RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13596
         (186 letters)



>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated
           protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 124

 Score = 26.5 bits (58), Expect = 1.3
 Identities = 4/19 (21%), Positives = 10/19 (52%)

Query: 116 LHTNAITFSKQTQQWLSLV 134
              N++T  +Q   W+ ++
Sbjct: 15  RQPNSLTRRQQISTWIDII 33


>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
          GART {Human (Homo sapiens) [TaxId: 9606]}
          Length = 205

 Score = 26.4 bits (57), Expect = 1.8
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 15 IIISKFGSDLQKLLDEHKEFSLKN--TLTITDFPILKVMSMEYCYQRNWQKQ 64
          ++IS  GS+LQ L+D  +E +      + I++   +  +          +  
Sbjct: 5  VLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVI 56


>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase,
          GART {Escherichia coli [TaxId: 562]}
          Length = 209

 Score = 25.6 bits (55), Expect = 3.9
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 15 IIISKFGSDLQKLLDEHKEFSLKNT--LTITDFPILKVMSMEYCYQRNWQKQ 64
          ++IS  GS+LQ ++D  K   +K T     ++      +             
Sbjct: 5  VLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTL 56


>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 551

 Score = 25.5 bits (56), Expect = 4.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 86  DLTQALVDHLNVGVAQAYLNQKKLDAEAKQLHTNAI 121
           ++ +AL       VAQ  LN +K       LHT+AI
Sbjct: 472 EVVKALAQGGFTDVAQDMLNIQKAKLTGDYLHTSAI 507


>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
          N-acetyl-gamma-glutamyl-phosphate reductase ArgC
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 179

 Score = 24.2 bits (51), Expect = 8.8
 Identities = 5/44 (11%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 21 GSDLQKLLDEHKEFSLKNTLTITDFPILKVMSMEYCYQRNWQKQ 64
          G++L   ++ H   ++   LT++         +   + +     
Sbjct: 14 GAELVSYVNRHPHMTITA-LTVSAQSNDAGKLISDLHPQLKGIV 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 636,463
Number of extensions: 26388
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 12
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)