RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13596
(186 letters)
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 47.8 bits (114), Expect = 4e-07
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDEHKEFSLKNTLTITD 44
G E G SYRF+++ + G DLQK+ ++ F L +
Sbjct: 117 GLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGI 158
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
acid sequence, binding sites, domain, models, molecular;
HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Length = 364
Score = 44.0 bits (104), Expect = 1e-05
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLDE-HKEFSLKNTLTITD 44
G + NG SYRF+I+ +FGSDLQK+ + K FS K L ++
Sbjct: 117 GLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSL 159
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 41.3 bits (97), Expect = 8e-05
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 8 NGNSYRFIIISKFGSDLQKLLDE--HKEFSLKNTLTITD 44
+ + YRF+++ G LQ LD S ++ L +
Sbjct: 128 HQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVAC 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.006
Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 20/154 (12%)
Query: 3 GQQEHNGNSYRFIIISKFGSDLQKLLD-EHKEFSLKNTLTITDFP-ILKVMSMEYCYQRN 60
G+ ++ Y+ I+S F D + + K+ L+ + I+
Sbjct: 12 GEHQY---QYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV------ 61
Query: 61 WQKQAVTSVIIGLEVRRKEALSAA-NDLTQA----LVDHLNVGVAQAYLNQKKLDAEAKQ 115
+ L +++E + ++ + L+ + Q + + + +
Sbjct: 62 ---SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 116 LHTNAITFSKQTQQWLSLVDNFNSALKEIGDVEN 149
L+ + F+K L AL E+ +N
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Score = 32.1 bits (72), Expect = 0.099
Identities = 26/190 (13%), Positives = 53/190 (27%), Gaps = 58/190 (30%)
Query: 24 LQKLLDEHKEFSLKNTLTITD----FPILKVMSMEYCYQRNWQKQAVT----SVIIGLEV 75
L++LL +N L + ++ C K +T V L
Sbjct: 234 LRRLLKSKP---YENCLLVLLNVQNAKAWNAFNLS-C------KILLTTRFKQVTDFLSA 283
Query: 76 RRKEALSAANDLTQALVDHLNVGVAQAYLNQK--KLDAEAKQLHTNAIT-FSKQTQQWLS 132
+S + + L + YL+ + L E + ++ ++ + L+
Sbjct: 284 ATTTHISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 133 LVDNF----NSALKEIGDV---------------------EN-----------WAKVIEE 156
DN+ L I + + W VI+
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 157 DMRLISAALE 166
D+ ++ L
Sbjct: 403 DVMVVVNKLH 412
Score = 28.7 bits (63), Expect = 1.4
Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 49/198 (24%)
Query: 22 SDLQKLLDEHKEFSL------KNTLTITDFPILKVMSMEYCYQRNWQKQAVTSVIIGLEV 75
SD+ ++++ ++SL ++T++I + +E + + A+ I+ +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPS------IYLELKVKLE-NEYALHRSIV--DH 452
Query: 76 RRKEALSAANDLTQALVD---------HL-NVGVAQA-------YLN----QKKLDAE-- 112
++DL +D HL N+ + +L+ ++K+ +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 113 ---AKQLHTNAITFSKQTQQWLSLVDNFNSALKEIGDVENWAKVIEEDM------RLISA 163
A N + K + ++ D L + + ++ IEE++ L+
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRI 570
Query: 164 ALETAYEGSINENTSAAA 181
AL E E
Sbjct: 571 ALMAEDEAIFEEAHKQVQ 588
Score = 28.3 bits (62), Expect = 1.9
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 33/141 (23%)
Query: 11 SYR-FIIISKFGSD-----LQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQ 64
+ R F + + ++++L + +F + T P + M+ Y QR+ +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM--MTRMYIEQRD-RLY 120
Query: 65 AVTSVIIGLEVRRKEALSAANDLTQALVDHLNVGV------------AQAYLNQKKLDAE 112
V V R + L NV + L+ K
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 113 AKQLHTNAITFSKQTQQWLSL 133
++ WL+L
Sbjct: 181 DFKIF------------WLNL 189
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 27.1 bits (61), Expect = 3.9
Identities = 6/51 (11%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
Query: 51 MSMEYCYQRNWQKQAVTSVIIGLEVRR----KEALSAAN-DLTQALVDHLN 96
M++ + ++ V S ++G K + + + +L++ ++ +
Sbjct: 291 MALAFVRRQ----PFVASTLLG--ATTMDQLKTNIESLHLELSEDVLAEIE 335
>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel,
lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP:
c.1.19.3 PDB: 1dio_A* 1egm_A* 1egv_A* 1iwb_A* 1uc4_A*
1uc5_A* 3auj_A* 1iwp_A* 1mmf_A*
Length = 554
Score = 26.4 bits (58), Expect = 6.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 86 DLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAI 121
++ +AL VAQ LN +K LHT+AI
Sbjct: 472 EVVKALAQGGFTDVAQDMLNIQKAKLTGDYLHTSAI 507
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Length = 320
Score = 25.9 bits (56), Expect = 9.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 19 KFGSDLQKLLDEHKEFSLKNTLTITDFP 46
L + +K+++ NT+ D
Sbjct: 230 VDVKPLGVIWALYKQYNSSNTIMFDDIR 257
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase,
structural repeat; HET: HEM; 1.45A {Escherichia coli}
SCOP: e.62.1.1 PDB: 1u9t_A
Length = 354
Score = 25.7 bits (56), Expect = 9.7
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 115 QLHTNAITFSKQTQQWLSLVD-NFNSALKEIGDVENWA 151
Q+ T + + WL++ + F L E E W
Sbjct: 263 QIFTGVVEKVVPMKGWLNIFNPTFTLHLLEESIAEAWV 300
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.127 0.349
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,703,106
Number of extensions: 149590
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 19
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.5 bits)