BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13596
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1Z9S1|BL1S1_DROME Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Drosophila melanogaster GN=blos1 PE=1 SV=2
Length = 147
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 86/109 (78%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
EVRRKEA+ A+N+LTQ+LVD LNVGVAQAYLNQK+LDAEAKQLH A F+KQT QWL L
Sbjct: 21 EVRRKEAIEASNELTQSLVDTLNVGVAQAYLNQKRLDAEAKQLHLGATNFAKQTHQWLQL 80
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTSAAAA 182
+D F++ALK++GDVENWA+ IE DM I+ LE AY+ S TS+ A
Sbjct: 81 IDQFSTALKDLGDVENWARSIEGDMHTINQTLELAYKASRATQTSSGAG 129
>sp|Q0VFD8|BL1S1_XENTR Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Xenopus tropicalis GN=bloc1s1 PE=2 SV=1
Length = 125
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
E RRK+A++AA LT+ALVDHLNVGVAQAY+NQ+KLD E K L T A F+KQT QW+SL
Sbjct: 21 EKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVKTLQTQAAQFAKQTTQWISL 80
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
V+NFN ALKEIGDVENWA+ IE+DMR+I+ ALE Y+G + + S
Sbjct: 81 VENFNQALKEIGDVENWARSIEKDMRIIATALEYVYKGQLQPSAS 125
>sp|Q5R7L8|BL1S1_PONAB Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Pongo abelii GN=BLOC1S1 PE=2 SV=2
Length = 153
Score = 140 bits (353), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
E RR+EA++AA LT+ALVDHLNVGVAQAY+NQ+KLD E K L A F+KQT QW+ +
Sbjct: 49 EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 108
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
V+NFN ALKEIGDVENWA+ IE DMR I+ ALE Y+G + S
Sbjct: 109 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 153
>sp|P78537|BL1S1_HUMAN Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Homo sapiens GN=BLOC1S1 PE=1 SV=2
Length = 153
Score = 140 bits (353), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
E RR+EA++AA LT+ALVDHLNVGVAQAY+NQ+KLD E K L A F+KQT QW+ +
Sbjct: 49 EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 108
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
V+NFN ALKEIGDVENWA+ IE DMR I+ ALE Y+G + S
Sbjct: 109 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 153
>sp|D3ZKU7|BL1S1_RAT Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Rattus norvegicus GN=Bloc1s1 PE=3 SV=1
Length = 125
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
E RR+EA++AA LT+ALVDHLNVGVAQAY+NQ+KLD E K L A F+KQT QW+ +
Sbjct: 21 EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 80
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
V+NFN ALKEIGDVENWA+ IE DMR I+ ALE Y+G + S
Sbjct: 81 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 125
>sp|Q2NKW0|BL1S1_BOVIN Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Bos taurus GN=BLOC1S1 PE=2 SV=1
Length = 125
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
E RR+EA++AA LT+ALVDHLNVGVAQAY+NQ+KLD E K L A F+KQT QW+ +
Sbjct: 21 EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 80
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
V+NFN ALKEIGDVENWA+ IE DMR I+ ALE Y+G + S
Sbjct: 81 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 125
>sp|O55102|BL1S1_MOUSE Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Mus musculus GN=Bloc1s1 PE=1 SV=2
Length = 125
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
E RR+EA++AA LT+ALVDHLNVGVAQAY+NQ+KLD E K L A F+KQT QW+ +
Sbjct: 21 EKRRREAIAAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGM 80
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
V+NFN ALKEIGDVENWA+ IE DMR I+ ALE Y+G + S
