RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13594
(574 letters)
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 112 bits (282), Expect = 5e-29
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 12/123 (9%)
Query: 21 KQLNDIISTVRPQAKPLPGYDGGDCRHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGIT 80
+ LND++S DG C C+EV P I++ + A++ L+++GIT
Sbjct: 8 QDLNDLLS------------DGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGIT 55
Query: 81 HVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELLDLPIANISCHFRDVADFIEDALENNG 140
HV+NAA+G+ F VNT +++YKD GI +LG++ D N+S +F ADFI+ AL
Sbjct: 56 HVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKN 115
Query: 141 TYV 143
V
Sbjct: 116 GRV 118
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 105 bits (265), Expect = 6e-27
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 53 CDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLE 112
DEV+P ++L D A N+ L+R+GITHV+NA+ + T + Y+ +GI++LG+E
Sbjct: 2 ADEVWPGLYLGDQDMANNRRELRRLGITHVLNASHSR----WRGTPEAYEGLGIRYLGVE 57
Query: 113 LLDLPIANISCHFRDVADFIEDALENNGTYV 143
D P ++S HF+ ADFI AL G +
Sbjct: 58 AHDSPAFDMSIHFQTAADFIHRALSQPGGKI 88
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 106 bits (266), Expect = 1e-26
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 46 RHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVG 105
+ DEV+P++FL D A++K L ++GITHV+NAA GK V+T + +Y+ +
Sbjct: 39 QAATLNHIDEVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKF--QVDTGAKFYRGMS 96
Query: 106 IKFLGLELLDLPIANISCHFRDVADFIEDALENNGTYV 143
+++ G+E D P ++S +F VA +I AL V
Sbjct: 97 LEYYGIEADDNPFFDLSVYFLPVARYIRAALSVPQGRV 134
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 104 bits (262), Expect = 7e-26
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 53 CDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLE 112
+EV+P +++ D TA ++ L++ G THV+NAA G+ V+T DYY+D+ I++ G+E
Sbjct: 54 VNEVWPKLYIGDEATALDRYRLQKAGFTHVLNAAHGRW--NVDTGPDYYRDMDIQYHGVE 111
Query: 113 LLDLPIANISCHFRDVADFIEDALENNGTYV 143
DLP ++S F A FI+ AL ++ + +
Sbjct: 112 ADDLPTFDLSVFFYPAAAFIDRALSDDHSKI 142
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 96.1 bits (240), Expect = 1e-23
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 52 DCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGL 111
+ + P +FL + A++ + ++R+ I +VIN + +Y+ + L
Sbjct: 3 ELTPILPFLFLGNEQDAQDLDTMQRLNIGYVINVTT-------HLPLYHYEKGLFNYKRL 55
Query: 112 ELLDLPIANISCHFRDVADFIEDALENNG 140
D N+ +F + +FIE+A +
Sbjct: 56 PATDSNKQNLRQYFEEAFEFIEEAHQCGK 84
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 96.6 bits (241), Expect = 2e-23
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 52 DCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGL 111
+ + P +FL + A++ + ++R+ I +VIN + +Y+ + L
Sbjct: 7 ELTPILPFLFLGNEQDAQDLDTMQRLNIGYVINVTT-------HLPLYHYEKGLFNYKRL 59
Query: 112 ELLDLPIANISCHFRDVADFIEDALENNG 140
D N+ +F + +FIE+A +
Sbjct: 60 PATDSNKQNLRQYFEEAFEFIEEAHQCGK 88
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 95.8 bits (239), Expect = 2e-23
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 49 MDLDCDEVYPNIFLSDGGTAKNK--EYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGI 106
