Query psy13602
Match_columns 107
No_of_seqs 127 out of 1038
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 23:25:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uvj_A Guanylate cyclase solub 99.9 1.9E-26 6.6E-31 159.8 9.0 93 15-107 4-96 (225)
2 1azs_A VC1; complex (lyase/hyd 99.9 9.4E-26 3.2E-30 156.3 10.3 87 20-106 29-115 (220)
3 2wz1_A Guanylate cyclase solub 99.9 8.6E-26 3E-30 156.1 10.1 93 15-107 2-101 (219)
4 2w01_A Adenylate cyclase; guan 99.9 7.2E-25 2.5E-29 150.1 12.7 88 19-106 8-95 (208)
5 1ab8_A Adenylyl cyclase; lyase 99.9 5.3E-25 1.8E-29 152.1 9.5 93 14-106 3-113 (220)
6 3et6_A Soluble guanylyl cyclas 99.9 1E-24 3.5E-29 147.1 10.3 88 19-106 3-91 (190)
7 3r5g_A CYAB; adenylyl cyclase, 99.9 3.7E-24 1.3E-28 145.0 11.7 87 20-106 4-92 (198)
8 1wc3_A Adenylate cyclase; solu 99.9 3.9E-24 1.3E-28 147.6 11.5 90 17-106 19-110 (219)
9 1yk9_A Adenylate cyclase; beta 99.9 1.1E-25 3.7E-30 154.0 1.9 90 18-107 3-92 (204)
10 1ybt_A Hydrolase, alpha/beta h 99.9 5.9E-23 2E-27 138.5 6.7 84 16-106 8-91 (184)
11 1fx2_A Receptor-type adenylate 99.9 2.6E-22 8.9E-27 139.2 8.2 84 15-106 2-85 (235)
12 3mr7_A Adenylate/guanylate cyc 99.8 1.3E-20 4.4E-25 127.0 10.5 79 20-106 2-81 (189)
13 1y10_A Hypothetical protein RV 99.8 4.9E-21 1.7E-25 142.8 7.4 80 19-106 209-288 (407)
14 2qv6_A MJ0145, GTP cyclohydrol 95.4 0.099 3.4E-06 36.9 8.0 62 22-83 128-190 (268)
15 3i5c_A Fusion of general contr 94.9 0.25 8.6E-06 31.9 8.6 60 24-83 60-119 (206)
16 3mtk_A Diguanylate cyclase/pho 93.6 0.81 2.8E-05 28.9 9.5 61 23-84 34-94 (178)
17 3hva_A Protein FIMX; ggdef dig 92.9 1.1 3.6E-05 28.1 9.0 59 24-83 43-101 (177)
18 3icl_A EAL/ggdef domain protei 92.6 1.1 3.9E-05 27.8 8.8 60 23-83 28-87 (171)
19 3bre_A Probable two-component 91.2 1.5 5.1E-05 30.7 8.4 60 24-83 201-260 (358)
20 3ign_A Diguanylate cyclase; gg 90.9 1.8 6.1E-05 27.0 7.8 59 24-83 38-96 (177)
21 3qyy_A Response regulator; C-D 89.0 1.3 4.6E-05 27.4 6.0 58 24-82 41-98 (167)
22 3hvw_A Diguanylate-cyclase (DG 88.5 1.7 6E-05 27.4 6.3 59 23-83 25-86 (176)
23 3tvk_A DGC, diguanylate cyclas 88.1 3.3 0.00011 26.8 7.5 59 24-83 32-90 (179)
24 3pjx_A Cyclic dimeric GMP bind 87.8 6.2 0.00021 28.6 10.7 61 23-83 46-109 (430)
25 3ezu_A Ggdef domain protein; m 81.9 5.2 0.00018 28.4 6.7 59 24-83 212-270 (342)
26 1w25_A Stalked-cell differenti 81.8 12 0.00043 27.0 9.1 59 24-83 318-376 (459)
27 3tek_A Thermodbp-single strand 67.8 1.2 4.2E-05 27.8 0.2 47 30-84 76-122 (148)
28 2qv6_A MJ0145, GTP cyclohydrol 65.9 13 0.00046 25.9 5.3 57 28-84 4-63 (268)
29 2xgv_A PSIV capsid N-terminal 65.9 2.5 8.7E-05 26.9 1.4 22 33-54 37-58 (142)
30 3ung_C CMR2DHD; ferredoxin fol 63.4 28 0.00097 27.6 7.1 74 24-106 414-517 (693)
31 2xde_A GAG polyprotein, HIV-1 62.1 3.3 0.00011 26.4 1.4 22 33-54 38-59 (145)
32 2wlv_A GAG polyprotein, HIV-2 59.7 3.8 0.00013 26.1 1.4 22 33-54 36-57 (144)
33 1xw8_A UPF0271 protein YBGL; N 59.6 9.6 0.00033 26.5 3.5 66 3-70 31-100 (252)
34 2xgu_A Relik capsid N-terminal 58.2 4.2 0.00014 26.1 1.4 22 33-54 37-58 (149)
35 1v6t_A Hypothetical UPF0271 pr 57.6 11 0.00037 26.3 3.5 66 3-70 36-105 (255)
36 2x5e_A UPF0271 protein PA4511; 54.4 10 0.00034 26.4 2.9 66 3-70 42-111 (252)
37 2dfa_A Hypothetical UPF0271 pr 54.2 10 0.00035 26.4 2.9 66 3-70 36-105 (250)
38 2diu_A KIAA0430 protein; struc 49.1 38 0.0013 19.9 5.2 47 40-97 18-64 (96)
39 2xvc_A ESCRT-III, SSO0910; cel 47.9 14 0.00049 19.8 2.3 26 30-56 25-50 (59)
40 1ufw_A Synaptojanin 2; RNP dom 40.8 54 0.0018 19.2 5.9 32 61-96 43-75 (95)
41 4h8e_A Undecaprenyl pyrophosph 40.3 90 0.0031 21.6 6.9 50 23-77 69-120 (256)
42 3ugs_B Undecaprenyl pyrophosph 38.0 93 0.0032 21.1 7.6 50 23-77 51-102 (225)
