RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13596
(186 letters)
>gnl|CDD|218987 pfam06320, GCN5L1, GCN5-like protein 1 (GCN5L1). This family
consists of several eukaryotic GCN5-like protein 1
(GCN5L1) sequences. The function of this family is
unknown.
Length = 121
Score = 153 bits (388), Expect = 2e-48
Identities = 62/105 (59%), Positives = 81/105 (77%)
Query: 74 EVRRKEALSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAITFSKQTQQWLSL 133
E R+EA+++AN LT ALVD +N GVAQAY NQK+L+AEAK L + F+KQT+QWL+L
Sbjct: 17 ERLRREAIASANALTDALVDTVNAGVAQAYANQKRLEAEAKALQATSAAFAKQTEQWLTL 76
Query: 134 VDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYEGSINENTS 178
++NFN+ALKEIGDVENWA+ IE DM+ I++ALE AY+ S
Sbjct: 77 IENFNTALKEIGDVENWARSIENDMKTIASALEEAYKAKRPAQPS 121
>gnl|CDD|223172 COG0094, RplE, Ribosomal protein L5 [Translation, ribosomal
structure and biogenesis].
Length = 180
Score = 27.6 bits (62), Expect = 3.2
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 95 LNVGVAQAYLNQKKLDAEAKQL-----HTNAITFSKQT 127
+N+GV +A + K+L+ AK L IT +K++
Sbjct: 36 VNMGVGEAAADGKRLEKAAKDLELITGQKPVITKAKKS 73
>gnl|CDD|237153 PRK12642, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 241
Score = 27.7 bits (62), Expect = 3.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 89 QALVDHLNVGVAQAYLNQKKLDA--EAKQLHTNAITFSKQTQQWLSLVDNFNSALKE 143
Q +VD +VGV Q YL ++A E QL I+ S+ + SL+ S++ E
Sbjct: 180 QPVVDRNSVGVVQGYLEGSNVNAMTEMTQL----ISVSRAFESVSSLMRQSESSVSE 232
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 27.5 bits (62), Expect = 4.9
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 130 WLSLVDNFNSALKEIGDVENWAKVI---------EEDMRLISAALETAYEGSINENT 177
WL++ N L ++ D +W +++ EED + A EG +E+T
Sbjct: 340 WLAVRGN----LDKLSDAADWWQIVHGPITPVILEEDRAFLKQAAALLPEGPWDEDT 392
>gnl|CDD|179905 PRK04972, PRK04972, putative transporter; Provisional.
Length = 558
Score = 27.0 bits (60), Expect = 6.6
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 67 TSVIIGLEVRRKEALSAANDLTQALVDHLNVGVAQAYL 104
T V++G + + + + L+ AL D+L++G A YL
Sbjct: 132 TPVLVGAGDTLRHSGAESRQLSLAL-DNLSLGYALTYL 168
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene
cyclases, protein prenyltransferases beta subunit, two
broadly specific proteinase inhibitors
alpha2-macroglobulin (alpha (2)-M) and pregnancy zone
protein (PZP) and, the C3 C4 and C5 components of
vertebrate complement. Class II terpene cyclases include
squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase
(OSQCY), these integral membrane proteins catalyze a
cationic cyclization cascade converting linear
triterpenes to fused ring compounds. The protein
prenyltransferases include protein farnesyltransferase
(FTase) and geranylgeranyltransferase types I and II
(GGTase-I and GGTase-II) which catalyze the
carboxyl-terminal lipidation of Ras, Rab, and several
other cellular signal transduction proteins,
facilitating membrane associations and specific
protein-protein interactions. Alpha (2)-M is a major
carrier protein in serum and involved in the
immobilization and entrapment of proteases. PZP is a
pregnancy associated protein. Alpha (2)-M and PZP are
known to bind to and, may modulate, the activity of
placental protein-14 in T-cell growth and cytokine
production thereby protecting the allogeneic fetus from
attack by the maternal immune system.
Length = 300
Score = 26.7 bits (59), Expect = 6.8
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 125 KQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDMRLISAALETAYE 170
+ WL + N + +E G + E D+RL + AL
Sbjct: 107 ARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALAL 152
>gnl|CDD|236165 PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 547
Score = 26.9 bits (60), Expect = 7.7
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 60 NWQKQAVTSVIIGLEVRRKEA--LSAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKQLH 117
++ + V+ I+ ++V + ++ A++ D+ N Q LD + K+L
Sbjct: 411 SFTLKPVSDAIVNMDVLITDESKIAMASEADGGDSDNRNG--------QALLDLQNKKLV 462
Query: 118 TNAITFSKQTQQWLSLVDNFNSALK 142
+F+ +S V N + LK
Sbjct: 463 GGKKSFNDAYASLVSDVGNQTATLK 487
>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional.
Length = 881
Score = 27.0 bits (60), Expect = 8.4
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 99 VAQAYLNQKKLDAEAKQLHTNAITFSK-QTQQWLSLVDNFNSALKEIGDVENWAKVIEED 157
+A+ L +KKLD +++ F K + ++ +N I DVE + +++
Sbjct: 278 IAEVELGKKKLD------YSDG-PFKKFRETDHQKYIE-YN-----IIDVELVDR-LDDK 323
Query: 158 MRLISAALETAYEGSINENT 177
+LI L AY IN
Sbjct: 324 RKLIELVLSMAYYAKINFED 343
>gnl|CDD|132306 TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter,
permease protein. [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 546
Score = 26.6 bits (59), Expect = 9.3
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 11/44 (25%)
Query: 39 TLTITDFPILKVMSMEY------CY-----QRNWQKQAVTSVII 71
TL ITDF + KV+ +Y Y Q+N+ AV V++
Sbjct: 199 TLVITDFGVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGVLL 242
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.127 0.349
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,131,846
Number of extensions: 826154
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 27
Length of query: 186
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 95
Effective length of database: 6,901,388
Effective search space: 655631860
Effective search space used: 655631860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)