+ + E+ P +FL +A L++ GITH+I + +
Sbjct: 2 LRREMQEILPGLFLGPYSSAMKSKLPVLQKHGITHIICIRQNIE----ANFIKPNFQQLF 57
Query: 107 KFLGLELLDLPIANISCHFRDVADFIEDALENNG 140
++L L++ D P+ NI F +FI+ +L+ G
Sbjct: 58 RYLVLDIADNPVENIIRFFPMTKEFIDGSLQMGG 91
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Length = 155
Score = 95.3 bits (238), Expect = 2e-23
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
++ PN++L + N E L ++GI +++N N + + K+ + + +
Sbjct: 7 VQILPNLYLGSARDSANLESLAKLGIRYILNVTP-------NLPNFFEKNGDFHYKQIPI 59
Query: 114 LDLPIANISCHFRDVADFIEDALENNG 140
D N+S F + +FI++AL N
Sbjct: 60 SDHWSQNLSRFFPEAIEFIDEALSQNC 86
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 95.5 bits (238), Expect = 5e-23
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 46 RHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVG 105
R ++ ++++S+G A NK L IT VIN + V + Y+D
Sbjct: 13 RQPSVSGLSQITKSLYISNGVAANNKLMLSSNQITMVINVS-------VEVVNTLYED-- 63
Query: 106 IKFLGLELLDLPIANISCHFRDVADFIEDALENNG 140
I+++ + + D P + + F +AD I G
Sbjct: 64 IQYMQVPVADSPNSRLCDFFDPIADHIHSVEMKQG 98
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 93.4 bits (233), Expect = 1e-22
Identities = 16/87 (18%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
E+ P ++L A ++ L +GIT ++N + ++++ ++ + +
Sbjct: 5 VEILPFLYLGSAYHAARRDMLDALGITALLNVSSD--------CPNHFEG-HYQYKCIPV 55
Query: 114 LDLPIANISCHFRDVADFIEDALENNG 140
D A+IS F + ++I+ + G
Sbjct: 56 EDNHKADISSWFMEAIEYIDAVKDCRG 82
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 93.4 bits (233), Expect = 1e-22
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 53 CDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLE 112
+ P + L A + + LK+ +TH++N A G + + + +
Sbjct: 4 VGVIKPWLLLGSQDAAHDLDTLKKNKVTHILNVAYG--------VENAFLS-DFTYKSIS 54
Query: 113 LLDLPIANISCHFRDVADFIEDALENNG 140
+LDLP NI +F + +FIE+A +G
Sbjct: 55 ILDLPETNILSYFPECFEFIEEAKRKDG 82
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 94.3 bits (235), Expect = 1e-22
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
++ ++FL G A N+ L+ GIT ++NA + +++ + L
Sbjct: 27 AQITSSLFLGRGSVASNRHLLQARGITCIVNATIE---------IPNFNWPQFEYVKVPL 77
Query: 114 LDLPIANISCHFRDVADFIEDALENNG 140
D+P A I +F VAD I +G
Sbjct: 78 ADMPHAPIGLYFDTVADKIHSVSRKHG 104
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 92.7 bits (231), Expect = 3e-22
Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 49 MDLDCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKF 108
M +++ P +++ + A++ E L + +TH+++ G+K+
Sbjct: 3 MGNGMNKILPGLYIGNFKDARDAEQLSKNKVTHILSVHDSA----------RPMLEGVKY 52
Query: 109 LGLELLDLPIANISCHFRDVADFIEDALENNG 140
L + D P N++ HF++ FI +
Sbjct: 53 LCIPAADSPSQNLTRHFKESIKFIHECRLRGE 84
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 91.9 bits (229), Expect = 4e-22
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 48 DMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIK 107
M +V P ++L + AK+ + L R ITH+I+ + I
Sbjct: 3 HMGNGMTKVLPGLYLGNFIDAKDLDQLGRNKITHIISIHESP---------QPLLQ-DIT 52
Query: 108 FLGLELLDLPIANISCHFRDVADFIEDALENNG 140
+L + + D P I HF++ +FI N G