43 3hvb_A Protein FIMX; EAL phosp 37.7 6.9 0.00024 28.4 0.0 60 23-83 42-101 (437)
44 2dnr_A Synaptojanin-1; RRM dom 33.5 72 0.0025 18.5 4.6 24 59-82 32-56 (91)
45 3t98_B Nucleoporin NUP58/NUP45 32.0 74 0.0025 18.5 3.9 25 41-65 42-66 (93)
46 1eia_A EIAV capsid protein P26 31.2 20 0.00067 24.1 1.4 21 34-54 24-44 (207)
47 1l6n_A GAG polyprotein; matrix 29.6 21 0.00073 25.3 1.4 22 33-54 169-190 (289)
48 2ctj_A Vigilin; K homology typ 27.8 49 0.0017 19.0 2.6 49 36-84 16-68 (95)
49 2vg0_A Short-chain Z-isoprenyl 27.4 1.4E+02 0.0049 20.0 6.0 48 24-76 49-96 (227)
50 2qn6_B Translation initiation 25.4 1E+02 0.0035 17.7 4.0 31 40-70 58-88 (93)
51 1k8b_A EIF-2-beta, probable tr 22.0 39 0.0013 17.5 1.3 21 32-52 10-32 (52)
52 2izx_A CAMP-dependent protein 21.9 14 0.00047 17.9 -0.6 26 36-61 14-39 (41)
53 3lo3_A Uncharacterized conserv 21.1 1.2E+02 0.0042 17.1 3.5 31 52-84 19-49 (94)
54 3h47_A Ca, capsid protein P24; 20.6 63 0.0022 22.0 2.4 21 34-54 38-58 (231)
No 1
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=99.93 E-value=1.9e-26 Score=159.78 Aligned_cols=93 Identities=30% Similarity=0.502 Sum_probs=87.6
Q ss_pred cCCCCCCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHH
Q psy13602 15 NASSCPCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAIL 94 (107)
Q Consensus 15 ~~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~ 94 (107)
|+...+++++++||||+||+|||++++.++|++++.+||++|..+++++.+|||+++|++||+|||+||+|....+|+.+
T Consensus 4 g~~~~~~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~~g~v~k~~GD~~ma~fg~p~~~~~~a~~ 83 (225)
T 3uvj_A 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESDTHAVQ 83 (225)
T ss_dssp -CEEEEEEEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCEEECCSTTCEEEEESSSSCCTTHHHH
T ss_pred CCccCCcccceEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEeeCcEEEEEECCCCCchHHHHH
Confidence 45556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q psy13602 95 SVHMGLSMVKAIK 107 (107)
Q Consensus 95 a~~~Al~~~~~i~ 107 (107)
|+++|++|++.++
T Consensus 84 a~~~al~~~~~~~ 96 (225)
T 3uvj_A 84 IALMALKMMELSD 96 (225)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 2
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=99.93 E-value=9.4e-26 Score=156.31 Aligned_cols=87 Identities=55% Similarity=0.930 Sum_probs=83.6
Q ss_pred CCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHHHHHHH
Q psy13602 20 PCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILSVHMG 99 (107)
Q Consensus 20 ~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~a~~~A 99 (107)
.++++++||||+||+|||+++++++|++++.+||+||+.+++++.+|||+++|++||+|||+||+|.+.++|+.+|++||
T Consensus 29 ~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~~~a~~Av~~A 108 (220)
T 1azs_A 29 IQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMG 108 (220)
T ss_dssp EEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHH
T ss_pred ccccccEEEEEEEccChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCeEEEEECCCCCChHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHh
Q psy13602 100 LSMVKAI 106 (107)
Q Consensus 100 l~~~~~i 106 (107)
++|++.+
T Consensus 109 l~m~~~l 115 (220)
T 1azs_A 109 MDMIEAI 115 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 3
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=99.93 E-value=8.6e-26 Score=156.11 Aligned_cols=93 Identities=30% Similarity=0.508 Sum_probs=86.4
Q ss_pred cCCCCCCccccEEEEEEeccChhhhhccCC----HHHHHHHHHHHHHHHHHHHH---hcCcEEEEEeCcEEEEEeCCCCC
Q psy13602 15 NASSCPCSQNTWRILYADIVGFTAISSTYS----ASELVKILNELFARFDRLSE---KYQQLRIKILGDCYYCISGAPKE 87 (107)
Q Consensus 15 ~~~~~~~~~~~vtvlf~di~~ft~l~~~~~----~~~~~~~Ln~~~~~~~~~i~---~~~g~~~k~iGD~~ma~~g~~~~ 87 (107)
|+...+++++++||||+||+|||+++++++ |++++.+||+||+.+++++. +|+|+++|++||++||+||.|..
