RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13600
         (186 letters)



>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 99

 Score = 27.0 bits (60), Expect = 0.56
 Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 62  DVGDHTENDQTDAEKTVNEVMKDIVTNKTSILDEDTKSSLTPDEGNVRRM--HTAVKLNE 119
           D+ + T  +     K V             +++    + ++P +   R    + A+ +N 
Sbjct: 6   DIANLTAAEIEQGFKDVPSF--VHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNG 63

Query: 120 VIVN 123
             + 
Sbjct: 64  ERLQ 67


>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 73

 Score = 26.6 bits (59), Expect = 0.59
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 70  DQTDAEKTVNEVMKDIVTNKTSILDEDTKSSLTPDE 105
           D   AE  V    + + ++K  IL E+ +  L PD+
Sbjct: 3   DTDTAE-QVIASFRILASDKPYILAEELRRELPPDQ 37


>d2r7ca1 d.13.2.1 (A:144-313) Rotavirus NSP2 fragment, C-terminal
          domain {Simian 11 rotavirus [TaxId: 10923]}
          Length = 170

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 42 TLIDGVDYVFQNQPLKITKLDVGDH 66
             +G + VFQN    + KL   +H
Sbjct: 7  ITAEGGEIVFQNAAFTMWKLTYLEH 31


>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
           MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 253

 Score = 25.6 bits (56), Expect = 3.6
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 86  VTNKTSILDEDTKSSLTPDEGNVRRMHTAVKLNEVIVNKSHEAQLVILNLPGPPKETNIE 145
           +     ++D       T     +R     V  N  + N +    +         +E   E
Sbjct: 67  IDEGHILMDGHDLREYTLAS--LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 124

Query: 146 --RESNYMEFLEVLTEGLERVLMVRGSNSS 173
             R +  M+F+  +  GL+ ++   G   S
Sbjct: 125 AARMAYAMDFINKMDNGLDTIIGENGVLLS 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 654,632
Number of extensions: 27486
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 8
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)