Sbjct: 53 YLRIPVADTPEVPIKKHFKECINFIHCCRLNGG 85
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 93.3 bits (232), Expect = 5e-22
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
E+ P ++L A E+L + IT ++N ++ TS+ + + + +
Sbjct: 7 VEILPFLYLGSAYHASKCEFLANLHITALLNVSRR--------TSEACMT-HLHYKWIPV 57
Query: 114 LDLPIANISCHFRDVADFIEDALENNG 140
D A+IS HF++ DFI+ E G
Sbjct: 58 EDSHTADISSHFQEAIDFIDCVREKGG 84
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 94.8 bits (235), Expect = 9e-22
Identities = 29/214 (13%), Positives = 70/214 (32%), Gaps = 24/214 (11%)
Query: 46 RHDMDLDCDEVYPNIFL-SDGGTAKNKEYLKRIGITHVINAAKGKKFG-----MVNTTSD 99
RH++ ++ + + P++ + S T ++ + L++IG+ + + + + +
Sbjct: 6 RHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAY 65
Query: 100 YYKDVGIKFLGLELLDLPIANISCHFRDVADFIEDALENNG--TYVSDLKGVLKGLQLVA 157
K I+ + E+ D ++ V + A++ NG TYV G+ + +
Sbjct: 66 AKKYSDIQHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVAL 125
Query: 158 NAGIKHQTLEIQQKWTNSSFKSLASNLDQSLKSTSTTPCALLNANVLKEAAERSSVVLDG 217
Q L ++ K + + ++ A L
Sbjct: 126 TYMFWVQGY----------------KLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKR 169
Query: 218 VKAFVFKEAGSERDVSEFEQDSQYSEPTNLEKSK 251
+ + V D + + L K
Sbjct: 170 KTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGK 203
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 90.0 bits (224), Expect = 2e-21
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
V P +F+ + A E L R GIT +N ++ + G+ L + +
Sbjct: 13 ARVAPALFIGNARAAGATELLVRAGITLCVNVSRQ---------QPGPRAPGVAELRVPV 63
Query: 114 LDLPIANISCHFRDVADFIEDALENNG 140
D P ++ H +E A+ + G
Sbjct: 64 FDDPAEDLLTHLEPTCAAMEAAVRDGG 90
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 89.5 bits (223), Expect = 2e-21
Identities = 13/87 (14%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 54 DEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
+++ ++FL A N E L+ G+ +++N + +++ ++ + +
Sbjct: 5 TQIFEHVFLGSEWNASNLEDLQNRGVRYILNVTRE--------IDNFFPG-VFEYHNIRV 55
Query: 114 LDLPIANISCHFRDVADFIEDALENNG 140
D ++ ++ D FI A ++
Sbjct: 56 YDEEATDLLAYWNDTYKFISKAKKHGS 82
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, P protein structure initiative; HET:
MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 89.0 bits (221), Expect = 1e-20
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 41 DGGDCRHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDY 100
G R V N++L + A + + +V+N K
Sbjct: 37 TGDMHRAKSPTIMTRVTNNVYLGNYKNAMDAP-SSEVKFKYVLNLTMDK---------YT 86
Query: 101 YKDVGIKFLGLELLDLPIANISCHFRDVADFIEDALENNG 140
+ I + + L+D +IS +F DV F+ + N
Sbjct: 87 LPNSNINIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNE 126
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 87.7 bits (218), Expect = 1e-20
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 50 DLDCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFL 109
L ++ I L A N +Y+ I+ ++ +KD L
Sbjct: 7 TLSPTQIIQYIHLGSFLNAHNVDYIHNNNISSILLVGIE--------VPSLFKD-QCDIL 57
Query: 110 GLELLDLPIANISCHFRDVADFIEDALENNG 140
L+++ + + FI +++
Sbjct: 58 RLDIVSEEGHQLYDSIPNAIKFIIRSIQRKE 88
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 85.9 bits (213), Expect = 9e-20