Sbjct: 81 VENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS 125
>sp|Q22616|BL1S1_CAEEL Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Caenorhabditis elegans GN=blos-1 PE=1 SV=1
Length = 129
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 68/95 (71%)
Query: 77 RKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSLVDN 136
+ EA+ AA L+ A+VDHLN VAQAY NQK+LD EAK+ N+ +KQT+QWL + +
Sbjct: 20 KNEAIVAAQTLSTAVVDHLNAKVAQAYGNQKRLDVEAKRFENNSAALAKQTEQWLFITEG 79
Query: 137 FNSALKEIGDVENWAKVIEEDMRLISAALETAYEG 171
N ALKEIGDVENW+K IE DM++I+ L AYE
Sbjct: 80 LNYALKEIGDVENWSKTIENDMKIITETLRRAYEA 114
>sp|Q54VX7|BL1S1_DICDI Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Dictyostelium discoideum GN=bloc1s1 PE=3 SV=1
Length = 135
Score = 106 bits (264), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 69/99 (69%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
EV +KEA+++ +T L+D +N GVA + NQKKL+ EA+ L N FSKQT QW+ L
Sbjct: 21 EVLKKEAIASMGVVTNGLIDSVNTGVACIFANQKKLETEARLLQANTAKFSKQTNQWIHL 80
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGS 172
++NFN++LKEIGDVENW+K IE DM IS +E Y S
Sbjct: 81 IENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLYINS 119
>sp|O22929|BL1S1_ARATH Biogenesis of lysosome-related organelles complex 1 subunit 1
OS=Arabidopsis thaliana GN=BLOS1 PE=1 SV=1
Length = 152
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
E RKEA+ A LV +N GV + ++N+K++++E + L F KQT QWL++
Sbjct: 53 ERSRKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAV 112
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYE 170
NSA+KEIGD ENW K +E D + I+AA+ +E
Sbjct: 113 THAVNSAVKEIGDFENWMKTMEFDCKKITAAIRNIHE 149
>sp|Q32PI1|VRK1_BOVIN Serine/threonine-protein kinase VRK1 OS=Bos taurus GN=VRK1 PE=2
SV=1
Length = 396
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLKNTLTITDFPILKVMS-MEYCYQRN 60
G + NG SYRF+II +FGSDLQK+ + + K FS K L ++ L+++ +EY ++
Sbjct: 117 GLHDKNGKSYRFMIIDRFGSDLQKIYEANAKRFSRKTVLQLS----LRILDILEYIHEHE 172
Query: 61 WQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQ---KKLDAEAKQLH 117
+ + + + LS N LVD+ G+A Y + K+ + K+ H
Sbjct: 173 YVHGDIKASNL--------LLSYKNPDQVYLVDY---GLAYRYCPEGTHKEYKEDPKRCH 221
Query: 118 TNAITFS 124
+ F+
Sbjct: 222 DGTVEFT 228
>sp|Q99986|VRK1_HUMAN Serine/threonine-protein kinase VRK1 OS=Homo sapiens GN=VRK1 PE=1
SV=1
Length = 396
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLKNTLTITDFPILKVMS-MEYCYQRN 60
G + NG SYRF+I+ +FGSDLQK+ + + K FS K L ++ L+++ +EY ++
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS----LRILDILEYIHEHE 172
Query: 61 WQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQ---KKLDAEAKQLH 117
+ + + + L + + + LVD+ G+A Y + K+ + K+ H
Sbjct: 173 YVHGDIKASNLLLNYKNPDQV--------YLVDY---GLAYRYCPEGVHKEYKEDPKRCH 221
Query: 118 TNAITFS 124
I F+
Sbjct: 222 DGTIEFT 228
>sp|Q80X41|VRK1_MOUSE Serine/threonine-protein kinase VRK1 OS=Mus musculus GN=Vrk1 PE=1
SV=2
Length = 440
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLKNTLTITDFPILKVMS-MEYCYQRN 60
G + NG SYRF+I+ +FGSDLQK+ + + K FS K L ++ L+++ +EY ++
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLS----LRILDILEYIHEHE 172
Query: 61 WQKQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLN---QKKLDAEAKQLH 117
+ + + + LS N LVD+ G+A Y K+ + K+ H
Sbjct: 173 YVHGDIKASNL--------LLSHKNPDQVYLVDY---GLAYRYCPDGVHKEYKEDPKRCH 221
Query: 118 TNAITFS 124
+ F+
Sbjct: 222 DGTLEFT 228
>sp|Q7ZUS1|VRK1_DANRE Serine/threonine-protein kinase VRK1 OS=Danio rerio GN=vrk1 PE=2
SV=1
Length = 425
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEH-KEFSLK 37
