdb|2GWO|D Chain D, Crystal Structure Of Tmdp
Length = 198
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
DEV+P++FL D A++K L ++GITHV+NAA GK V+T + +Y+ + +++ G+E
Sbjct: 47 DEVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKF--QVDTGAKFYRGMSLEYYGIEA 104
Query: 114 LDLPIANISCHFRDVADFIEDAL 136
D P ++S +F VA +I AL
Sbjct: 105 DDNPFFDLSVYFLPVARYIRAAL 127
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 56 VYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDY-YKDVGIKFLGLELL 114
+ P + L A + + LK+ +TH++N A G + + SD+ YK + I L
Sbjct: 7 IKPWLLLGSQDAAHDLDTLKKNKVTHILNVAYGVENAFL---SDFTYKSISI-------L 56
Query: 115 DLPIANISCHFRDVADFIEDALENNG 140
DLP NI +F + +FIE+A +G
Sbjct: 57 DLPETNILSYFPECFEFIEEAKRKDG 82
>pdb|2HXP|A Chain A, Crystal Structure Of The Human Phosphatase (Dusp9)
Length = 155
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELL 114
++ PN++L + N E L ++GI +++N +YK + I
Sbjct: 8 QILPNLYLGSARDSANLESLAKLGIRYILNVTPNLPNFFEKNGDFHYKQIPIS------- 60
Query: 115 DLPIANISCHFRDVADFIEDALENN-GTYVSDLKGV 149
D N+S F + +FI++AL N G V L GV
Sbjct: 61 DHWSQNLSRFFPEAIEFIDEALSQNCGVLVHSLAGV 96
>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
Length = 165
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
+++ P +++ + A++ E L + +TH+++ + M+ G+K+L +
Sbjct: 8 NKILPGLYIGNFKDARDAEQLSKNKVTHILSVHDSAR-PMLE---------GVKYLCIPA 57
Query: 114 LDLPIANISCHFRDVADFIEDA-LENNGTYVSDLKGVLKGLQLV 156
D P N++ HF++ FI + L V L GV + + LV
Sbjct: 58 ADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLV 101
>pdb|3LJ8|A Chain A, Crystal Structure Of Mkp-4
Length = 146
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELL 114
++ PN++L + N E L ++GI +++N +YK + I
Sbjct: 5 QILPNLYLGSARDSANLESLAKLGIRYILNVTPNLPNFFEKNGDFHYKQIPIS------- 57
Query: 115 DLPIANISCHFRDVADFIEDAL-ENNGTYVSDLKGV 149
D N+S F + +FI++AL +N G V L GV
Sbjct: 58 DHWSQNLSRFFPEAIEFIDEALSQNCGVLVHCLAGV 93
>pdb|2G6Z|A Chain A, Crystal Structure Of Human Dusp5
pdb|2G6Z|B Chain B, Crystal Structure Of Human Dusp5
pdb|2G6Z|C Chain C, Crystal Structure Of Human Dusp5
Length = 211
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELL 114
E+ P ++L A E+L + IT ++N ++ + T +YK + ++
Sbjct: 8 EILPFLYLGSAYHASKCEFLANLHITALLNVSR--RTSEACMTHLHYKWIPVE------- 58
Query: 115 DLPIANISCHFRDVADFIEDALENNG 140
D A+IS HF++ DFI+ E G
Sbjct: 59 DSHTADISSHFQEAIDFIDCVREKGG 84
>pdb|2RRF|A Chain A, The Solution Structure Of The C-Terminal Region Of Zinc
Finger Fyve Domain-Containing Protein 21
Length = 141
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 481 GADGDKDKEFMDQYIQVIKAGAD-----GDKDKVLTISRKMG------FLTGYESKIMEE 529
G+ G EF D+ ++V+ +GA G+ +K T++ ++ FL G +E
Sbjct: 1 GSSGSSGAEFYDKQLKVLLSGATFLVTFGNSEKPETMTCRLSNNQRYLFLDGDSHYEIEI 60
Query: 530 AHVNTVMILSEVFSEKIGEFDFGGQ--DTTKRITELVTNLK 568
H++TV IL+E F G G T TE VT LK
Sbjct: 61 VHISTVQILTEGFPPGGGNARATGMFLQYTVPGTEGVTQLK 101
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 428 LRELFQFRYMQTDPNWSNFFYNKDTKQLILLDFG 461
L+ + QF + D SNF YN+ K+ L+DFG
Sbjct: 130 LKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFG 163
>pdb|1YZ4|A Chain A, Crystal Structure Of Dusp15
pdb|1YZ4|B Chain B, Crystal Structure Of Dusp15
Length = 160
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELL 114
+V P ++L + AK+ + L R ITH+I+ + + +D I +L + +
Sbjct: 10 KVLPGLYLGNFIDAKDLDQLGRNKITHIISIHE--------SPQPLLQD--ITYLRIPVA 59
Query: 115 DLPIANISCHFRDVADFIEDALENNG-TYVSDLKGVLKGLQLVA 157
D P I HF++ +FI N G V G+ + +V
Sbjct: 60 DTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVT 103
>pdb|2WGP|A Chain A, Crystal Structure Of Human Dual Specificity Phosphatase 14
pdb|2WGP|B Chain B, Crystal Structure Of Human Dual Specificity Phosphatase 14
Length = 190
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELL 114
++ ++FL G A N+ L+ GIT ++NA + N + +++ + L