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 41 DGGDCRHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDY 100
G + V N++L + A + + +V+N K
Sbjct: 20 TGDMHKAKSPTIMTRVTNNVYLGNYKNAMDAP-SSEVKFKYVLNLTMDK---------YT 69
Query: 101 YKDVGIKFLGLELLDLPIANISCHFRDVADFIEDALENNG 140
+ I + + L+D +IS +F DV F+ + N
Sbjct: 70 LPNSNINIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRNE 109
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 81.7 bits (202), Expect = 2e-18
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 2/92 (2%)
Query: 54 DEVYPNIFLSDGGTAK-NKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLE 112
+ + L + + + VI + + + TS +K G++ L L
Sbjct: 3 HRIDHTVLLGALPLKNMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLS 62
Query: 113 LLDLPIANISCHFRDVADFIEDALENNGT-YV 143
+D+ + F YV
Sbjct: 63 TVDMTGVPTLANLHKGVQFALKYQALGQCVYV 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 2e-13
Identities = 97/667 (14%), Positives = 172/667 (25%), Gaps = 256/667 (38%)
Query: 47 HDMDLDCDEV---YPNI-------FLSDGGTAKNKEYLKRI----GITHVINAAKGKKFG 92
H MD + E Y +I F+ + ++ K I I H+I +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD----- 59
Query: 93 MVNTTSDYYKDVGIKFLGLELLDLPIANISCHFRDVADFIEDALENN------------- 139
G L L + V F+E+ L N
Sbjct: 60 ---------AVSGTLRL-FWTLLSKQEEM------VQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 140 ------GTYVS------------------------DLKGVLKGLQLVAN------AGIKH 163
Y+ L+ L L+ N G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 164 QTL--------EIQQK------WTNSS-----------FKSLASNLDQSLKSTSTTPCAL 198
+ ++Q K W N + L +D + S S +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 199 -LNANVLKEAA---------ERSSVVLDGV------KAFVFKEAGSE-----RD--VSEF 235
L + ++ E +VL V AF + R V++F
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDF 280
Query: 236 EQDSQYSEPTNLEKSKLGYKKAMELTKKKDAFA-VVDEDVARAPGAPKPIPKAKNKPQLN 294
+ + + L+ + + + K +D P + N
Sbjct: 281 LSAATTTHIS-LDHHSMT----LTPDEVKSLLLKYLDCRPQDLP------REVL---TTN 326
Query: 295 P-----VAKQRKVPSSRLG--RMVSFGSLAAGLGVGTIAEVTRRTLGFGD-----SSLSV 342
P +A+ + + + V+ L TI E + L + LSV
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLT------TIIESSLNVLEPAEYRKMFDRLSV 380
Query: 343 GTTLDSAFINPAN-------------AERIVNTLCKVRGAALKIGQ-----ILSIQDSNV 384
SA I P +VN L K K + I SI
Sbjct: 381 --FPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELK 436
Query: 385 ISPELQKAFERVRKLIEGVPVDQCVDLDYESRK------------HICKLVME---LCLR 429
+ E + A R +++ + + D D H+ + R
Sbjct: 437 VKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 430 ELFQ-FRYMQ-----TDPNWSNFFYNKDTKQLILLDFGATRAYSKEFMDQYIQVIKAGAD 483
+F FR+++ W+ +T L + Y YI
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNT----LQQL---KFYKP-----YIC------- 535
Query: 484 GDKDKEFMDQYIQVIKAGADGDKDKVLTISRKMGFLTGYESKIMEEAHVNTVMIL----- 538
D D ++ ++ + I + FL E ++ + + + I
Sbjct: 536 -DNDPKY-ERLVNAI-----------------LDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 539 SEVFSEK 545
+F E
Sbjct: 577 EAIFEEA 583
Score = 55.2 bits (132), Expect = 5e-08
Identities = 53/444 (11%), Positives = 121/444 (27%), Gaps = 144/444 (32%)
