Query psy13600
Match_columns 186
No_of_seqs 175 out of 307
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 23:23:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g40_A Na-K-CL cotransporter; 37.6 13 0.00045 32.6 1.7 46 118-173 236-281 (294)
2 1ymm_C MBP peptide, HLA class 34.3 12 0.00042 21.9 0.7 14 25-38 4-17 (26)
3 1yzs_A Sulfiredoxin; PARB doma 29.0 66 0.0022 24.6 4.2 36 146-183 42-82 (121)
4 2yvt_A Hypothetical protein AQ 27.9 50 0.0017 25.4 3.5 27 148-174 76-102 (260)
5 1uf3_A Hypothetical protein TT 25.2 66 0.0022 23.9 3.6 44 127-173 32-75 (228)
6 1iv0_A Hypothetical protein; r 25.0 1.6E+02 0.0055 21.0 5.6 52 114-167 40-91 (98)
7 2lug_A Myelin basic protein; i 19.7 38 0.0013 21.1 1.0 16 24-39 11-26 (36)
8 3aq2_A 6B protein; miRNA machi 19.3 27 0.00091 29.3 0.3 28 109-136 72-99 (207)
9 3u0v_A Lysophospholipase-like 19.2 2.1E+02 0.007 20.8 5.3 45 126-177 142-186 (239)
10 1nu0_A Hypothetical protein YQ 18.1 1.3E+02 0.0043 22.9 3.9 56 114-173 42-102 (138)
No 1
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=37.62 E-value=13 Score=32.61 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=31.9
Q ss_pred HHHHHhcCCCccEEeecCCCCCCCCCCCchhhHHHHHHHHhcCCCceEEEcCCCce
Q psy13600 118 NEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLERVLMVRGSNSS 173 (186)
Q Consensus 118 NELIre~S~dAaLIvlnLP~Prk~~~~~~~~lYMawLe~LT~gLpPvLLVRGng~e 173 (186)
-++|.+ |++|+|+|+.||.- ..-..|.-+-.+|. .-.||||++|.|
T Consensus 236 ~~il~~-s~~ADL~flGl~~~-------~df~~~~~~~~~~~--ssc~f~~dsg~e 281 (294)
T 3g40_A 236 PIKSSK-LPFASLHIFSLDPN-------PDLDLARHLMEKAG--SSCIFALDSGEE 281 (294)
T ss_dssp TTTSSS-CCCCSEEEEECCSS-------CCHHHHHHHHHHHT--SEEEEEECCSCC
T ss_pred HHHHhh-CcCCCEEEEcCCCC-------CcHHHHHHHHHhcC--CeEEEEecCchh
Confidence 345555 68899999999743 33445555555553 467999999987
No 2
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=34.29 E-value=12 Score=21.95 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=11.7
Q ss_pred hHHHHHhhccCccc
Q psy13600 25 TVHCLDNIDSPLHL 38 (186)
Q Consensus 25 ~~~~~~~~~~p~~~ 38 (186)
-+|+|.||++|-.-
T Consensus 4 vVHFFKNivspr~p 17 (26)
T 1ymm_C 4 VVHFFKNIVTPRGG 17 (26)
T ss_pred hhhhhhhccCCCCC
Confidence 48999999999654
No 3
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=28.95 E-value=66 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=22.2
Q ss_pred chhhHHHHHHHHhcC---CCceEE--EcCCCceeeeEeeeeec
Q psy13600 146 RESNYMEFLEVLTEG---LERVLM--VRGSNSSHHCYRYLFCG 183 (186)
Q Consensus 146 ~~~lYMawLe~LT~g---LpPvLL--VRGng~eVLTf~~~~~~ 183 (186)
.....-+-.+.+.+. ++|+-. ++|..- -.+||+|||
T Consensus 42 d~~kv~eL~eSI~~~Gl~~~PI~V~~~~g~~g--g~~Y~l~~G 82 (121)
T 1yzs_A 42 DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQG--GDYFYSFGG 82 (121)
T ss_dssp CHHHHHHHHHHHHHCGGGSCCEEEEEEECTTS--CEEEECCSC
T ss_pred CHHHHHHHHHHHHhcCCCCCCeEEEEeccCCC--CceEEEEec
Confidence 455666666666654 477643 344322 268999999
No 4
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=27.91 E-value=50 Score=25.42 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=20.3
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCcee
Q psy13600 148 SNYMEFLEVLTEGLERVLMVRGSNSSH 174 (186)
Q Consensus 148 ~lYMawLe~LT~gLpPvLLVRGng~eV 174 (186)
..|.+|++.|.+--.|++.|.||+..-
T Consensus 76 ~~~~~~l~~l~~~~~pv~~v~GNHD~~ 102 (260)
T 2yvt_A 76 ETLDKFFREIGELGVKTFVVPGKNDAP 102 (260)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSCC
T ss_pred HHHHHHHHHHHhcCCcEEEEcCCCCch
Confidence 347788888876335899999998753
No 5
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=25.24 E-value=66 Score=23.86 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=27.1
Q ss_pred CccEEeecCCCCCCCCCCCchhhHHHHHHHHhcCCCceEEEcCCCce
Q psy13600 127 EAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLERVLMVRGSNSS 173 (186)
Q Consensus 127 dAaLIvlnLP~Prk~~~~~~~~lYMawLe~LT~gLpPvLLVRGng~e 173 (186)
++++|+++==.-..+ .+...|.++++.|.+--.|++.|.||+..
