BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13600
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 123 NKSHEAQLVILNLPGPPKETNIERESNYM 151
K+ EA+ VI+ G PK T I+ ES Y
Sbjct: 98 GKTFEAKSVIIATGGSPKRTGIKGESEYW 126
>pdb|3D9W|A Chain A, Crystal Structure Analysis Of Nocardia Farcinica Arylamine
N-Acetyltransferase
pdb|3D9W|B Chain B, Crystal Structure Analysis Of Nocardia Farcinica Arylamine
N-Acetyltransferase
pdb|3D9W|C Chain C, Crystal Structure Analysis Of Nocardia Farcinica Arylamine
N-Acetyltransferase
pdb|3D9W|D Chain D, Crystal Structure Analysis Of Nocardia Farcinica Arylamine
N-Acetyltransferase
Length = 293
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 49 YVFQNQPLKITKLDVGDHTENDQTDAEKTVNEVMKDIVTNKTSILDEDTKSSLTPDEGNV 108
Y F P +VG+H + + T ++ +++ +LD T + PD
Sbjct: 191 YTFTTAPQYRIDFEVGNHFVSTSPRSPFTTRPFLQRFHSDRHHVLDGLTLITERPDGSAD 250
Query: 109 RRMHTAVKLNEVIVNKSHEAQLVILNLPGP 138
R T +L EVI +L + LPGP
Sbjct: 251 IRALTPGELPEVI------NELFDIELPGP 274
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 58 ITKLDVGDHTENDQTDAEKTVNEVMKDIVTNKTSILDEDTKSSLTPDE 105
I++ D G+ D E+T+ E+MKDI+ N + E +S + E
Sbjct: 388 ISRRDTGEKVTADLQGIEETLRELMKDILENLRTRAWERMESEIREAE 435
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 107 NVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLERVLM 166
NV+ + +++ + E++L+IL GP NI R Y + L + L +VL
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLS 347
Query: 167 VRGSN 171
V SN
Sbjct: 348 VCSSN 352
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 95 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWT-TSRVLK 153
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 154 VLSVCSSN 161
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 157 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 215
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 216 VLSVCSSN 223
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 154 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 212
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 213 VLSVCSSN 220
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 156 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 214
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 215 VLSVCSSN 222
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L + L +
Sbjct: 151 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL-K 209
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 210 VLSVCSSN 217
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 155 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 213
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 214 VLSVCSSN 221
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 138 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 196
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 197 VLSVCSSN 204
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 151 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 209
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 210 VLSVCSSN 217
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 155 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 213
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 214 VLSVCSSN 221
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 211
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 212 VLSVCSSN 219
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 138 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 196
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 197 VLSVCSSN 204
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 140 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 198
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 199 VLSVCSSN 206
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L T + +
Sbjct: 142 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLK 200
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 201 VLSVCSSN 208
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 26.9 bits (58), Expect = 6.6, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 104 DEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLER 163
++ NV+ + +++ + E++L+IL GP NI R Y + L + L +
Sbjct: 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL-K 208
Query: 164 VLMVRGSN 171
VL V SN
Sbjct: 209 VLSVCSSN 216
>pdb|1NT2|B Chain B, Crystal Structure Of FibrillarinNOP5P COMPLEX
Length = 258
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 26 VHCLDNIDSPLHLVDGTLIDGVDYVFQNQPLKITKLDVGDHTENDQTDAEKTVNEVMKDI 85
V L+ ID +++++ L D + V +++ + + + + E + D E+ + EVM+ I
Sbjct: 81 VKALEEIDESINMLNEKLED-IRAVKESEITEKFEKKIRELREL-RRDVEREIEEVMEKI 138
Query: 86 VTNKTSILDEDTKSSLTPDEGNVRRM 111
N T ++ + L G++ R+
Sbjct: 139 APNMTELVGAKVAAKLLERAGSMERL 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,488,717
Number of Sequences: 62578
Number of extensions: 214135
Number of successful extensions: 768
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 26
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)