G E NG YRF+++ +FG+DLQKL + + K+FS K
Sbjct: 118 GFHEKNGKRYRFMVMDRFGTDLQKLFEGNGKKFSRK 153
>sp|Q8BN21|VRK2_MOUSE Serine/threonine-protein kinase VRK2 OS=Mus musculus GN=Vrk2 PE=1
SV=2
Length = 503
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQ 62
G + G SYRF+++ + G DLQKLLD++ F LT+ I + +EY ++ +
Sbjct: 107 GLTDFKGRSYRFMVMERLGIDLQKLLDQNGGF---KKLTVLQLGIRMLDVLEYIHENEYV 163
Query: 63 KQAVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYL---NQKKLDAEAKQLHTN 119
+ + + L+ + + A + G++ Y N K+ + ++ H
Sbjct: 164 HGDIKAANLLLDFTNPDRVYLA-----------DYGLSYRYCPNGNHKQYQEDPRKGHNG 212
Query: 120 AITFS 124
I F+
Sbjct: 213 TIEFT 217
>sp|Q7KRY6|NHK1_DROME Nucleosomal histone kinase 1 OS=Drosophila melanogaster GN=ball
PE=1 SV=1
Length = 599
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEH 31
G E NG +RFI++ ++GSDL K L+++
Sbjct: 123 GSVEVNGEKHRFIVMPRYGSDLTKFLEQN 151
>sp|Q86Y07|VRK2_HUMAN Serine/threonine-protein kinase VRK2 OS=Homo sapiens GN=VRK2 PE=1
SV=3
Length = 508
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTI 42
G E G SYRF+++ + G DLQK+ ++ F L +
Sbjct: 107 GLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQL 146
>sp|Q6CWM9|BL1S1_KLULA Biogenesis of lysosome-related organelles complex 1 subunit BLS1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=BLS1 PE=3
SV=1
Length = 104
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 114 KQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAAL 165
K+LH K + L + +N+ GD++NWA++I+ D+R++ +
Sbjct: 44 KELHDKKFK-EKGVTPLIRLYEKYNACALNDGDLQNWAELIDRDIRILEGTI 94
>sp|C5DS11|BL1S1_ZYGRC Biogenesis of lysosome-related organelles complex 1 subunit BLS1
OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732
/ NBRC 1130 / NCYC 568 / NRRL Y-229) GN=BLS1 PE=3 SV=1
Length = 101
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 133 LVDNFNSALKEIGDVENWAKVIEEDMRLISAALETA 168
L D +N + GD+++WA++I+ D+R++ ++ A
Sbjct: 63 LHDKYNEIVMRQGDLQSWAELIDRDLRVLELTMQLA 98
>sp|Q95NE0|NAR4_PANTR Ecto-ADP-ribosyltransferase 4 OS=Pan troglodytes GN=ART4 PE=3 SV=1
Length = 314
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 1 MKGQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRN 60
+K + + GN F I + G+ +Q FSLK + I + + KV++M Y + N
Sbjct: 213 LKEEAQEFGNQTLFTIFTCLGAPVQ-------YFSLKKEVLIPPYELFKVINMSYHPRGN 265
Query: 61 W 61
W
Sbjct: 266 W 266
>sp|Q93070|NAR4_HUMAN Ecto-ADP-ribosyltransferase 4 OS=Homo sapiens GN=ART4 PE=2 SV=2
Length = 314
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 1 MKGQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRN 60
+K + + GN F I + G+ +Q FSLK + I + + KV++M Y + N
Sbjct: 213 LKEEAQEFGNQTLFTIFTCLGAPVQ-------YFSLKKEVLIPPYELFKVINMSYHPRGN 265
Query: 61 W 61
W
Sbjct: 266 W 266
>sp|Q7NE01|SYL_GLOVI Leucine--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=leuS PE=3 SV=1
Length = 847
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 99 VAQAYLNQKKLDAEAKQLHTNAITFSKQTQQW-LSLVDNFNSALKEIGDVENW---AKVI 154
V Q L +++DAE + + A+ + +QW L + D L+ +G + +W +V+
Sbjct: 158 VDQTVLANEQVDAEGRSWRSGALVEKRPLEQWYLKITDYAEELLQALGTLGDWPERVRVM 217
Query: 155 EED 157
+E+
Sbjct: 218 QEN 220
>sp|Q0SRE2|GRPE_CLOPS Protein GrpE OS=Clostridium perfringens (strain SM101 / Type A)
GN=grpE PE=3 SV=1
Length = 208
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 89 QALVDHLNVGVAQAYLN-QKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDV 147
+AL D L + ++ Y N +K+ D E ++++T+A + L ++DN AL G V
Sbjct: 75 EALKDRL-LRISSEYENYRKRTDKEKERIYTDAC--EDVLIKMLPVLDNLERALAVDGTV 131
Query: 148 ENWAKVIEEDMRLISAALE 166