T Consensus 2 G~~~~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~ma~fg~p~~ 81 (219)
T 2wz1_A 2 KRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEP 81 (219)
T ss_dssp ---CCCEEEEEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSC
T ss_pred CCccCccceeeEEEEEEEccCcHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEEEEECCCCC
Confidence 566778899999999999999999999999 99999999999999999999 88999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHhC
Q psy13602 88 RPDHAILSVHMGLSMVKAIK 107 (107)
Q Consensus 88 ~~~~a~~a~~~Al~~~~~i~ 107 (107)
.++|+.+|++||++|++.++
T Consensus 82 ~~~~a~~A~~~Al~~~~~~~ 101 (219)
T 2wz1_A 82 CIHHARSICHLALDMMEIAG 101 (219)
T ss_dssp CTTHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999764
No 4
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=99.93 E-value=7.2e-25 Score=150.05 Aligned_cols=88 Identities=27% Similarity=0.400 Sum_probs=84.2
Q ss_pred CCCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHHHHHH
Q psy13602 19 CPCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILSVHM 98 (107)
Q Consensus 19 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~a~~~ 98 (107)
...+++++||||+||+|||+++++++|++++.+||+||+.+++++.+|||+++|++||++||+||.|....+|+.+|++|
T Consensus 8 l~~e~~~vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~~~a~~Av~~ 87 (208)
T 2w01_A 8 MGGDRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTSQQDDALRAVAC 87 (208)
T ss_dssp CCCEEEEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCTTHHHHHHHH
T ss_pred CCCeEEEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCEEEEEECCCCCChhHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHh
Q psy13602 99 GLSMVKAI 106 (107)
Q Consensus 99 Al~~~~~i 106 (107)
|++|++.+
T Consensus 88 Al~~~~~l 95 (208)
T 2w01_A 88 GVEMQLAL 95 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 5
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=99.92 E-value=5.3e-25 Score=152.11 Aligned_cols=93 Identities=24% Similarity=0.331 Sum_probs=82.0
Q ss_pred hcCCCCCCccccEEEEEEeccChhhhhccCC----HHHHHHHHHHHHHHHHHHHHhc---CcEEEEEeCcEEEEEeCCCC
Q psy13602 14 ANASSCPCSQNTWRILYADIVGFTAISSTYS----ASELVKILNELFARFDRLSEKY---QQLRIKILGDCYYCISGAPK 86 (107)
Q Consensus 14 ~~~~~~~~~~~~vtvlf~di~~ft~l~~~~~----~~~~~~~Ln~~~~~~~~~i~~~---~g~~~k~iGD~~ma~~g~~~ 86 (107)
+++...+++++++||||+||+|||+++++++ |++++.+||++|..+++++.+| ||+++|++||+|||+||+|.
T Consensus 3 ~~~~~~~~~~~~vtvlF~DI~gfT~l~~~l~~~~~p~~~~~~Ln~~~~~~~~~i~~~~~~g~~~ik~iGD~~ma~fg~p~ 82 (220)
T 1ab8_A 3 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSA 82 (220)
T ss_dssp ----CCEEEEEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCC
T ss_pred CCCcccccccCcEEEEEEEccchHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeCceEEEEECCCc
Confidence 4555667889999999999999999999885 7899999999999999999987 88999999999999999987
Q ss_pred -----------CCchHHHHHHHHHHHHHHHh
Q psy13602 87 -----------ERPDHAILSVHMGLSMVKAI 106 (107)
Q Consensus 87 -----------~~~~~a~~a~~~Al~~~~~i 106 (107)
...+|+.+|++||++|++.+
T Consensus 83 ~~~~~~~~~~~~~~~~a~~a~~~Al~~~~~l 113 (220)
T 1ab8_A 83 IPSQEHAQEPERQYMHIGTMVEFAYALVGKL 113 (220)
T ss_dssp SCCC--------CCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999875
No 6
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=99.92 E-value=1e-24 Score=147.09 Aligned_cols=88 Identities=32% Similarity=0.528 Sum_probs=84.0
Q ss_pred CCCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhc-CcEEEEEeCcEEEEEeCCCCCCchHHHHHHH
Q psy13602 19 CPCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKY-QQLRIKILGDCYYCISGAPKERPDHAILSVH 97 (107)
Q Consensus 19 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~-~g~~~k~iGD~~ma~~g~~~~~~~~a~~a~~ 97 (107)
.+++++++||||+||+|||+++++++|++++.+||++|+.+++++.+| |++++|++||++|++||.|....+|+.+|++
T Consensus 3 ~~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~~GD~~~a~fg~~~~~~~~~~~a~~ 82 (190)
T 3et6_A 3 PAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVLLE 82 (190)
T ss_dssp CCEEEEEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCSTHHHHHHH
T ss_pred CccccceEEEEEeEecChhHhHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeCCEEEEEECCCCCchhHHHHHHH
Confidence 567899999999999999999999999999999999999999999999 7788899999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy13602 98 MGLSMVKAI 106 (107)
Q Consensus 98 ~Al~~~~~i 106 (107)
+|++|++.+
T Consensus 83 ~al~~~~~~ 91 (190)
T 3et6_A 83 FALRMHEEA 91 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 7
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=99.91 E-value=3.7e-24 Score=145.02 Aligned_cols=87 Identities=28% Similarity=0.538 Sum_probs=82.5
Q ss_pred CCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCC--chHHHHHHH
Q psy13602 20 PCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKER--PDHAILSVH 97 (107)
Q Consensus 20 ~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~--~~~a~~a~~ 97 (107)
..+++++||||+||+|||++++.++|++++.+||++|..+++++.+|||+++|++||++|++||.|... .+|+.+|++
T Consensus 4 ~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~~~~~a~~a~~ 83 (198)
T 3r5g_A 4 ETQRKKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPSTQGAKKDAVAAVS 83 (198)
T ss_dssp CCEEEEEEEEEEEEETHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEETTEEEEEESSSSCSCHHHHHHHHHH
T ss_pred CceEEEEEEEEEEccccchhhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeeCCEEEEEECCCcccccHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999876 689999999
Q ss_pred HHHHHHHHh
Q psy13602 98 MGLSMVKAI 106 (107)
Q Consensus 98 ~Al~~~~~i 106 (107)
+|++|++.+
T Consensus 84 ~al~i~~~~ 92 (198)
T 3r5g_A 84 MGIAMRKHM 92 (198)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999865
No 8
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=99.91 E-value=3.9e-24 Score=147.64 Aligned_cols=90 Identities=27% Similarity=0.395 Sum_probs=83.3