Sbjct: 28 QITSSLFLGRGSVASNRHLLQARGITCIVNAT----IEIPNFNWPQF-----EYVKVPLA 78
Query: 115 DLPIANISCHFRDVADFIEDALENNG-TYVSDLKGVLKGLQL 155
D+P A I +F VAD I +G T V GV + L
Sbjct: 79 DMPHAPIGLYFDTVADKIHSVSRKHGATLVHCAAGVSRSATL 120
>pdb|2ESB|A Chain A, Crystal Structure Of Human Dusp18
Length = 188
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELL 114
++ ++++S+G A NK L IT VIN + V + Y+D I+++ + +
Sbjct: 22 QITKSLYISNGVAANNKLMLSSNQITMVINVS-------VEVVNTLYED--IQYMQVPVA 72
Query: 115 DLPIANISCHFRDVADFIEDALENNG-TYVSDLKGVLKGLQLVANAGIKHQTLEI--QQK 171
D P + + F +AD I G T + GV + L +K+ + +
Sbjct: 73 DSPNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHT 132
Query: 172 WTNS 175
WT S
Sbjct: 133 WTKS 136
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 12 NEDILAGLEKQLNDIISTVRPQAKPLPGYDGGDCRHDMDLDCDEVYPNIFLSDGGTAKNK 71
+EDI +GL Q++D + D DC + + + DE+Y ++ S+ + K
Sbjct: 141 DEDIYSGLSDQIDDTVEE---------DEDLYDCVENEEAEGDEIYEDLMRSEPVSMPPK 191
Query: 72 --EYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELLDLPIANISCHFRDVA 129
EY KR I + K + + ++ +FL + +++ NI R
Sbjct: 192 MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQRFLKPQDIEIIFINIEDLLRVHT 251
Query: 130 DFIEDALENNGT 141
F+++ E GT
Sbjct: 252 HFLKEMKEALGT 263
>pdb|2YR4|A Chain A, Crystal Structure Of L-Phenylalanine Oxiase From
Psuedomonas Sp. P-501
pdb|2YR4|B Chain B, Crystal Structure Of L-Phenylalanine Oxiase From
Psuedomonas Sp. P-501
pdb|2YR5|A Chain A, Crystal Structure Of L-Phenylalanine Oxidase From
Psuedomonas Sp.P501
pdb|2YR5|B Chain B, Crystal Structure Of L-Phenylalanine Oxidase From
Psuedomonas Sp.P501
pdb|2YR6|A Chain A, Crystal Structure Of L-Phenylalanine Oxidase From
Psuedomonas Sp.P501
pdb|2YR6|B Chain B, Crystal Structure Of L-Phenylalanine Oxidase From
Psuedomonas Sp.P501
pdb|3AYI|A Chain A, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYI|B Chain B, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYJ|A Chain A, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYJ|B Chain B, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYL|A Chain A, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
pdb|3AYL|B Chain B, X-Ray Crystal Structures Of L-Phenylalanine Oxidase
(Deaminating And Decaboxylating) From Pseudomonas Sp.
P501. Structures Of The Enzyme- Ligand Complex And
Catalytic Mechanism
Length = 721
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTS 98
++VYP + LSD A N + IG H+ A K F V T +
Sbjct: 445 NQVYPPLLLSDSSPAANARIVTAIGQLHM--ARSSKVFATVKTAA 487
>pdb|3GRF|A Chain A, X-Ray Structure Of Ornithine Transcarbamoylase From
Giardia Lamblia
Length = 328
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 84 NAAKGKKFG-----MVNTTSDYYKDVGIKFLGLELLDLPIANISCH-------FRDVADF 131
N KG KF M N T D + G LG+E ++ C ++V D
Sbjct: 157 NGFKGIKFAYCGDSMNNVTYDLMR--GCALLGME------CHVCCPDHKDFKPIKEVIDE 208
Query: 132 IEDALENNGT-----YVSDLKGVLKGLQLVANAGIKHQTLEIQQKWTNSSFKSLAS-NLD 185
E+ + +GT D K +G+ +V + +QK + K L +D
Sbjct: 209 CEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQK--EARLKVLTPFQVD 266
Query: 186 QSLKSTSTTPCALLNANVLKEAAERSSVVLDGVKAFVFKEAGS 228
++ + ++ +N E+++ V+DG K+ + EAG+
Sbjct: 267 DAVMAVTSKRSIFMNCLPATRGEEQTASVIDGPKSVCYDEAGN 309
>pdb|1MKP|A Chain A, Crystal Structure Of Pyst1 (Mkp3)
Length = 144
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELL 114
E+ P ++L + N + L+ GI +++N N YK + I
Sbjct: 6 EILPFLYLGCAKDSTNLDVLEEFGIKYILNVTPNLPNLFENAGEFKYKQIPIS------- 58
Query: 115 DLPIANISCHFRDVADFIEDAL-ENNGTYVSDLKGV 149
D N+S F + FI++A +N G V L G+
Sbjct: 59 DHWSQNLSQFFPEAISFIDEARGKNCGVLVHSLAGI 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,972,953
Number of Sequences: 62578
Number of extensions: 669406
Number of successful extensions: 1667
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 30
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)