RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13594
(574 letters)
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 77.1 bits (189), Expect = 4e-17
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 12/123 (9%)
Query: 21 KQLNDIISTVRPQAKPLPGYDGGDCRHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGIT 80
+ LND++S DG C C+EV P I++ + A++ L+++GIT
Sbjct: 3 QDLNDLLS------------DGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGIT 50
Query: 81 HVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELLDLPIANISCHFRDVADFIEDALENNG 140
HV+NAA+G+ F VNT +++YKD GI +LG++ D N+S +F ADFI+ AL
Sbjct: 51 HVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKN 110
Query: 141 TYV 143
V
Sbjct: 111 GRV 113
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1
(mkp3) [TaxId: 9606]}
Length = 144
Score = 54.4 bits (130), Expect = 2e-09
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELL 114
E+ P ++L + N + L+ GI +++N N + + K+ + +
Sbjct: 6 EILPFLYLGCAKDSTNLDVLEEFGIKYILNV-------TPNLPNLFENAGEFKYKQIPIS 58
Query: 115 DLPIANISCHFRDVADFIEDAL-ENNGTYVSDLKGVLKGLQLVANAGIKHQTLEIQQ 170
D N+S F + FI++A +N G V L G+ + + + ++ L +
Sbjct: 59 DHWSQNLSQFFPEAISFIDEARGKNCGVLVHSLAGISRSVTVTVAYLMQKLNLSMND 115
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1
[TaxId: 9606]}
Length = 145
Score = 54.0 bits (129), Expect = 2e-09
Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 55 EVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGMVNTTSDYYKDVGIKFLGLELL 114
E+ P +FL + + + L+ GIT V+N V+ + + + ++ + +
Sbjct: 6 EILPYLFLGSCSHSSDLQGLQACGITAVLN---------VSASCPNHFEGLFRYKSIPVE 56
Query: 115 DLPIANISCHFRDVADFIEDALENN-GTYVSDLKGVLKGLQLVA 157
D + IS F++ FI+ + V G+ + +
Sbjct: 57 DNQMVEISAWFQEAIGFIDWVKNSGGRVLVHSQAGISRSATICL 100
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 36.6 bits (84), Expect = 0.003
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 21/107 (19%)
Query: 36 PLPGYDGGDCRHDMDLDCDEVYPNIFLSDGGTAKNKEYLKRIGITHVINAAKGKKFGM-- 93
LPG D R ++ D +E LK GI + +
Sbjct: 23 ALPGCKFKDVRRNVQKDTEE------------------LKSCGIQDIFVFCTRGELSKYR 64
Query: 94 VNTTSDYYKDVGIKFLGLELLDLPIANISCHFRDVADFIEDALENNG 140
V D Y+ GI + D ++ + + L+N
Sbjct: 65 VPNLLDLYQQCGIITHHHPIADGG-TPDIASCCEIMEELTTCLKNYR 110
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 30.9 bits (69), Expect = 0.35
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 393 FERVRKLIEGVPVDQCVDLDYESRKHICKLVMELCLRE-LFQFRY-MQTDPNWSNFFYNK 450
E R L E + DL E+ + + + E + LF RY P ++ +
Sbjct: 163 AEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDG 222
Query: 451 DTKQLILLDFGATRAYSKEFMDQYIQVIKAGADGDKDKEFMDQYIQVIKAGA 502
T+ LL G + + +Y +++++ D E Y++V K G
Sbjct: 223 TTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGM 274
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase,
central domain {Deinococcus radiodurans [TaxId: 1299]}
Length = 420
Score = 30.1 bits (66), Expect = 0.81
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 55 EVYPNIFLSDG---GTAKNKEYLKRIGITHV 82
EV+ F +G A+ YLK +G+T +
Sbjct: 21 EVHVGTFTPEGTYRAAAEKLPYLKELGVTAI 51
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 29.2 bits (64), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 55 EVYPNIFLSDG---GTAKNKEYLKRIGITHV 82
E++ F +G G + +YLK +GIT +
Sbjct: 16 EIHVGTFTPEGTFEGVIRKLDYLKDLGITAI 46
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase
{Pseudomonas nautica [TaxId: 2743]}
Length = 166
Score = 27.9 bits (61), Expect = 2.2
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 271 DEDVARAPGAPKPIPKAKNKPQLNPVAKQRKVPSSRLGRMVSF-GSLAAGLGVGTIAEVT 329
D + RA +PIPK N + + KV LG+M F L+ I+ T
Sbjct: 1 DNLMERANSMFEPIPKYPPVIDGNELTQA-KV---ELGKMEFFEPRLS---SSHLISCNT 53
Query: 330 RRTLGFGDSSLSVGTTLDSAFINPANAERIVNT 362
+G G + P N+ + N
Sbjct: 54 CHNVGLGGDDELPTSIGHGWQKGPRNSPTVFNA 86
>d2giaa1 d.18.1.4 (A:56-221) Guide RNA binding protein gBP25
{Trypanosoma brucei [TaxId: 5691]}
Length = 166
Score = 27.0 bits (59), Expect = 4.9
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 142 YVSDLKGVLKGLQLVANAGIKHQTLEIQQKWTNSSFK-SLASNLDQSLKSTSTTP 195
Y + VL+G + + +E+ ++TN++F + A+ +LK TST P
Sbjct: 75 YTARFLAVLEG---------RSEKVEVHSRYTNATFTPNPAAPYTFTLKCTSTRP 120
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 27.1 bits (59), Expect = 5.6
Identities = 10/77 (12%), Positives = 24/77 (31%)
Query: 386 SPELQKAFERVRKLIEGVPVDQCVDLDYESRKHICKLVMELCLRELFQFRYMQTDPNWSN 445
SPE + + LI P Q D ++ +R ++ ++ + + R
Sbjct: 26 SPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYGISDPEEI 85
Query: 446 FFYNKDTKQLILLDFGA 462
++ +
Sbjct: 86 MWFKNSVHRGHPEPLDL 102
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase,
C-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 266
Score = 26.4 bits (58), Expect = 9.9
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 450 KDTKQLILLDFGATRAYSKEFMDQYIQVIKAGADG 484
++ L + DFG R +S + ++ +K G
Sbjct: 24 RELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGP 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,047,979
Number of extensions: 97789
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 16
Length of query: 574
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 484
Effective length of database: 1,171,896
Effective search space: 567197664
Effective search space used: 567197664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.5 bits)