Q ss_pred CCCCCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCC--chHHHH
Q psy13602 17 SSCPCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKER--PDHAIL 94 (107)
Q Consensus 17 ~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~--~~~a~~ 94 (107)
.....+++++||||+||+|||+++++++|++++.+||+||+.+++++.+|||+++|++||++||+||.|... .+|+.+
T Consensus 19 ~~l~~e~~~vtvlF~DI~gfT~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~~~~~a~~ 98 (219)
T 1wc3_A 19 SHMRPEPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMSPSEQVRR 98 (219)
T ss_dssp CCCCCEEEEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCCHHHHHHH
T ss_pred cccCCceeEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCeEEEEECCCCCCCChHHHHH
Confidence 334567899999999999999999999999999999999999999999999999999999999999999753 578999
Q ss_pred HHHHHHHHHHHh
Q psy13602 95 SVHMGLSMVKAI 106 (107)
Q Consensus 95 a~~~Al~~~~~i 106 (107)
|++||++|++.+
T Consensus 99 Av~~Al~~~~~l 110 (219)
T 1wc3_A 99 AIATARQMLVAL 110 (219)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 9
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.1e-25 Score=154.02 Aligned_cols=90 Identities=32% Similarity=0.584 Sum_probs=84.3
Q ss_pred CCCCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHHHHH
Q psy13602 18 SCPCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILSVH 97 (107)
Q Consensus 18 ~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~a~~ 97 (107)
..+++++++||||+||+|||.++++++|++++.+||+||+.+++++.+|||+++|++||++||+||.|...++|+.+|++
T Consensus 3 ~~~~~~~~vtvlf~DI~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~gG~v~k~~GD~~ma~fg~p~~~~~~a~~A~~ 82 (204)
T 1yk9_A 3 IIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALAD 82 (204)
T ss_dssp ---CCCSCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCTTHHHHHHT
T ss_pred CCccccCcEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCeEEEEECCCCCChHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHhC
Q psy13602 98 MGLSMVKAIK 107 (107)
Q Consensus 98 ~Al~~~~~i~ 107 (107)
||++|++.++
T Consensus 83 ~Al~~~~~~~ 92 (204)
T 1yk9_A 83 FALDMTNVAA 92 (204)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 10
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=99.88 E-value=5.9e-23 Score=138.49 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=75.2
Q ss_pred CCCCCCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHHH
Q psy13602 16 ASSCPCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILS 95 (107)
Q Consensus 16 ~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~a 95 (107)
......+++++||||+||+|||+++++++|+++..+||++|+.+++++.+|||+++|++||++|++||.| .+|
T Consensus 8 ~~~~~~~~~~~tvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~v~k~~GD~~ma~f~~p-------~~A 80 (184)
T 1ybt_A 8 HHHGSAERMLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSP-------SAA 80 (184)
T ss_dssp -----CEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCH-------HHH
T ss_pred CCCCCCceEEEEEEEEECcCcHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeEeCCEEEEEeCCH-------HHH
Confidence 3445677899999999999999999999999999999999999999999999999999999999999976 359
Q ss_pred HHHHHHHHHHh
Q psy13602 96 VHMGLSMVKAI 106 (107)
Q Consensus 96 ~~~Al~~~~~i 106 (107)
++||++|++.+
T Consensus 81 ~~~Al~~~~~l 91 (184)
T 1ybt_A 81 IACADDIVDAV 91 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 11
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=99.87 E-value=2.6e-22 Score=139.24 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=76.5
Q ss_pred cCCCCCCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHH
Q psy13602 15 NASSCPCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAIL 94 (107)
Q Consensus 15 ~~~~~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~ 94 (107)
++...+++++++||||+||+|||++++.. |++++.+||+||+.+++++.+|||+++|++||+||++||.|. +
T Consensus 2 ~~~~~~~~~~~vtvlF~DI~gfT~l~~~~-~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~ma~fg~p~-------~ 73 (235)
T 1fx2_A 2 NNRAPKEPTDPVTLIFTDIESSTALWAAH-PDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSPF-------A 73 (235)
T ss_dssp GGGSCCCTTSCEEEEEEEETTHHHHHHHC-TTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCHH-------H
T ss_pred CCcCCCCCCCcEEEEEEeccChHHHHHHC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCCeEEEEeCCHH-------H
Confidence 45567788999999999999999999996 899999999999999999999999999999999999999854 4
Q ss_pred HHHHHHHHHHHh
Q psy13602 95 SVHMGLSMVKAI 106 (107)
Q Consensus 95 a~~~Al~~~~~i 106 (107)
|+++|++|++.+
T Consensus 74 A~~~Al~i~~~l 85 (235)
T 1fx2_A 74 AVQLAQELQLCF 85 (235)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999998764
No 12
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=99.84 E-value=1.3e-20 Score=127.02 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=71.5
Q ss_pred CCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHH-HHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHHHHHH
Q psy13602 20 PCSQNTWRILYADIVGFTAISSTYSASELVKILNELFAR-FDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILSVHM 98 (107)
Q Consensus 20 ~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~-~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~a~~~ 98 (107)
+.+++++||||+||+|||++++.++++.+ ..||++|.. +++++.+|||+++|++||++|++||. +.+|++|
T Consensus 2 ~~e~r~vtvlf~Di~gft~l~~~~~~~~~-~~l~~~~~~~~~~~i~~~~G~v~k~~GD~~~a~f~~-------~~~A~~~ 73 (189)
T 3mr7_A 2 NAERRLCAILAADMAGYSRLMERNETDVL-NRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT-------AQAALRC 73 (189)
T ss_dssp CCEEEEEEEEEEEECCCCGGGCCCCHHHH-HHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEESS-------HHHHHHH
T ss_pred CCcEEEEEEEEEEchhhHHHHhhCCHHHH-HHHHHHHHHHHHHHHHHcCCEEEEEeCCEEEEEeCC-------HHHHHHH
Confidence 46789999999999999999999998876 778888887 99999999999999999999999985 4679999
