BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13602
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 61/79 (77%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADI GFT+++S +A ELV LNELFARFD+L+ + LRIKILGDCYYC+SG P+
Sbjct: 37 ILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEA 96
Query: 88 RPDHAILSVHMGLSMVKAI 106
R DHA V MG+ M++AI
Sbjct: 97 RADHAHCCVEMGMDMIEAI 115
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 61/79 (77%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADI GFT+++S +A ELV LNELFARFD+L+ + LRIKILGDCYYC+SG P+
Sbjct: 37 ILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEA 96
Query: 88 RPDHAILSVHMGLSMVKAI 106
R DHA V MG+ M++AI
Sbjct: 97 RADHAHCCVEMGMDMIEAI 115
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 61/79 (77%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADI GFT+++S +A ELV LNELFARFD+L+ + LRIKILGDCYYC+SG P+
Sbjct: 29 ILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEA 88
Query: 88 RPDHAILSVHMGLSMVKAI 106
R DHA V MG+ M++AI
Sbjct: 89 RADHAHCCVEMGMDMIEAI 107
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+L+ADIVGFT +S+ + ++LV+ L+ L++ FD L +++ +I++ GD Y +SG P+
Sbjct: 13 VLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRP 72
Query: 88 RPDHAILSVHMGLSM 102
RPDH L M
Sbjct: 73 RPDHTQALADFALDM 87
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+L++DIVGFTAI S S +++ +LN L+ RFD+ + +++ +GD Y G KE
Sbjct: 17 MLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKE 76
Query: 88 RPDHAILSVHMGLSMVK 104
HA+ M L M++
Sbjct: 77 SDTHAVQIALMALKMME 93
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 18 SCPCSQNTW-RILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQL-RIKILG 75
S P ++ +L++DIVGFT I+S S E+ +L+EL+ RFD E+Y QL +++ +G
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIG 60
Query: 76 DCYYCISGAPKERPDHAILSVHMGLSM 102
D Y + DHA + + L M
Sbjct: 61 DAYMVVCNVTVPCDDHADVLLEFALRM 87
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 18 SCPCSQNTW-RILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQL-RIKILG 75
S P ++ +L++DIVGFT I+S S E+ +L+EL+ RFD E+Y QL +++ +G
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIG 60
Query: 76 DCYYCISGAPKERPDHAILSVHMGLSM 102
D Y + DHA + + L M
Sbjct: 61 DAYMVVCNVTVPCDDHADVLLEFALRM 87
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 28 ILYADIVGFTAISSTYSASE----LVKILNELFARFDRLSEKYQQ---LRIKILGDCYYC 80
IL++ IVGF A S +++ E +V +LN+L+ RFD L++ + +++ +GD Y
Sbjct: 15 ILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMT 74
Query: 81 ISGAPKERPDHAILSVHMGLSMVK 104
+SG P+ HA H+ L M++
Sbjct: 75 VSGLPEPCIHHARSICHLALDMME 98
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 28 ILYADIVGFTAISSTYSASE----LVKILNELFARFDRLSEKYQQ---LRIKILGDCYYC 80
IL++ IVGF A S +++ E +V +LN+L+ RFD L++ + +++ + D Y
Sbjct: 16 ILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVCDKYMT 75
Query: 81 ISGAPKERPDHAILSVHMGLSMVK 104
+SG P+ HA H+ L M++
Sbjct: 76 VSGLPEPCIHHARSICHLALDMME 99
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL +D+ GFT+ S + E+VK+LN F + + + + +GD + GAP
Sbjct: 17 ILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTS 76
Query: 88 RPDHAILSVHMGLSMVKAIK 107
+ D A+ +V G+ M A++
Sbjct: 77 QQDDALRAVACGVEMQLALR 96
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp
pdb|1WC0|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp
pdb|1WC3|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC3|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC4|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC4|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC5|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp In Presence Of
Bicarbonate
pdb|1WC5|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp In Presence Of
Bicarbonate
pdb|1WC5|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp In Presence Of
Bicarbonate
pdb|1WC5|D Chain D, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp In Presence Of
Bicarbonate
