RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13600
         (186 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.0 bits (82), Expect = 0.005
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 36/151 (23%)

Query: 5   DFRQRFDA--VPTHSRRPPSTETVHCLDNIDSPLHLVDGTLIDGVDYVF---QNQPLKIT 59
            F   FD   V    +   S E +   D+I     ++    + G   +F    ++  ++ 
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEI---DHI-----IMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 60  KLDVGD-------------HTENDQTDAEKTVNEVMKDIVTNKTSILDEDTKSSLTPDEG 106
           +  V +              TE  Q      +    +D + N   +  +           
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---------- 129

Query: 107 NVRRMHTAVKLNEVIVNKSHEAQLVILNLPG 137
           NV R+   +KL + ++       ++I  + G
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160



 Score = 34.1 bits (77), Expect = 0.022
 Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 61/201 (30%)

Query: 2   STSDFRQRFDAVPTHSRR-PPSTETVHCLDNIDSPLHLVDGTLIDGVDYVFQNQPLKITK 60
            +S+ + R  ++    RR   S    +CL  +    ++ +    +  +     + L  T+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKAWNAFN--LSCKILLTTR 273

Query: 61  LDVGDHTENDQTDAEKTVNEVMKDIVTNKTSILDEDTKSSLTPDEGNVRRMHTAVKLNEV 120
                    D   A  T +  +            +    +LTPDE           L   
Sbjct: 274 ----FKQVTDFLSAATTTHISL------------DHHSMTLTPDE--------VKSLLLK 309

Query: 121 IVNKS-----HEAQ----LVI----LNLPGPP------KETNIERESNYME-FLEVLTEG 160
            ++        E        +     ++          K  N ++ +  +E  L VL   
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 161 LERVLMVRGSNSSHHCYRYLF 181
             R             +  L 
Sbjct: 370 EYR-----------KMFDRLS 379



 Score = 31.7 bits (71), Expect = 0.15
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 27/140 (19%)

Query: 8   QRFDAVPTH-SRRPPSTETVHCLDNIDSPLHL-VDG-------TLIDGV--DYVFQNQ-P 55
           Q F     + SR  P  +    L  +    ++ +DG        +   V   Y  Q +  
Sbjct: 124 QVFA--KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 56  LKITKLDVGDHTENDQTDAE--KTVNEVMKDIVTNKTSILDEDTKSSLTPDEGNVRRMHT 113
            KI  L++     N  +     + + +++  I  N TS  D  +   L            
Sbjct: 182 FKIFWLNLK----NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---- 233

Query: 114 AVKLNEVIVNKSHEAQLVIL 133
              L  ++ +K +E  L++L
Sbjct: 234 ---LRRLLKSKPYENCLLVL 250


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.9 bits (72), Expect = 0.13
 Identities = 35/199 (17%), Positives = 60/199 (30%), Gaps = 76/199 (38%)

Query: 5    DFRQRFDAVPTHSRRPPSTETVHCLDNIDSPLHLVD--G-TLIDGVDYVFQNQPLKITKL 61
            D  +   A     +       V   +  D+  H  D  G +++D    +  N P+ +T  
Sbjct: 1634 DLYKTSKAA----QD------V--WNRADN--HFKDTYGFSILD----IVINNPVNLTIH 1675

Query: 62   DVGDH----TEN-------DQTDAEKTVNEVMKDIVTNKTSILDEDTKSSLTPDEGNVRR 110
              G+      EN          D +    ++ K+I  + TS      K  L+        
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-------- 1727

Query: 111  MHT-----AVKLNEVIVNKSHEAQLVILNLPGPPKETNIERESNYM------EF--L--- 154
              T     A+ L E        A    L      K   +             E+  L   
Sbjct: 1728 -ATQFTQPALTLMEK-------AAFEDL------KSKGLIPADATFAGHSLGEYAALASL 1773

Query: 155  -EVLTEGLE---RVLMVRG 169
             +V++  +E    V+  RG
Sbjct: 1774 ADVMS--IESLVEVVFYRG 1790



 Score = 30.4 bits (68), Expect = 0.36
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 43/142 (30%)

Query: 2   STSDF------RQRFDAVPTHSRRPPSTETVHCLDNIDSPLHLVD---GTLIDGVDYVFQ 52
            T+ F      +++F+ +      P  TE     D   +P  LV    G +   V+    
Sbjct: 23  PTASFFIASQLQEQFNKI-----LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77

Query: 53  NQPLKITKL-------------DVGDHT-----ENDQTDAEKTVNEVMK-----DIVTNK 89
            Q  ++  L             D+  H        +         E++K      I+  +
Sbjct: 78  GQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135

Query: 90  TSILDEDTKSSLTP--DEGNVR 109
               D+ + S+L     EGN +
Sbjct: 136 P--FDKKSNSALFRAVGEGNAQ 155


>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A
           {Homo sapiens} SCOP: a.26.1.1
          Length = 187

 Score = 25.8 bits (56), Expect = 8.1
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 93  LDEDTKSSLTPDEGNVRRMHTAVKLNEVIVNKSH-----EAQLVILNLPGPPKET 142
           L ED +   TP EG+  +      ++ +++  +      E  +++L    P  E 
Sbjct: 90  LLEDQQVHFTPTEGDFHQ-----AIHTLLLQVAAFAYQIEELMILLEYKIPRNEA 139


>4dna_A Probable glutathione reductase; structural genomics, protein
           structure initiative, NEW YORK structural genomix
           research consortium; HET: FAD; 2.80A {Sinorhizobium
           meliloti}
          Length = 463

 Score = 25.9 bits (58), Expect = 8.5
 Identities = 5/38 (13%), Positives = 13/38 (34%)

Query: 45  DGVDYVFQNQPLKITKLDVGDHTENDQTDAEKTVNEVM 82
            G+  + ++    ++    G          E   ++VM
Sbjct: 224 KGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVM 261


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0837    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,740,173
Number of extensions: 149275
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 11
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.4 bits)