RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13599
(120 letters)
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 74.6 bits (184), Expect = 2e-18
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 47 LHRKLS--GKVLVHCLMGISRSSTCILAYLILKKKFRLTEALRLLRQSR-DVRPNYGFLR 103
+ GKVLVHCL G+SRS+T ++AYL+ L EA ++ R + PN GF+R
Sbjct: 74 IDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMR 133
Query: 104 QLAYLD 109
QL +
Sbjct: 134 QLKEYE 139
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 72.7 bits (179), Expect = 1e-17
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 53 GKVLVHCLMGISRSSTCILAYLILKKKFRLTEALRLLRQSRD-VRPNYGFLRQL 105
GKVLVHC GISRS+T I+AYL+ + L EA +++ R + PN+GF RQL
Sbjct: 72 GKVLVHCQAGISRSATLIIAYLMKTRNLSLNEAYSFVKERRPIISPNFGFKRQL 125
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 68.5 bits (168), Expect = 5e-16
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 53 GKVLVHCLMGISRSSTCILAYLILKKKFRLTEALRLLRQSRD-VRPNYGFLRQL 105
GKVLVHC G+SRS+T I+AYL+ + L +A ++ R + PN+GFLRQL
Sbjct: 79 GKVLVHCQAGVSRSATLIIAYLMKTRNMSLNDAYDFVKDRRPIISPNFGFLRQL 132
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 55.9 bits (135), Expect = 8e-11
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 38 CPPPEEIYSL------HRKLSGKVLVHCLMGISRSSTCILAYLILKKKFRLTEALRLLRQ 91
P E++ + KV+VHC GI RS T I AYL+L L + +++
Sbjct: 85 VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKR 144
Query: 92 SRDVRPNYGFLRQLAYLDNQLNR 114
R ++ L L+ +L R
Sbjct: 145 RRRPGAVVTEIQHLFELEQELFR 167
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 44.2 bits (105), Expect = 3e-06
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 29 VPTILNHRLCPPPEEIYS----LHRKLSGK--VLVHCLMGISRSSTCILAYLILKKKFRL 82
+P IL+H + P ++ +HR++ V+VHC +G RS + AYL+ K
Sbjct: 148 IP-ILDHSV-PTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLT 205
Query: 83 TEALRLLRQSRDVR----PNYGFLRQLAYL 108
E +L+Q + +R N RQL L
Sbjct: 206 VE--EVLQQIKQIRKTARLNK---RQLRAL 230
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 35.7 bits (83), Expect = 0.002
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
Query: 15 DFGGQDTTKRITELVPTILNHRLCPPPEEIYSLHRKLSGKVLVHCLMGISRSSTCILAYL 74
D G ++ + I +L+ + +G ++VHC G+ R+ T I +
Sbjct: 169 DHGVPESPESILDLI------------RAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDI 216
Query: 75 IL-----KKKFRLTEALRLLRQSR 93
+L K+ + E ++ LR R
Sbjct: 217 LLQQLEAGKEVDIFEIVKELRSQR 240
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 35.2 bits (81), Expect = 0.003
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 55 VLVHCLMGISRSSTCIL-AYLILKKKFRLTE-ALRLLRQSRDVRPNYGFLRQLAYLDNQL 112
+L+HC GISRS+ L A L L TE A RL S PN R +A D L
Sbjct: 96 LLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPN---PRLIAIADAAL 152
Query: 113 NR 114
R
Sbjct: 153 GR 154
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 33.9 bits (78), Expect = 0.005
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 48 HRKLSGKVLVHCLMGISRSSTCILAYLIL------KKKFRLTEALRLLRQSR 93
+ SG V+VHC G+ R+ T + ++L + + + ++ LR R
Sbjct: 35 QSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDIFDTVKELRSQR 86
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 33.9 bits (78), Expect = 0.005
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 48 HRKLSGKVLVHCLMGISRSSTCILAYLIL------KKKFRLTEALRLLRQSR 93
+ SG V+VHC G+ R+ T + ++L + + + ++ LR R
Sbjct: 35 QSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDIFDTVKELRSQR 86
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 34.6 bits (80), Expect = 0.006
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 52 SGKVLVHCLMGISRSSTCILAYLIL-----KKKFRLTEALRLLRQSR 93
SG ++VHC G+ R+ T I ++L + + + + ++ LR R
Sbjct: 168 SGPIVVHCSAGVGRTGTFIAIDILLQQLEAEGEVDVFQIVKELRSQR 214
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 32.2 bits (74), Expect = 0.040
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 52 SGKVLVHCLMGISRSSTCILAYLIL-----KKKFRLTEALRLLRQSR 93
SG ++VHC G+ R+ T I ++L + + + ++ LR R
Sbjct: 166 SGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQR 212
>gnl|CDD|236000 PRK07360, PRK07360, FO synthase subunit 2; Reviewed.
Length = 371
Score = 26.4 bits (59), Expect = 3.9
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 19 QDTTKRITELVPTILNHRLCPPPEE 43
Q T ITE VP H P E
Sbjct: 243 QQETGGITEFVPLPFVHENAPLYER 267
>gnl|CDD|233344 TIGR01290, nifB, nitrogenase cofactor biosynthesis protein NifB.
This model describes NifB, a protein required for the
biosynthesis of the iron-molybdenum (or iron-vanadium)
cofactor used by the nitrogen-fixing enzyme nitrogenase.
NifB belongs to the radical SAM family, and the FeMo
cluster biosynthesis process requires
S-adenosylmethionine. Archaeal homologs lack the most
C-terminal region and score between the trusted and
noise cutoffs of this model [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other, Central
intermediary metabolism, Nitrogen fixation].
Length = 442
Score = 26.0 bits (57), Expect = 6.8
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 33 LNHRLCPPPEEIYSLHRKLSG--KVLVHC 59
LN + P P+E+ +L +L + HC
Sbjct: 237 LNGQREPDPDELAALRDRLEMGTPQMRHC 265
>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane
subunit; Provisional.
Length = 987
Score = 26.0 bits (57), Expect = 6.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 88 LLRQSRDVRPNYGFLRQLAYLDNQLNRSAASQ 119
L R + + + +RQLAY++ +L+ AA+Q
Sbjct: 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697
>gnl|CDD|193227 pfam12751, Vac7, Vacuolar segregation subunit 7. Vac7 is localised
at the vacuole membrane, a location which is consistent
with its involvement in vacuole morphology and
inheritance. Vac7 has been shown to function as an
upstream regulator of the Fab1 lipid kinase pathway. The
Fab1 lipid kinase pathway is important for correct
regulation of membrane trafficking events.
Length = 386
Score = 25.6 bits (56), Expect = 7.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 82 LTEALRLLRQSRDVRPNYGFLRQLAYLDNQ 111
L ++R R RPN LRQ+ Y+ +
Sbjct: 264 LVGSVRSSRSRHGRRPNSASLRQMEYMQQR 293
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 25.8 bits (56), Expect = 8.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 23 KRITELVPTILNHRLCPPPEEIYSL 47
K +T L P+ + ++ PPE YS+
Sbjct: 316 KELTALAPSTMKIKIIAPPERKYSV 340
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.402
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,177,163
Number of extensions: 546202
Number of successful extensions: 645
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 25
Length of query: 120
Length of database: 10,937,602
Length adjustment: 83
Effective length of query: 37
Effective length of database: 7,256,220
Effective search space: 268480140
Effective search space used: 268480140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)