Q ss_pred HHHHHHHh
Q psy13602 99 GLSMVKAI 106 (107)
Q Consensus 99 Al~~~~~i 106 (107)
|++|++.+
T Consensus 74 Al~i~~~l 81 (189)
T 3mr7_A 74 ALEIQQAM 81 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 13
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=99.83 E-value=4.9e-21 Score=142.77 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=72.4
Q ss_pred CCCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHHHHHH
Q psy13602 19 CPCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILSVHM 98 (107)
Q Consensus 19 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~a~~~ 98 (107)
...+++++||||+||+|||+++++++|++++.+||+|++.++.++. |+|+++|++||+|||+||.|. .|++|
T Consensus 209 ~~~~~~~vTVlFaDIvgFT~ls~~~~p~evv~lLn~~~~~~~~i~~-~~g~~iKtiGDa~mavfg~p~-------~a~~~ 280 (407)
T 1y10_A 209 PLPGARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTA-PPVWFIKTIGDAVMLVCPDPA-------PLLDT 280 (407)
T ss_dssp CCTTCEEEEEEEEEECSBCTTSCBCCHHHHHHHHHHHHHHHHHHCC-TTCEEEEEETTEEEEEESSHH-------HHHHH
T ss_pred cccceeeEEEEEEEccCchHHHhhCCHHHHHHHHHHHHHHHHHHHH-cCcEEEEEecceEEEEECCHH-------HHHHH
Confidence 3457899999999999999999999999999999999998877665 899999999999999999865 48999
Q ss_pred HHHHHHHh
Q psy13602 99 GLSMVKAI 106 (107)
Q Consensus 99 Al~~~~~i 106 (107)
|++|++.+
T Consensus 281 Al~m~~~l 288 (407)
T 1y10_A 281 VLKLVEVV 288 (407)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 14
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=95.40 E-value=0.099 Score=36.86 Aligned_cols=62 Identities=23% Similarity=0.163 Sum_probs=55.7
Q ss_pred ccccEEEEEEeccChhh-hhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 22 SQNTWRILYADIVGFTA-ISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 22 ~~~~vtvlf~di~~ft~-l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
....++|...||.++|. .....++.+......+++..+-+.+++++|...-.=||.||++..
T Consensus 128 ~dsqIaVahiDI~d~t~~~t~~~s~yd~~~~~l~l~~~Ll~y~~~igG~lf~iGgdny~iftt 190 (268)
T 2qv6_A 128 VDGYVQIAHIDINNITGTLTDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPSN 190 (268)
T ss_dssp SSCCEEEEEEEETTHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEETTEEEEECT
T ss_pred CcCceEEEEEEecCccccccccCChHHHHHHHHHHHHHHHHHHHHhCCEEEEECCCEEEEEeC
Confidence 35689999999999999 566669999999999999999999999999988888999999986
No 15
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=94.90 E-value=0.25 Score=31.89 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=47.1
Q ss_pred ccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 24 NTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
...++++.||.+|..+-...+.+.--.+|..+-..+.+.+.+.+..+-++-||.++++..
T Consensus 60 ~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~~~~~~~R~~~d~F~il~~ 119 (206)
T 3i5c_A 60 SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLP 119 (206)
T ss_dssp CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEE
T ss_pred CcEEEEEEECcchhHHHhccChhHHHHHHHHHHHHHHHhcCCCCcEEEEecCCeEEEEEC
Confidence 458999999999999999999887767777666666555544556677899999988873
No 16
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=93.63 E-value=0.81 Score=28.95 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=49.4
Q ss_pred cccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCC
Q psy13602 23 QNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGA 84 (107)
Q Consensus 23 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~ 84 (107)
....++++.||.+|..+....+.+.--.+|..+-..+.+.+.. +..+-++-||.++++...
T Consensus 34 ~~~~~l~~idid~f~~in~~~G~~~gd~lL~~ia~~L~~~~~~-~~~~~R~~~d~F~il~~~ 94 (178)
T 3mtk_A 34 CIDTYLIFLEVRDLEKLNVTYGYDLVDELIIHISKRIKDIAGE-GNKAFKIGFDRFAIICKS 94 (178)
T ss_dssp CTTEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHCS-SSEEEEEETTEEEEEEEC
T ss_pred CCceEEEEEEhhHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEecC
Confidence 4568999999999999999999888777888777777776643 567788999999888743
No 17
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=92.86 E-value=1.1 Score=28.09 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=47.4
Q ss_pred ccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 24 NTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
...++++.||.+|..+-...+.+.--.+|..+-..+.+.+.. +..+-++-||.++++..
T Consensus 43 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~ 101 (177)
T 3hva_A 43 KPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALFK 101 (177)
T ss_dssp CCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GCEEEECSSSEEEEEEE
T ss_pred CCeEEEEEeCCCHHHHHHHhCchhHHHHHHHHHHHHHHhCCC-CceEEEecCCeEEEEeC
Confidence 468999999999999999988877777777777777777655 45677888999888863
No 18
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=92.56 E-value=1.1 Score=27.75 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=47.7
Q ss_pred cccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 23 QNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 23 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
....++++.||.+|..+....+.+.--.+|..+-..+.+.+.. +..+-++-||.++++..
T Consensus 28 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~ 87 (171)
T 3icl_A 28 GNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRD-GDTVARIGGDKFTILLN 87 (171)
T ss_dssp TSCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCT-TCEEEEETTTEEEEEES
T ss_pred CCcEEEEEEEChHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEec
Confidence 3467899999999999999999888777777777777666543 55778888999988874
No 19
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=91.24 E-value=1.5 Score=30.69 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=42.6
Q ss_pred ccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 24 NTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
...++++.||.+|..+-...+...--.+|..+...+.+.+.+.+..+-++-||.++++..
