RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13598
(163 letters)
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 138 bits (351), Expect = 4e-42
Identities = 48/96 (50%), Positives = 66/96 (68%)
Query: 2 CRYVQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHIS 61
V++ T V+MRVGIH+G V GVLG R+WQFDV+S DV LAN ME G GR+HI+
Sbjct: 115 ISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHIT 174
Query: 62 EKTLCYIDGNFEVEPAFGENREEALRQAGLKTFFIV 97
+ TL Y++G++EVEP G R L++ ++TF I+
Sbjct: 175 KATLSYLNGDYEVEPGCGGERNAYLKEHSIETFLIL 210
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 90.4 bits (225), Expect = 2e-23
Identities = 20/75 (26%), Positives = 44/75 (58%)
Query: 2 CRYVQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHIS 61
++ +PV +RVG+ TG V+AGV+G R++++ V+ V +A++ME + G++ +
Sbjct: 91 AAQLKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQVP 150
Query: 62 EKTLCYIDGNFEVEP 76
++ + +F +
Sbjct: 151 DEVYERLKDDFVLRE 165
Score = 26.8 bits (60), Expect = 3.2
Identities = 1/20 (5%), Positives = 9/20 (45%)
Query: 111 RVHISEKTLCYIDGNFEVEP 130
++ + ++ + +F +
Sbjct: 146 QIQVPDEVYERLKDDFVLRE 165
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 82.4 bits (204), Expect = 3e-20
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 2 CRYVQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHIS 61
V P+ MR+G+H+G+V AGV+G + ++ ++ +V LANK E +P ++++S
Sbjct: 95 SDEVMSPHGEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVS 154
Query: 62 EKTLCYID--GNFEVEP 76
T + F P
Sbjct: 155 PTTYRLLKDCPGFVFTP 171
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 75.4 bits (186), Expect = 7e-18
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MCRYVQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHI 60
V + PV +RVG+H+G V+AGV+G++ +F ++ V A++ME G G++HI
Sbjct: 90 EASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHI 149
Query: 61 SEKT--LCYIDGNFEVEP 76
SE FE+
Sbjct: 150 SEACYCCLRSKERFEIRE 167
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 75.9 bits (187), Expect = 8e-18
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 7 QTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKT-- 64
Q V + +GIHTG V+ GV+GQR ++ ++ V L ++ E +G G++++SE T
Sbjct: 104 QVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYR 163
Query: 65 ----LCYIDGNFEVEP 76
D F +E
Sbjct: 164 CLMSPENSDPQFHLEH 179
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 65.7 bits (161), Expect = 6e-14
Identities = 18/76 (23%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 2 CRYVQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHIS 61
+ + + + +RVGI+ G V+AGV+G ++ Q+D++ V +A++M+ +G+ ++ ++
Sbjct: 113 LDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVT 172
Query: 62 EKTLCYI-DGNFEVEP 76
E+T + +
Sbjct: 173 EETSLILQTLGYTCTC 188
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 58.5 bits (141), Expect = 7e-11
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 7 QTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKTLC 66
T N+ +R G+ +G ++ D + V +A+++ PG V +++
Sbjct: 289 DTDNNFPRLRAGVASGMAVSRA-------GDWFGSPVNVASRVTGVARPGAVLVADSVRE 341
Query: 67 YIDGNFEVEPAFGENREE 84
+ E +
Sbjct: 342 ALGDAPEADGFQWSFAGP 359
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 50.6 bits (121), Expect = 2e-08
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 12 PVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKTLCYID-- 69
+ +RVGIHTG + +D Y + +A + E G+V ++ +
Sbjct: 131 GLRVRVGIHTGLCDIRHDEVTK-GYDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAE 189
Query: 70 --GNFEVEP 76
+V
Sbjct: 190 DRKQIDVTA 198
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 44.6 bits (106), Expect = 2e-06
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 12 PVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISEKTLCYIDGN 71
+++R+GIH G V DV V + ++ P V +S + G+
Sbjct: 95 GIEVRIGIHAGEVEVRDASHGT---DVAGVAVHIGARVCALAGPSEVLVSSTVRDIVAGS 151
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 44.5 bits (106), Expect = 2e-06
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 12 PVDMRVGIHTGAVLAGVLG--QRQWQFDVYSKDVELANKMEQSGLPGRVHISEKTLCYID 69
P++M +GI+TG V+ G +G +R ++ V V L ++E G++ IS TL
Sbjct: 109 PLEMGIGINTGEVVVGNIGSEKRT-KYGVVGAQVNLTYRIESYTTGGQIFISSTTLEAAG 167
Query: 70 GNFEVEP 76
V
Sbjct: 168 DRVHVNG 174
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 42.9 bits (102), Expect = 8e-06