E+ K +E +R ALE
Sbjct: 132 EDLKKGVEMTVRQFEDALE 150
>sp|P32033|YCF2_CUSRE Protein ycf2 OS=Cuscuta reflexa GN=ycf2 PE=3 SV=2
Length = 2003
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 7 HNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQAV 66
H G S+ I I +G + +KLL+E + S +L + + + +EY +QR QK+
Sbjct: 349 HKGFSFS-IYIDSYGLEKKKLLNEARAESKNKSLWVLSPILFRYEEIEYFFQRIIQKR-- 405
Query: 67 TSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTN 119
VR + DL Q +V + + +A +NQ +L Q+ ++
Sbjct: 406 --------VRWISCGNGLADLKQKMVVFASKNIMEA-VNQSRLIQNMIQIKSS 449
>sp|Q03976|RT24_YEAST 37S ribosomal protein S24, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RSM24 PE=1
SV=1
Length = 319
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 1 MKGQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEY 55
+KG + NS R + + S Q+L+ +H+E N L + P+L EY
Sbjct: 118 IKGGNVNRDNSLRPFMFDELPSQAQELVAQHREQRFYNRLAAYELPLLAQYRQEY 172
>sp|Q1D7R9|SYGB_MYXXD Glycine--tRNA ligase beta subunit OS=Myxococcus xanthus (strain DK
1622) GN=glyS PE=3 SV=1
Length = 703
Score = 30.0 bits (66), Expect = 8.8, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 106 QKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEI 144
QK +D + LHT A T ++ T L VD+F+ AL+EI
Sbjct: 611 QKLVDEPERNLHT-AFTQARSTVSGLVRVDDFSGALREI 648
>sp|A0FKG7|CAN7_PIG Calpain-7 OS=Sus scrofa GN=CAPN7 PE=2 SV=1
Length = 813
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 34 FSLKNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEVRRKEALSAANDLTQALVD 93
FS+K T+ ++D + +++ Y+R + K+ +TS+I + K+ S N + +V
Sbjct: 280 FSIKQTI-VSDCSFVASLAISAAYERRFTKKLITSIIYP---QNKDGESEYNPCGKYMVK 335
Query: 94 -HLNVGVAQAYL--NQKKLDAEAKQLHTNAITFSKQTQQWLSLVD 135
HLN GV + + +Q +D + + L + + + +++ W+SL++
Sbjct: 336 LHLN-GVPRKVIIDDQLPVDHKGELLCSYS---NNKSELWVSLIE 376
>sp|Q0TNS6|GRPE_CLOP1 Protein GrpE OS=Clostridium perfringens (strain ATCC 13124 / NCTC
8237 / Type A) GN=grpE PE=3 SV=1
Length = 208
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 89 QALVDHLNVGVAQAYLN-QKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDV 147
+AL D L + ++ Y N +K+ D E ++++T+A + L ++DN AL G V
Sbjct: 75 EALKDRL-LRISAEYENYRKRTDKEKERIYTDAC--EDVLIKMLPVLDNLERALAVDGTV 131
Query: 148 ENWAKVIEEDMRLISAALE 166
E+ K +E +R ALE
Sbjct: 132 EDLKKGVEMTVRQFEDALE 150
>sp|B1XP90|SYL_SYNP2 Leucine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27264 / PCC
7002 / PR-6) GN=leuS PE=3 SV=1
Length = 852
Score = 30.0 bits (66), Expect = 9.5, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 99 VAQAYLNQKKLDAEAKQLHTNAITFSKQTQQW-LSLVDNFNSALKEIGDVENW---AKVI 154
+ Q L +++DAE + + AI K +QW L + D L+++ ++ W K++
Sbjct: 161 IDQTVLANEQVDAEGRSWRSGAIVEKKLLRQWFLKITDYAEELLQDLNTLDGWPERVKLM 220
Query: 155 EED 157
+E+
Sbjct: 221 QEN 223
>sp|Q8XIT0|GRPE_CLOPE Protein GrpE OS=Clostridium perfringens (strain 13 / Type A)
GN=grpE PE=3 SV=1
Length = 208
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 89 QALVDHLNVGVAQAYLN-QKKLDAEAKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDV 147
+AL D L + ++ Y N +K+ D E ++++T+A + L ++DN AL G V
Sbjct: 75 EALKDRL-LRISAEYENYRKRTDKEKERIYTDAC--EDVLIKMLPVLDNLERALAVDGTV 131
Query: 148 ENWAKVIEEDMRLISAALE 166
E+ K +E +R ALE
Sbjct: 132 EDLKKGVEMTVRQFEDALE 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,553,419
Number of Sequences: 539616
Number of extensions: 2192692
Number of successful extensions: 5815
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 5787
Number of HSP's gapped (non-prelim): 68
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)