T Consensus 32 ~~D~vi~~GDl~~~~---~~~~~~~~~~~~l~~~~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKA---AKSRDYAAFFRILSEAHLPTAYVPGPQDA 75 (228)
T ss_dssp TCSEEEEESCSSCTT---CCHHHHHHHHHHHGGGCSCEEEECCTTSC
T ss_pred CCCEEEECCCCCCCC---CCHHHHHHHHHHHHhcCCcEEEECCCCCc
Confidence 566777641111111 13456777888887532489999999975
No 6
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=24.95 E-value=1.6e+02 Score=20.98 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCccEEeecCCCCCCCCCCCchhhHHHHHHHHhcCCCceEEE
Q psy13600 114 AVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLERVLMV 167 (186)
Q Consensus 114 ~lrLNELIre~S~dAaLIvlnLP~Prk~~~~~~~~lYMawLe~LT~gLpPvLLV 167 (186)
.-+|.+++.++ ++..||+-||.--.|+.-.....-.+|.+.|.+.--||.++
T Consensus 40 ~~~l~~li~e~--~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~ 91 (98)
T 1iv0_A 40 VEALLDFVRRE--GLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELW 91 (98)
T ss_dssp HHHHHHHHHHH--TCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHc--CCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 45899999998 57889999997766552111333334444443321366665
No 7
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=19.71 E-value=38 Score=21.10 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=12.8
Q ss_pred hhHHHHHhhccCcccc
Q psy13600 24 ETVHCLDNIDSPLHLV 39 (186)
Q Consensus 24 ~~~~~~~~~~~p~~~~ 39 (186)
.-+|+|.||++|-.-.
T Consensus 11 pvvhffknivsprtpp 26 (36)
T 2lug_A 11 PVVHFFKNIVTPRTPP 26 (36)
T ss_dssp HHHHHHHHHHCSSCCC
T ss_pred chhHhhhhccCCCCCC
Confidence 4689999999997643
No 8
>3aq2_A 6B protein; miRNA machineries, toxin, ADP-ribosylation fold; 1.65A {Agrobacterium vitis} PDB: 3aq3_A
Probab=19.25 E-value=27 Score=29.29 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHHhcCCCccEEeecCC
Q psy13600 109 RRMHTAVKLNEVIVNKSHEAQLVILNLP 136 (186)
Q Consensus 109 ~K~hr~lrLNELIre~S~dAaLIvlnLP 136 (186)
+.+.++.++|.++-.+|++..+++.+||
T Consensus 72 e~~A~~C~~~R~LpsNSsN~g~~aTalP 99 (207)
T 3aq2_A 72 EVTAQLCGLNRLLPSNSPAFGTVATAMP 99 (207)
T ss_dssp HHHHHHHHHHTEEECCBTTTBEEEESSC
T ss_pred cHHHHHHHHhcccccCCCCcceeeeccC
Confidence 5677889999999999999999999999
No 9
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens}
Probab=19.24 E-value=2.1e+02 Score=20.80 Aligned_cols=45 Identities=11% Similarity=-0.011 Sum_probs=27.5
Q ss_pred CCccEEeecCCCCCCCCCCCchhhHHHHHHHHhcCCCceEEEcCCCceeeeE
Q psy13600 126 HEAQLVILNLPGPPKETNIERESNYMEFLEVLTEGLERVLMVRGSNSSHHCY 177 (186)
Q Consensus 126 ~dAaLIvlnLP~Prk~~~~~~~~lYMawLe~LT~gLpPvLLVRGng~eVLTf 177 (186)
.=+.+|+++=..+... .....+......+||+|+++|....++..
T Consensus 142 ~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~pp~li~~G~~D~~v~~ 186 (239)
T 3u0v_A 142 DVAGVFALSSFLNKAS-------AVYQALQKSNGVLPELFQCHGTADELVLH 186 (239)
T ss_dssp TSSEEEEESCCCCTTC-------HHHHHHHHCCSCCCCEEEEEETTCSSSCH
T ss_pred ccceEEEecCCCCchh-------HHHHHHHhhccCCCCEEEEeeCCCCccCH
Confidence 4455666653332221 23344455666778899999999887643
No 10
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=18.08 E-value=1.3e+02 Score=22.91 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCccEEeecCCCCCCCCCCCc--hhhHHHHHHHHhcCC-CceEEE--cCCCce
Q psy13600 114 AVKLNEVIVNKSHEAQLVILNLPGPPKETNIER--ESNYMEFLEVLTEGL-ERVLMV--RGSNSS 173 (186)
Q Consensus 114 ~lrLNELIre~S~dAaLIvlnLP~Prk~~~~~~--~~lYMawLe~LT~gL-pPvLLV--RGng~e 173 (186)
.-+|.+++.++ +...||+-||.-..|+ .+ ...-.+|.+.|.+.+ -||.+| |.+..+
T Consensus 42 ~~~l~~li~e~--~v~~iVvGlP~~mdGt--~~~~~~~~~~f~~~L~~~~~lpV~~~DERlTT~~ 102 (138)
T 1nu0_A 42 WNIIERLLKEW--QPDEIIVGLPLNMDGT--EQPLTARARKFANRIHGRFGVEVKLHDERLSTVE 102 (138)
T ss_dssp HHHHHHHHHHH--CCSEEEEEEEECTTSC--BCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHHc--CCCEEEEecccCCCcC--cCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHH
Confidence 46889999997 5788999999877776 34 333344555554333 478888 555444
Done!