pdb|2BW7|A Chain A, A Novel Mechanism For Adenylyl Cyclase Inhibition From
The Crystal Structure Of Its Complex With Catechol
Estrogen
pdb|2BW7|B Chain B, A Novel Mechanism For Adenylyl Cyclase Inhibition From
The Crystal Structure Of Its Complex With Catechol
Estrogen
pdb|2BW7|C Chain C, A Novel Mechanism For Adenylyl Cyclase Inhibition From
The Crystal Structure Of Its Complex With Catechol
Estrogen
pdb|2BW7|D Chain D, A Novel Mechanism For Adenylyl Cyclase Inhibition From
The Crystal Structure Of Its Complex With Catechol
Estrogen
Length = 219
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL++DIVGFT +S+ + + ++LNE R + Q K +GD + GAP+E
Sbjct: 30 ILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEE 89
>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas
pdb|1WC1|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas
pdb|1WC1|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas
pdb|1WC6|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas In Presence Of Bicarbonate
Length = 226
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL++DIVGFT +S+ + + ++LNE R + Q K +GD + GAP+E
Sbjct: 37 ILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEE 96
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+ ++DI GFT +S A L +LN +++ KY K +GDC G P
Sbjct: 12 VFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPST 71
Query: 88 R--PDHAILSVHMGLSMVKAIK 107
+ A+ +V MG++M K +K
Sbjct: 72 QGAKKDAVAAVSMGIAMRKHMK 93
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|B Chain B, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|C Chain C, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|D Chain D, Structure Of The Catalytic Core Of Human Samhd1
Length = 528
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 63 SEKYQQLR-IKILGDCYYCISGAPKERPDHAILSVHMGLSMVKAI 106
+ ++Q+LR IK LG YY GA R +H++ ++ +V A+
Sbjct: 40 TPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHAL 84
>pdb|1NNQ|A Chain A, Rubrerythrin From Pyrococcus Furiosus Pfu-1210814
pdb|1NNQ|B Chain B, Rubrerythrin From Pyrococcus Furiosus Pfu-1210814
pdb|2HR5|A Chain A, Pf1283- Rubrerythrin From Pyrococcus Furiosus Iron Bound
Form
pdb|2HR5|B Chain B, Pf1283- Rubrerythrin From Pyrococcus Furiosus Iron Bound
Form
Length = 171
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYC-------------ISGA 84
A+ +T+ A E KI EL+ + +EK + + IK + C C + GA
Sbjct: 103 AVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGA 162
Query: 85 PKER 88
PKE+
Sbjct: 163 PKEK 166
>pdb|3MPS|A Chain A, Peroxide Bound Oxidized Rubrerythrin From Pyrococcus
Furiosus
pdb|3MPS|B Chain B, Peroxide Bound Oxidized Rubrerythrin From Pyrococcus
Furiosus
pdb|3MPS|D Chain D, Peroxide Bound Oxidized Rubrerythrin From Pyrococcus
Furiosus
pdb|3MPS|F Chain F, Peroxide Bound Oxidized Rubrerythrin From Pyrococcus
Furiosus
pdb|3MPS|G Chain G, Peroxide Bound Oxidized Rubrerythrin From Pyrococcus
Furiosus
pdb|3MPS|H Chain H, Peroxide Bound Oxidized Rubrerythrin From Pyrococcus
Furiosus
pdb|3MPS|I Chain I, Peroxide Bound Oxidized Rubrerythrin From Pyrococcus
Furiosus
pdb|3MPS|K Chain K, Peroxide Bound Oxidized Rubrerythrin From Pyrococcus
Furiosus
pdb|3PWF|A Chain A, High Resolution Structure Of The Fully Reduced Form Of
Rubrerythrin From P. Furiosus
pdb|3PWF|B Chain B, High Resolution Structure Of The Fully Reduced Form Of
Rubrerythrin From P. Furiosus
pdb|3PZA|A Chain A, Fully Reduced (All-Ferrous) Pyrococcus Rubrerythrin After
A 10 Second Exposure To Peroxide.
pdb|3PZA|B Chain B, Fully Reduced (All-Ferrous) Pyrococcus Rubrerythrin After
A 10 Second Exposure To Peroxide.
pdb|3QVD|A Chain A, Exposure Of Rubrerythrin From Pyrococcus Furiosus To
Peroxide, Fifteen Second Time Point.
pdb|3QVD|B Chain B, Exposure Of Rubrerythrin From Pyrococcus Furiosus To
Peroxide, Fifteen Second Time Point.
pdb|3QVD|C Chain C, Exposure Of Rubrerythrin From Pyrococcus Furiosus To
Peroxide, Fifteen Second Time Point.