T Consensus 201 ~~~~l~~idid~fk~ind~~G~~~gD~~L~~va~~l~~~~~~~~~~~~R~ggdeF~ill~ 260 (358)
T 3bre_A 201 SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLP 260 (358)
T ss_dssp CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHhcCCcCcEEEEecCCeEEEEeC
Confidence 357899999999999888777665555555555555443333455677889999888764
No 20
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=90.94 E-value=1.8 Score=27.04 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=44.9
Q ss_pred ccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 24 NTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
...++++.||.+|..+....+.+.--.+|..+-..+.+.+.. +..+-++-||.++++..
T Consensus 38 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~-~~~~~R~~~d~F~ill~ 96 (177)
T 3ign_A 38 QATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQ-SDSAGRYGGEEFGIILP 96 (177)
T ss_dssp CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSCT-TSEEEECSSSEEEEEEE
T ss_pred CceEEEEEEchhhHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEeC
Confidence 467999999999999999998887766676666666554432 45677888999888763
No 21
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=89.02 E-value=1.3 Score=27.41 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=44.2
Q ss_pred ccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEe
Q psy13602 24 NTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCIS 82 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~ 82 (107)
...++++.||.+|..+-+..+.+.-=.+|..+-..+.+.+.. +..+-++-||.++++.
T Consensus 41 ~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~-~~~~~R~~~deF~il~ 98 (167)
T 3qyy_A 41 WPFVLFVLDMDNLKPINDRFGHLAGDRVLVRLVESAYGWLGA-QDWIGRWGGDEFLIGV 98 (167)
T ss_dssp CCCEEEEEEESSHHHHHHHHCHHHHHHHHHHHHHHHTTTCCT-TCEEEEEETTEEEEEE
T ss_pred CcEEEEEEechhhhHHHhhcCcHHHHHHHHHHHHHHHHhcCC-CCEEEeecCceEEEEc
Confidence 357999999999999999998877666666655555544432 4577889999998877
No 22
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=88.47 E-value=1.7 Score=27.37 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=49.0
Q ss_pred cccEEEEEEec---cChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 23 QNTWRILYADI---VGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 23 ~~~vtvlf~di---~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
.+..++++.|| .+|..+.+..+.+.-=.+|..+-..+.+.+.. ..+-++-||.++++..
T Consensus 25 ~~~~~l~~i~i~~id~f~~in~~~G~~~gD~~L~~ia~~L~~~~~~--~~v~R~~~deF~ill~ 86 (176)
T 3hvw_A 25 DGALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAELPD--FTLYKISPTRFGLLLP 86 (176)
T ss_dssp HSEEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCTT--SCEEEEETTEEEEEEE
T ss_pred CCCceEEEEEecCHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHCCC--CeEEEecCCEEEEEeC
Confidence 34678999999 89999999999888778888888888777766 6788899999988874
No 23
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=88.07 E-value=3.3 Score=26.84 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=43.1
Q ss_pred ccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 24 NTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
.+.++++.||-+|..+-+..+-..-=.+|..+-..+.+.+.. +..+-++=||.++++..
T Consensus 32 ~~~~l~~iDiD~FK~INd~~Gh~~GD~vL~~va~~L~~~~~~-~~~v~R~gGDEF~ill~ 90 (179)
T 3tvk_A 32 LNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRD-YETVYRYGGEEFIIIVK 90 (179)
T ss_dssp SEEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHTSCT-TSCEEECSSSEEEEEEE
T ss_pred CCEEEEEEECCCCcHHHhccCchhHHHHHHHHHHHhHhcCCc-ccEEEEccCCEEEEEcC
Confidence 468999999999999888877554445555555555554433 45678889999988873
No 24
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=87.81 E-value=6.2 Score=28.60 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=51.2
Q ss_pred cccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhc---CcEEEEEeCcEEEEEeC
Q psy13602 23 QNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKY---QQLRIKILGDCYYCISG 83 (107)
Q Consensus 23 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~---~g~~~k~iGD~~ma~~g 83 (107)
....++++.||.+|..+-...+.+.-=.+|..+-..+.+.+..+ +..+-++-||.+.++..
T Consensus 46 ~~~~~l~~idid~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~~~~~~~~v~R~ggdeF~ill~ 109 (430)
T 3pjx_A 46 ASSGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECAKYPETQNLVTRIRGGEFAVLAP 109 (430)
T ss_dssp CSCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTSGGGTTCEEEEETTEEEEEEE
T ss_pred cCceEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCcCceEEEecCceEEEEeC
Confidence 35678999999999999999998888888888888888887764 66788899999988864
No 25
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Probab=81.89 E-value=5.2 Score=28.41 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=40.4
Q ss_pred ccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 24 NTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
...++++.||.+|..+-+..+.+.-=.+|..+-..+.+.+.. +..+-++-||.+.++..
T Consensus 212 ~~~all~idId~fk~INd~~G~~~gD~lL~~va~~L~~~~~~-~d~v~R~ggdeF~ill~ 270 (342)
T 3ezu_A 212 SNVGIMLIDLDYFKLVGDNYGHQTGDRILQLVAETITSHLRR-SDVVGRYDGDEFVVYLS 270 (342)
T ss_dssp CEEEEEEEEEEECCCCC-----CHHHHHHHHHHHHHHHTCCT-TCEEEECSSSEEEEEES
T ss_pred CcEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHHCCC-CcEEEEEcCCEEEEEEC
Confidence 468999999999999999888776666666666666555433 45677888999988873
No 26
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=81.80 E-value=12 Score=26.97 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=46.3
Q ss_pred ccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 24 NTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
...++++.||-+|..+-...+-..-=.+|..+-..+.+.+. .+..+-++=||.+.++..