Query: 223 FKEAGSERDVSEF--------EQDSQYSEPTNLEKSKL-----------GYKKAMELTKK 263
F + +DV + E D + + +K +E +
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 264 KD----AFAVVDEDVARAPGAPKPIPKAKNKPQLNPVAKQRKVPSSRLGRMVSFGSLAAG 319
+ + E + I + N V + V R+ + L
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQA 143
Query: 320 L------------GVGTIAEVTRRTLGFGDSSLSVGTTLDSAF----------INPANAE 357
L GV G G + +++ L +N N
Sbjct: 144 LLELRPAKNVLIDGVL----------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 358 R------IVNTLCKVRGAALKIGQILSIQDSNVISPELQK--AFERVRKLIEGVPVDQC- 408
++ L +I + + + + +L+ +R+L++ P + C
Sbjct: 194 SPETVLEMLQKLL------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 409 --VDLDYESRKHI------CKLVMELCLRELFQFRYMQT--DPNWSNFFYNKDTKQLILL 458
+ + ++ K CK+++ T ++F T + L
Sbjct: 248 LVLL-NVQNAKAWNAFNLSCKILL--------------TTRFKQVTDFLSAATTTHISLD 292
Query: 459 DF--GATRAYSKEFMDQYIQV--------IKAGAD------GDKDKEFM---DQYIQVIK 499
T K + +Y+ + + ++ + D + V
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-- 350
Query: 500 AGADGDKDKVLT-ISRKMGFLTGYESK-------IMEEAHVN-TVMILSEVFSEKIGEFD 550
+ DK+ T I + L E + + + ++LS ++ + I
Sbjct: 351 -----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKS-- 402
Query: 551 FGGQDTTKRITELVTN--LKSWRK 572
D + +L ++ K
Sbjct: 403 ----DVMVVVNKLHKYSLVEKQPK 422
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 50.5 bits (121), Expect = 2e-07
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 15/98 (15%)
Query: 44 DCRHDMDLDCDEVYP-NIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYK 102
D R V P I+L + + VIN A+ +
Sbjct: 35 DVRRIYPKGPLLVLPEKIYLYS-----EPTVKELLPFDVVINVAEEAND-------LRMQ 82
Query: 103 DVGIKFLGLELLDLPIANISCHFRDVADFIEDALENNG 140
+++ + I+ + I A
Sbjct: 83 VPAVEYHHYRWEHD--SQIALDLPSLTSIIHAATTKRE 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 9e-07
Identities = 65/383 (16%), Positives = 105/383 (27%), Gaps = 164/383 (42%)
Query: 92 GMVNTTSDYYKDVGIKFLGLELLDL-PIA-----NISCHFRDVADF-IEDALENNGTYVS 144
GM G++L A HF+D F I D + NN ++
Sbjct: 1630 GM----------------GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 145 DLKGVLKGLQLVAN-AGIKHQTLEIQQKWTNSSFKSLASNL--------DQSLKSTSTT- 194
G KG ++ N + + +T+ + T FK + + L +T T
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 195 PCALLNA-----NVLKEAAERSSVVLDGVKAFVFKEAG-S--ERDVSEFEQDSQYSEPTN 246
P AL LK ++ F AG S E Y+
Sbjct: 1734 P-ALTLMEKAAFEDLKSKG-----LIPADATF----AGHSLGE-----------YA---- 1768
Query: 247 LEKSKLGYKKAMELTKKKDAFA-VVD-EDVARAPGAPKPIPKAKNKPQLNPVAKQRKVPS 304
A L + A V+ E + V R
Sbjct: 1769 ----------A--LA----SLADVMSIESLVE-------------------VVFYR---- 1789
Query: 305 SRLGRMVSFGSLAAGLGVGTIAEVTRRTLGFGDSSLSVGTTLDSAFINPANAERIVNTLC 364
G V R LG + + INP R+ +
Sbjct: 1790 ---------GMTMQ-------VAVPRDELGRSNYGM--------IAINPG---RVAASFS 1822
Query: 365 K------VRGAALKIGQILSIQDSN--------VISPELQKAFERVRKLIEGVPVDQCVD 410
+ V + G ++ I N V + +L +A + V +
Sbjct: 1823 QEALQYVVERVGKRTGWLVEI--VNYNVENQQYVAAGDL-RALDTVTNV----------- 1868
Query: 411 LDYESRKHI--CKLVMELCLREL 431
L++ + I +L L L E+
Sbjct: 1869 LNFIKLQKIDIIELQKSLSLEEV 1891
Score = 45.0 bits (106), Expect = 6e-05
Identities = 73/540 (13%), Positives = 159/540 (29%), Gaps = 180/540 (33%)