pdb|3QVD|D Chain D, Exposure Of Rubrerythrin From Pyrococcus Furiosus To
Peroxide, Fifteen Second Time Point.
pdb|3QVD|E Chain E, Exposure Of Rubrerythrin From Pyrococcus Furiosus To
Peroxide, Fifteen Second Time Point.
pdb|3QVD|F Chain F, Exposure Of Rubrerythrin From Pyrococcus Furiosus To
Peroxide, Fifteen Second Time Point.
pdb|3QVD|G Chain G, Exposure Of Rubrerythrin From Pyrococcus Furiosus To
Peroxide, Fifteen Second Time Point.
pdb|3QVD|H Chain H, Exposure Of Rubrerythrin From Pyrococcus Furiosus To
Peroxide, Fifteen Second Time Point
Length = 170
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYC-------------ISGA 84
A+ +T+ A E KI EL+ + +EK + + IK + C C + GA
Sbjct: 102 AVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGA 161
Query: 85 PKER 88
PKE+
Sbjct: 162 PKEK 165
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 17 SSCPCSQNTWRILYADIVGFTAISSTYSASE--LVKILNEL-------FARFDRLSEKYQ 67
S P ++TW+ L A G A+ + VKI L R D Y
Sbjct: 24 SISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVDSHMGRLDMRRMSYV 83
Query: 68 QLRIKILGDCYYCISGAPKERPDHAILSVHMGLSMVKAI 106
Q K+LG + +G+P+ PD + V GL + I
Sbjct: 84 QRMGKLLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERI 122
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 17 SSCPCSQNTWRILYADIVGFTAISSTYSASE--LVKILNEL-------FARFDRLSEKYQ 67
S P ++TW+ L A G A+ + VKI L R D Y
Sbjct: 24 SISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVDSHMGRLDMRRMSYV 83
Query: 68 QLRIKILGDCYYCISGAPKERPDHAILSVHMGLSMVKAI 106
Q K+LG + +G+P+ PD + V GL + I
Sbjct: 84 QRMGKLLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERI 122
>pdb|1VHO|A Chain A, Crystal Structure Of A Putative PeptidaseENDOGLUCANASE
Length = 346
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 33 IVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHA 92
+VG A+ + S LVK+L E R+D + Y ++ C ++GA + PD A
Sbjct: 166 VVG-KALDNRASCGVLVKVL-EFLKRYDHPWDVYVVFSVQEETGCLGALTGAYEINPDAA 223
Query: 93 IL 94
I+
Sbjct: 224 IV 225
>pdb|1Y10|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|B Chain B, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|C Chain C, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|D Chain D, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y11|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, Active
State
Length = 407
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 28 ILYADIVGFTAISSTYSASEL 48
+ +AD+VGFT + SA EL
Sbjct: 218 VAFADLVGFTQLGEVVSAEEL 238
>pdb|3B7M|A Chain A, Crystal Structure Of A Meso-Active Thermo-Stable Cellulase
(Mt Cel12a) Derived By Making Non-Contiguous Mutations
In The Active Surface Of The Cel12a Cellulase Of
Rhodothermus Marinus
pdb|3B7M|B Chain B, Crystal Structure Of A Meso-Active Thermo-Stable Cellulase
(Mt Cel12a) Derived By Making Non-Contiguous Mutations
In The Active Surface Of The Cel12a Cellulase Of
Rhodothermus Marinus
pdb|3B7M|C Chain C, Crystal Structure Of A Meso-Active Thermo-Stable Cellulase
(Mt Cel12a) Derived By Making Non-Contiguous Mutations
In The Active Surface Of The Cel12a Cellulase Of
Rhodothermus Marinus
pdb|3B7M|D Chain D, Crystal Structure Of A Meso-Active Thermo-Stable Cellulase
(Mt Cel12a) Derived By Making Non-Contiguous Mutations
In The Active Surface Of The Cel12a Cellulase Of
Rhodothermus Marinus
Length = 216
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 7 GDVVLIEANASSCPCSQNTWRILYAD-----IVGFTAISSTYSASEL 48
GDV+ I + ++ + TW + YAD ++ + + T S +EL
Sbjct: 123 GDVMPIGSRVATVELAGATWEVWYADNGAMNVISYVRTTPTTSVTEL 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,894,329
Number of Sequences: 62578
Number of extensions: 90421
Number of successful extensions: 316
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 22
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)