BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13596
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
Length = 364
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLKNTLTITDFPILKVMS-MEYCYQRN 60
G + NG SYRF+I+ +FGSDLQK+ + + K FS K L ++ L+++ +EY ++
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS----LRILDILEYIHEHE 172
Query: 61 WQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQ---KKLDAEAKQLH 117
+ + + + L + + + LVD+ G+A Y + K A+ K+ H
Sbjct: 173 YVHGDIKASNLLLNYKNPDQVY--------LVDY---GLAYRYCPEGVHKAYAADPKRCH 221
Query: 118 TNAITFS 124
I F+
Sbjct: 222 DGTIEFT 228
>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
Length = 361
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLKNTLTITDFPILKVMS-MEYCYQRN 60
G + NG SYRF+I+ +FGSDLQK+ + + K FS K L ++ L+++ +EY ++
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS----LRILDILEYIHEHE 172
Query: 61 WQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQ---KKLDAEAKQLH 117
+ + + + L + + + LVD+ G+A Y + K+ + K+ H
Sbjct: 173 YVHGDIKASNLLLNYKNPDQV--------YLVDY---GLAYRYCPEGVHKEYKEDPKRCH 221
Query: 118 TNAITFS 124
I F+
Sbjct: 222 DGTIEFT 228
>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
1(Vrk1)
Length = 368
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLKNTLTITDFPILKVMS-MEYCYQRN 60
G + NG SYRF+I+ +FGSDLQK+ + + K FS K L ++ L+++ +EY ++
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS----LRILDILEYIHEHE 172
Query: 61 WQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQ---KKLDAEAKQLH 117
+ + + + L + + + LVD+ G+A Y + K+ + K+ H
Sbjct: 173 YVHGDIKASNLLLNYKNPDQV--------YLVDY---GLAYRYCPEGVHKEYKEDPKRCH 221
Query: 118 TNAITFS 124
I F+
Sbjct: 222 DGTIEFT 228
>pdb|2V62|A Chain A, Structure Of Vaccinia-Related Kinase 2
pdb|2V62|B Chain B, Structure Of Vaccinia-Related Kinase 2
Length = 345
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTI 42
G E G SYRF+++ + G DLQK+ ++ F L +
Sbjct: 117 GLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQL 156
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 8 NGNSYRFIIISKFGSDLQKLLDEHKEFSL--KNTLTITDFPILKVMSMEYCYQRNW 61
NGN Y +++ + D ++++E + + + NTL + F I V ++Y Y R+W
Sbjct: 195 NGN-YDYLMYADIDMDHPEVINELRNWGVWYTNTLNLDGFRIDAVKHIKYSYTRDW 249
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 8 NGNSYRFIIISKFGSDLQKLLDEHKEFSL--KNTLTITDFPILKVMSMEYCYQRNW 61
NGN Y +++ + D ++++E + + + NTL + F I V ++Y + R+W
Sbjct: 195 NGN-YDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFTRDW 249
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 147 VENWAKVIEEDMRLISAALETAYEGSINENTSAAAAK 183
+E W+ V +E+M L A E A +G E+TS AK
Sbjct: 155 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 191
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 147 VENWAKVIEEDMRLISAALETAYEGSINENTSAAAAK 183
+E W+ V +E+M L A E A +G E+TS AK
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 147 VENWAKVIEEDMRLISAALETAYEGSINENTSAAAAK 183
+E W+ V +E+M L A E A +G E+TS AK
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 147 VENWAKVIEEDMRLISAALETAYEGSINENTSAAAAK 183
+E W+ V +E+M L A E A +G E+TS AK
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 147 VENWAKVIEEDMRLISAALETAYEGSINENTSAAAAK 183
+E W+ V +E+M L A E A +G E+TS AK
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 147 VENWAKVIEEDMRLISAALETAYEGSINENTSAAAAK 183
+E W+ V +E+M L A E A +G E+TS AK
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 147 VENWAKVIEEDMRLISAALETAYEGSINENTSAAAAK 183
+E W+ V +E+M L A E A +G E+TS AK
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 82 SAANDLTQALVDHLNVGVAQAYLNQKK 108
S+A+D QA+V+HL G + N K
Sbjct: 71 SSADDFAQAMVEHLKKGTINEFRNMYK 97
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 82 SAANDLTQALVDHLNVGVAQAYLNQKK 108
S+A+D QA+V+HL G + N K
Sbjct: 70 SSADDFAQAMVEHLKKGTINEFRNMYK 96
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From
Streptococcus Pneumoniae
Length = 547
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 5 QEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFP 46
QE +GN FI + + GSD +L+ + F++ +T DFP
Sbjct: 1 QESSGNKIHFINVQEGGSD-AIILESNGHFAMVDTGEDYDFP 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,925,093
Number of Sequences: 62578
Number of extensions: 173964
Number of successful extensions: 486
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 31
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)