Query: 107 KFLGLELLDLPIANISCHFRDVADFIEDALENNGTYVSDLKGVLKG-----LQ------L 155
KFLG + V+ +E G + L L L+ L
Sbjct: 63 KFLG--------------Y--VSSLVEP--SKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 156 VAN-AGIKHQTLEIQQKWTNSSFKSLA-----------SNLDQSLKSTSTTPCALL---- 199
A TL ++ + + S L +++ + A+
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 200 NANV-LKEAAERSSVVLDGVKAFVFKEAGSERDVSEFEQDSQYSEPTNLEKSKLGYKKAM 258
N + +E + V + A + +SE + + +E + + +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAET---LSELIRTTLDAEKV--------FTQGL 213
Query: 259 ELTKKKDAFAVVDEDVARAPGAPKPIPKAKNKPQLN--PVAKQRKVPSSRLGRMVSFGSL 316
+ ++ P P +K L P++ P + ++ +
Sbjct: 214 ------NILEWLEN--------PSNTP---DKDYLLSIPIS----CPLIGVIQLAHYVVT 252
Query: 317 AAGLGV--GTIAEVTRRTLGFGDS-----SLSVGTTLDSAFINPANAERIVNTLCKVRGA 369
A LG G + + G +++ + +S F + + + L
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF---VSVRKAITVL------ 303
Query: 370 ALKIGQILSIQDS---NVISPELQKAFERVRKLIEGVP-----VDQCVDLDYESRKHICK 421
IG + ++ + P + + EGVP + +L +++ +
Sbjct: 304 -FFIG--VRCYEAYPNTSLPPSILEDSLENN---EGVPSPMLSI---SNL---TQEQVQD 351
Query: 422 LVMELCLRELFQFRYMQTDPNWSNFFYNKDTKQL-ILLDFGATRAYSKEFMDQYIQVIKA 480
V + L P KQ+ I L + V+ +
Sbjct: 352 YVNKTN-SHL---------P---------AGKQVEISL-VNGAKNL----------VV-S 380
Query: 481 GADGDKDKEFMDQYIQVIKAGADGDKDKVLTISRK----MGFL---TGYESKIMEEAHVN 533
G + ++ ++ KA + D+ ++ RK FL + + S ++ A
Sbjct: 381 GPP--QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA--- 435
Query: 534 TVMILSEVFSEKIGEFD-----------FGGQDT-------TKRITELVTNLK-SWRKLM 574
+ +I ++ + F+ F G D ++RI + + L W
Sbjct: 436 SDLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Score = 37.3 bits (86), Expect = 0.017
Identities = 29/173 (16%), Positives = 51/173 (29%), Gaps = 56/173 (32%)
Query: 428 LRELFQFRYMQTDPNWSNFFYNKD----TKQLIL--LDFGATRAYSKEFMDQYIQVIKAG 481
L+E F + P + F D +L+ L + ++ + Q+ QV+
Sbjct: 33 LQEQFN----KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV-EPSKVGQFDQVLNLC 87
Query: 482 ADGDKDKEFMDQY-----IQVIKAGADGDKDKVLTISRKMGFLTGY-------------- 522
EF + Y I + A + D T+ + + Y
Sbjct: 88 LT-----EFENCYLEGNDIHALAAKLLQENDT--TLVKTKELIKNYITARIMAKRPFDKK 140
Query: 523 -ESKIMEEAHVNTVMILSEVFSEKIGEFDFGGQ-DTTKRITELVTNLKSWRKL 573
S + ++ + FGGQ +T EL R L
Sbjct: 141 SNSALFRAVGEGNA----QLVAI------FGGQGNTDDYFEEL-------RDL 176
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 35.1 bits (81), Expect = 0.023
Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 18/92 (19%)
Query: 56 VYPNIFL--SDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLEL 113
V P + + ++L +G+ H+++ + + D GL L
Sbjct: 12 VLPGRLAGLALPRLPAHYQFLLDLGVRHLVS---------LTERGPPHSD---SCPGLTL 59
Query: 114 LDLPIANISC----HFRDVADFIEDALENNGT 141
L I + +++A
Sbjct: 60 HRLRIPDFCPPAPDQIDRFVQIVDEANARGEA 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.059
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 170 QKWTNSSFKSLASNLDQSLK--STSTTPCAL-LNANV 203
+K + K L + SLK + + P AL + A +
Sbjct: 18 EK---QALKKLQA----SLKLYADDSAP-ALAIKATM 46
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 33.6 bits (76), Expect = 0.062