T Consensus 318 ~~~~l~~idid~fk~iNd~~Gh~~gD~~L~~~a~~l~~~~~-~~d~~~R~ggdeF~il~~ 376 (459)
T 1w25_A 318 DPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVR-AIDLPCRYGGEEFVVIMP 376 (459)
T ss_dssp CCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSC-TTSEEEECSSSEEEEEET
T ss_pred CcEEEEEEEchhhchhhhccChhhHHHHHHHHHHHHHHhCC-CcCEEEEEcCceEEEEeC
Confidence 46799999999999999999987766677776666666553 345778888999988874
No 27
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper; 2.00A {Thermoproteus tenax}
Probab=67.76 E-value=1.2 Score=27.80 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=33.3
Q ss_pred EEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCC
Q psy13602 30 YADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGA 84 (107)
Q Consensus 30 f~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~ 84 (107)
|..|+++...-. +..++.+.|.++| |.+++-+|+..+ ||-+|.+-.+
T Consensus 76 Fn~iRds~~Fr~--ssre~Fd~~K~WF--FnE~~pky~l~k----GDiFmiiTel 122 (148)
T 3tek_A 76 FNRIRDSEKFRE--TSRELFDGLKKWF--FEEAVPRYNLER----GDIFMISTEL 122 (148)
T ss_dssp HHHHTTSHHHHH--HHHHHHHHHHHHH--HHTHHHHHTCCT----TCCEEEEEEE
T ss_pred HHHhhcHHHHHH--HHHHHHHHHHHHH--HhhhhhhhCCCc----CcEEEEEEEE
Confidence 445555544332 4567777777777 889999999876 9999887643
No 28
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=65.92 E-value=13 Score=25.95 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=46.8
Q ss_pred EEEEeccChhhhhccCCHH---HHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCC
Q psy13602 28 ILYADIVGFTAISSTYSAS---ELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGA 84 (107)
Q Consensus 28 vlf~di~~ft~l~~~~~~~---~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~ 84 (107)
|....|.||-+|+++++|. ++=.+=++++..+.+....+||.+..+-=|.++|+...
T Consensus 4 it~i~i~~Y~~WT~t~g~~RE~~lQ~lQs~l~~~l~~~~~~~~g~~f~~R~D~~ia~tng 63 (268)
T 2qv6_A 4 ITVIQIDNYGPWTVTPNPRRESDLQALQSRLYADLNLMFGAHKGLVFYTRFDNLIAITNG 63 (268)
T ss_dssp EEEEEETTHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHTTTCEEECTTSSEEEEECTT
T ss_pred EEEEEEcCcccccCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCEEeecccceEEEEeCC
Confidence 4567899999999999874 23334478899999999999999999888999999743
No 29
>2xgv_A PSIV capsid N-terminal domain; retroviral capsid, viral protein; 2.00A {Microcebus murinus}
Probab=65.86 E-value=2.5 Score=26.88 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.5
Q ss_pred ccChhhhhccCCHHHHHHHHHH
Q psy13602 33 IVGFTAISSTYSASELVKILNE 54 (107)
Q Consensus 33 i~~ft~l~~~~~~~~~~~~Ln~ 54 (107)
|..|+.||+.+.|+++-.+||-
T Consensus 37 ipmF~AlSeg~Tp~Dln~mLn~ 58 (142)
T 2xgv_A 37 ITYWGLISQDLSSREQVQLLEV 58 (142)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHH
T ss_pred hHHHHHHhCCCChHHHHHHHHh
Confidence 4579999999999999998885
No 30
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=63.36 E-value=28 Score=27.64 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=50.4
Q ss_pred ccEEEEEEeccChhhhhcc--------------------------CCH---HHHHHHHHHHHH-HHHHHHHhcCcEEEEE
Q psy13602 24 NTWRILYADIVGFTAISST--------------------------YSA---SELVKILNELFA-RFDRLSEKYQQLRIKI 73 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~--------------------------~~~---~~~~~~Ln~~~~-~~~~~i~~~~g~~~k~ 73 (107)
+-.+||-.|.-+.-.+... .+| ..+-+.|+.|+. .+..++ +++|+++-.
T Consensus 414 ~YyAvL~mDGD~MGk~lsg~~~~~~~~~~h~~i~e~l~~~~~~k~~TpsrhaaLSRaL~~Ff~~~V~~Iv-k~~G~vIYa 492 (693)
T 3ung_C 414 KYYAILVMDGDDMGKVISGEVLGEISTRIHPNIRDYVEIPEAKYYSTPQVHVAISQALANFSIREVRSVV-KDEGLLIYA 492 (693)
T ss_dssp CEEEEEEEEESSCC--------------------------------CHHHHHHHHHHHHHHHHTHHHHHH-TTSSEEEEE
T ss_pred CeEEEEEcccccHHHHhcCCCcccchhhcchhhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhCcEEEEE
Confidence 4478888888776554432 122 356677899886 466666 699999999
Q ss_pred eCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHh
Q psy13602 74 LGDCYYCISGAPKERPDHAILSVHMGLSMVKAI 106 (107)
Q Consensus 74 iGD~~ma~~g~~~~~~~~a~~a~~~Al~~~~~i 106 (107)
=||.++++.. ...|.++|.++++..
T Consensus 493 GGDDfL~llP--------~d~AlelAe~LRe~F 517 (693)
T 3ung_C 493 GGDDVLAILP--------VDKALEVAYKIRKEF 517 (693)
T ss_dssp CSSEEEEEEE--------HHHHHHHHHHHHHHH
T ss_pred cCceEEEEee--------HHHHHHHHHHHHHHH
Confidence 9999999984 245777787776653
No 31
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A {Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D* 1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C 2jpr_A* 1m9d_C 4dga_C ...