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 12 PVDMRVGIHTGAVLAGVLGQRQWQFD--VYSKDVELANKMEQSGLPGRVHISEKTLCYID 69
P+++R+GI+TG G G + D + ++V LA+++E + G + IS +T I
Sbjct: 107 PLEIRMGINTGYCTVGNFGADT-RMDYTIIGREVNLASRLESASEAGEILISHETYSLIK 165
Query: 70 GNFEVEP 76
Sbjct: 166 DVIMCRD 172
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 38.7 bits (91), Expect = 3e-04
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 12 PVDMRVGIHTGAVLAGVLG-QRQWQFDVYSKDVELANKMEQSGLPGRVHISEKTLCYIDG 70
PV R GIH G + G+ G Q + F V +A +++++ P + +S Y+
Sbjct: 130 PVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQYVPD 189
Query: 71 NFEVE 75
++
Sbjct: 190 EEIIK 194
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 36.9 bits (86), Expect = 0.001
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 3 RYVQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQSGLPGRVHISE 62
R + R+GI+ G ++ D++ V +A ++E PG + +S+
Sbjct: 84 REEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSD 136
Query: 63 KTLCYIDGNFEVE 75
Sbjct: 137 IVHQITQDRVSEP 149
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 29.5 bits (67), Expect = 0.48
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 131 AFGENREEALR--QAGLKTFFI---VNTIVPYSFAIL 162
++GENREEA+ LK I T V Y +L
Sbjct: 485 SWGENREEAISNMVVALKELSIRGDFRTTVEYLINLL 521
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 29.6 bits (67), Expect = 0.51
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 131 AFGENREEALR--QAGLKTFFI---VNTIVPYSFAIL 162
++GENREEA+ LK I T V Y +L
Sbjct: 501 SWGENREEAISNMVVALKELSIRGDFRTTVEYLINLL 537
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.52
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 28/114 (24%)
Query: 72 FEVEPAFGENREEALRQAGLKTFFIVNTIVPDNKNSFVIRVH--------ISEK--TLCY 121
++ A + A F + IV +N + + +H I E + +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN--LTIHFGGEKGKRIRENYSAMIF 1693
Query: 122 ---IDGNFEVEPAFGENREEALR-----QAGL--KTFFIVNT---IVPYSFAIL 162
+DG + E F E E + + GL T T + A
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT---QFTQPALTLMEKAAF 1744
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 28.8 bits (65), Expect = 0.81
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 131 AFGENREEALR--QAGLKTFFI---VNTIVPYSFAIL 162
AFGENR+ + + LK I T V Y +L
Sbjct: 499 AFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLL 535
>1vjq_A Designed protein; structural genomics, engineered protein, PSI,
protein struct initiative, structural genomics of
pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Length = 79
Score = 25.9 bits (57), Expect = 2.6
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 8 TTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMEQ 51
PV + + +L + F VY ++ NK Q
Sbjct: 36 EPGQPVVILIPSDMVEWFLEMLKAKGIPFTVYVEEGGSENKYFQ 79
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X
3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 1s1i_T 3jyw_T
Length = 142
Score = 26.3 bits (58), Expect = 3.1
Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 40 SKDVELANKMEQSGLPGRVHISEKTLCYIDGN----FEVEPAFGENREEALRQAGLKTFF 95
SK V N+++ + + SE + ++ F+V + + +++A + +
Sbjct: 48 SKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSM---KANKYQIKKAVKELYE 104
Query: 96 I----VNT-IVPDNK 105
+ VNT + P+
Sbjct: 105 VDVLKVNTLVRPNGT 119
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 5.5
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 17/69 (24%)
Query: 32 RQWQ--FD--VYSKDVELANKMEQSGLPGRVHIS----------EKTLCYIDGNFEVEPA 77
R+W+ + D ++ + + EK N + A
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN---KINNRIADKA 144
Query: 78 FGENREEAL 86
F + + +
Sbjct: 145 FYQQPDADI 153
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 25.6 bits (56), Expect = 6.4
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 12/68 (17%)
Query: 47 NKMEQSGLPGRVHISEKTLCYIDGN----FEVEPAFGENREEALRQAGLKTFFI----VN 98
++ + +EK + ++ F V + + ++ A K + + VN
Sbjct: 63 GHLDNHSVVKTPLTTEKAMKKMEDENTMVFYVHN---RSTKPQIKSAFEKLYNVKVRSVN 119
Query: 99 T-IVPDNK 105
T
Sbjct: 120 TLNTITGN 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.414
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,488,807
Number of extensions: 142996
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 30
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)