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 12/124 (9%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFL--GLE 112
V IF S + N +L+ +G+ +I + + K GI+ G+E
Sbjct: 10 MVDNGIFRSGFPDSANFSFLQTLGLRSIIYLC---PEPYPESNLQFLKSNGIRLFQFGIE 66
Query: 113 LLDLPIANISCHFRDVADFIEDALENNGTYVSDLKGVLKGLQLVANAGIKHQTLEIQQKW 172
P NI H +A + +N+ + +G + LV L QKW
Sbjct: 67 GNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGC-------LRKLQKW 119
Query: 173 TNSS 176
+S
Sbjct: 120 CLTS 123
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 31.4 bits (71), Expect = 0.40
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 72 EYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELLDLPIANISC-HFRDVAD 130
++ G+ V+ + + DYY + +K GL+ L +PI +
Sbjct: 22 LEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSI-LKKNGLQPLHIPIPDGGVPSDSQFLT 80
Query: 131 FIEDALENNGT 141
++ L
Sbjct: 81 IMKWLLSEKEG 91
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl
transferase domain, ATP-binding, nucleotide-BIND
nucleotidyltransferase; 2.40A {Escherichia coli}
Length = 498
Score = 30.3 bits (68), Expect = 1.7
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 478 IKAGADGDKDKEFMDQYIQVIKAGAD------GDKDKVLTISRKMGFLTGYESKIMEEAH 531
IKA G D EF+ QY+ + A D ++L + + + E+ + A+
Sbjct: 397 IKADEGGITDIEFITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAY 456
Query: 532 V 532
Sbjct: 457 T 457
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 29.4 bits (65), Expect = 3.1
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 394 ERVRKLIEGVPVDQCVDLDYESRKHICKLVMELCLRELFQFRYMQTDPNWSNFFYNKDTK 453
+ + P+ +D + + +++ +F + N SNF++NK
Sbjct: 160 AHMLNWLRFFPLGHIHIVDGDRLIRDPFPEI----QKVERFLKLSPQINASNFYFNKTKG 215
Query: 454 QLILLDFGATRAYSKEFMDQYIQV 477
L D G R + + QV
Sbjct: 216 FYCLRDSGKDRCLHESKGRAHPQV 239
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 27.2 bits (60), Expect = 7.7
Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 18/97 (18%)
Query: 302 VPSSRLGRMVSFGSLAAGLGVGTIAEVTRRTLGFGDSSLSVGTTLDSAFINPANAERIVN 361
P + GR+V + G+ + VT L + F+ R
Sbjct: 61 YPVTLWGRLV--AVVVMVAGITSFGLVT--------------AALATWFVGREQERR--G 102
Query: 362 TLCKVRGAALKIGQILSIQDSNVISPELQKAFERVRK 398
+ A + + + + L++ + R+
Sbjct: 103 HFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNRR 139
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell
membrane, cell shape, cell WALL biogenesis/degradation,
membrane; 2.05A {Mycobacterium tuberculosis}
Length = 483
Score = 28.0 bits (63), Expect = 9.4
Identities = 5/33 (15%), Positives = 8/33 (24%), Gaps = 1/33 (3%)
Query: 311 VSFGSLAAGLGVGTIAEVTRRTLGFGDSSLSVG 343
+F L G + + R G
Sbjct: 276 TAFVQLGIRTGADALRSMARA-FGLDSPPRPTP 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,610,822
Number of extensions: 540397
Number of successful extensions: 1514
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1482
Number of HSP's successfully gapped: 46
Length of query: 574
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 475
Effective length of database: 3,937,614
Effective search space: 1870366650
Effective search space used: 1870366650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.4 bits)