BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13598
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 66/93 (70%)
Query: 5 VQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
V++ T V+MRVGIH+G V GVLG R+WQFDV+S DV LAN ME G GR+HI++ T
Sbjct: 118 VREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKAT 177
Query: 65 LCYIDGNFEVEPAFGENREEALRQAGLKTFFIV 97
L Y++G++EVEP G R L++ ++TF I+
Sbjct: 178 LSYLNGDYEVEPGCGGERNAYLKEHSIETFLIL 210
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 66/93 (70%)
Query: 5 VQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
V++ T V+MRVGIH+G V GVLG R+WQFDV+S DV LAN ME G GR+HI++ T
Sbjct: 110 VREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKAT 169
Query: 65 LCYIDGNFEVEPAFGENREEALRQAGLKTFFIV 97
L Y++G++EVEP G R L++ ++TF I+
Sbjct: 170 LSYLNGDYEVEPGCGGERNAYLKEHSIETFLIL 202
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 66/93 (70%)
Query: 5 VQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
V++ T V+MRVGIH+G V GVLG R+WQFDV+S DV LAN ME G GR+HI++ T
Sbjct: 118 VREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKAT 177
Query: 65 LCYIDGNFEVEPAFGENREEALRQAGLKTFFIV 97
L Y++G++EVEP G R L++ ++TF I+
Sbjct: 178 LSYLNGDYEVEPGCGGERNAYLKEHSIETFLIL 210
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 5 VQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
V + PV +RVG+H+G V+AGV+G++ +F ++ V A++ME G G++HISE
Sbjct: 94 VASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEAC 153
Query: 65 LCYI 68
C +
Sbjct: 154 YCCL 157
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 5 VQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
V + PV +RVG+H+G V+AGV+G++ +F ++ V A++ME G G++HISE
Sbjct: 94 VASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEA- 152
Query: 65 LCY 67
CY
Sbjct: 153 -CY 154
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 37/53 (69%)
Query: 12 PVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
P+ MR+G+H+G+V AGV+G + ++ ++ +V LANK E +P ++++S T
Sbjct: 105 PIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTT 157
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 7 QTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
Q V + +GIHTG V+ GV+GQR ++ ++ V L ++ E +G G++++SE T
Sbjct: 105 QVDGESVQITIGIHTGEVVTGVIGQRMPRYSLFGNTVNLTSRTETTGEKGKINVSEYT 162
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 38/50 (76%)
Query: 15 MRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
+RVGI+ G V+AGV+G ++ Q+D++ V +A++M+ +G+ ++ ++E+T
Sbjct: 123 LRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEET 172
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 38/50 (76%)
Query: 15 MRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
+RVGI+ G V+AGV+G ++ Q+D++ V +A++M+ +G+ ++ ++E+T
Sbjct: 126 LRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEET 175
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 38/50 (76%)
Query: 15 MRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
+RVGI+ G V+AGV+G ++ Q+D++ V +A++M+ +G+ ++ ++E+T
Sbjct: 127 LRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEET 176
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 7 QTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
Q V + +GIHTG V+ GV+GQR ++ ++ V L ++ E +G G++++SE T
Sbjct: 104 QVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYT 161
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 43/68 (63%)
Query: 5 VQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT 64
++ +PV +RVG+ TG V+AGV+G R++++ V+ V +A++ME + G++ + ++
Sbjct: 94 LKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEV 153
Query: 65 LCYIDGNF 72
+ +F
Sbjct: 154 YERLKDDF 161
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 6 QQTTN---SPVDMRVGIHTGAVLAGVLG-QRQWQFDVYSKDVELANKMEQSGLPGRVHIS 61
QQ T P++M +GI+TG V+ G +G +++ ++ V V L ++E G++ IS
Sbjct: 100 QQVTGLGLQPLEMGIGINTGEVVVGNIGSEKRTKYGVVGAQVNLTYRIESYTTGGQIFIS 159
Query: 62 EKTL------CYIDGNFEVEP 76
TL +++GN V+P
Sbjct: 160 STTLEAAGDRVHVNGNRTVQP 180
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 7 QTTNSPVDMRVGIHTGAVLAGVLG-QRQWQFDVYSKDVELANKMEQSGLPGRVHISEKTL 65
Q P+++R+GI+TG G G + + + ++V LA+++E + G + IS +T
Sbjct: 102 QGITKPLEIRMGINTGYCTVGNFGADTRMDYTIIGREVNLASRLESASEAGEILISHETY 161
Query: 66 CYI 68
I
Sbjct: 162 SLI 164
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 38 VYSKDVELANKMEQSGLPGRVHISEKTLCYIDGNFEVEPAFGENREEALRQAGLKTFFIV 97
YS D + + +E++GL G V + DGNF + + + E + AGL FF+V
Sbjct: 185 AYSSD-QAHSSVERAGLIGGVKLKAIP---SDGNFAMRASALQEALERDKAAGLIPFFMV 240
Query: 98 NTIVPDNKNSFVIRVHISEKTLCYIDGNFEVEP 130
T + T C D EV P
Sbjct: 241 AT--------------LGTTTCCSFDNLLEVGP 259
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 38 VYSKDVELANKMEQSGLPGRVHISEKTLCYIDGNFEVEPAFGENREEALRQAGLKTFFIV 97
YS D + + +E++GL G V + DGNF + + + E + AGL FF+V
Sbjct: 185 AYSSD-QAHSSVERAGLIGGVKLKAIP---SDGNFAMRASALQEALERDKAAGLIPFFMV 240
Query: 98 NTIVPDNKNSFVIRVHISEKTLCYIDGNFEVEP 130
T + T C D EV P
Sbjct: 241 AT--------------LGTTTCCSFDNLLEVGP 259
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 89 AGLKTFFIVNTIVPDNKNSFVIRVHISEKTLCYIDGNFEVEPAFGENREEALRQAGLKTF 148
A L +V + PD+K +K +C I E +P F R+ A R K
Sbjct: 266 AVLSPVHVVEELFPDSKRY--------QKAMCLIASGIEQDPYFRLARDLAPRMGHPKNA 317
Query: 149 FIVNTIVP 156
+++ +P
Sbjct: 318 YLLGKFLP 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,854,920
Number of Sequences: 62578
Number of extensions: 203607
Number of successful extensions: 406
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 23
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)