Probab=62.15 E-value=3.3 Score=26.45 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.0
Q ss_pred ccChhhhhccCCHHHHHHHHHH
Q psy13602 33 IVGFTAISSTYSASELVKILNE 54 (107)
Q Consensus 33 i~~ft~l~~~~~~~~~~~~Ln~ 54 (107)
|..|+.||+.+.|+++-.+||.
T Consensus 38 ipmFsALSeg~TP~Dln~mLn~ 59 (145)
T 2xde_A 38 IPMFSALSEGATPQDLNTMLNT 59 (145)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHT
T ss_pred hHHHHHHHcccCcHHHHHHHHh
Confidence 4569999999999999888874
No 32
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=59.69 E-value=3.8 Score=26.09 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.3
Q ss_pred ccChhhhhccCCHHHHHHHHHH
Q psy13602 33 IVGFTAISSTYSASELVKILNE 54 (107)
Q Consensus 33 i~~ft~l~~~~~~~~~~~~Ln~ 54 (107)
|..|+.||+.+.|.++-.+||.
T Consensus 36 ipmFsALSegaTP~Dln~mLn~ 57 (144)
T 2wlv_A 36 VPGFQALSEGCTPYDINQMLNC 57 (144)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHT
T ss_pred hHHHHHHhcccCcHHHHHHHHh
Confidence 4579999999999999988884
No 33
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=59.59 E-value=9.6 Score=26.50 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=41.2
Q ss_pred cCCCCChhhhhhcCCCCCCccccEEEE----EEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEE
Q psy13602 3 NYDCGDVVLIEANASSCPCSQNTWRIL----YADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLR 70 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vtvl----f~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~ 70 (107)
.|..||...+.+.-. .-....|.|= |-|+.||-+-.-.++|+|+...+-.-...+...+...|+.+
T Consensus 31 GfHAGDp~~M~~Tv~--lA~~~gV~IGAHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~l 100 (252)
T 1xw8_A 31 GFHAGDAQIMQACVR--EAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVM 100 (252)
T ss_dssp SSSSCCHHHHHHHHH--HHHHHTCEEEEECCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cccCCCHHHHHHHHH--HHHHcCCeeecCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 355565554443111 1113345543 89999999999999999999999999999999999998764
No 34
>2xgu_A Relik capsid N-terminal domain; viral protein, retroviral capsid; 1.50A {Oryctolagus cuniculus} PDB: 2xgy_A
Probab=58.24 E-value=4.2 Score=26.08 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.2
Q ss_pred ccChhhhhccCCHHHHHHHHHH
Q psy13602 33 IVGFTAISSTYSASELVKILNE 54 (107)
Q Consensus 33 i~~ft~l~~~~~~~~~~~~Ln~ 54 (107)
|..|+.||+.+.|+|+-.+||.
T Consensus 37 ipmFsAlSeg~TP~Din~mLn~ 58 (149)
T 2xgu_A 37 ITYFGVISINFTSVDINMLLNV 58 (149)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCChHHHHHHHHh
Confidence 4569999999999999988885
No 35
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=57.57 E-value=11 Score=26.32 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=48.1
Q ss_pred cCCCCChhhhhhcCCCCCCccccEEEE----EEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEE
Q psy13602 3 NYDCGDVVLIEANASSCPCSQNTWRIL----YADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLR 70 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vtvl----f~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~ 70 (107)
.|..||...+.+.-. .-...+|.|= |-|+.||-+-.-.++|+|+...+-.-...+...+..+|+.+
T Consensus 36 GfHAGDp~~M~~tv~--lA~~~gV~IGAHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~l 105 (255)
T 1v6t_A 36 GWHAGDPLVMRKTVR--LAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLEL 105 (255)
T ss_dssp SSSSCCHHHHHHHHH--HHHHTTCEEEEECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cccCCCHHHHHHHHH--HHHHcCCeEecCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 355565544443111 1123345544 89999999999999999999999999999999999998765
No 36
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=54.42 E-value=10 Score=26.42 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=47.8
Q ss_pred cCCCCChhhhhhcCCCCCCccccEEEE----EEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEE
Q psy13602 3 NYDCGDVVLIEANASSCPCSQNTWRIL----YADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLR 70 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vtvl----f~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~ 70 (107)
.|..||...+.+.-. .-....|.|= |-|+.||-+-.-.++|+|+...+-.-...+...+..+|+.+
T Consensus 42 GfHAGDp~~M~~Tv~--lA~~~gV~IGAHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~l 111 (252)
T 2x5e_A 42 GFHAGDPLTMRRAVE--LAVRHGVSIGAHPAYPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCRSLGTQV 111 (252)
T ss_dssp SSSSCCHHHHHHHHH--HHHHTTCEEEEECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cccCCCHHHHHHHHH--HHHHcCCeeecCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 355565544443111 1123345554 89999999999999999999999999999999999998754
No 37
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=54.17 E-value=10 Score=26.36 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=47.7
Q ss_pred cCCCCChhhhhhcCCCCCCccccEEEE----EEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEE
Q psy13602 3 NYDCGDVVLIEANASSCPCSQNTWRIL----YADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLR 70 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vtvl----f~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~ 70 (107)
.|..||...+.+.-. .-...+|.|= |-|+.||-+-.-.++|+|+...+-.-...+...+..+|+.+
T Consensus 36 GfHAGDp~~M~~tv~--lA~~~gV~IGAHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~G~~l 105 (250)
T 2dfa_A 36 GFHGGSPGRILEAVR--LAKAHGVAVGAHPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPL 105 (250)
T ss_dssp SSSSCCHHHHHHHHH--HHHHTTCEEEEECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cccCCCHHHHHHHHH--HHHHcCCeEecCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 355565544443111 1123345544 89999999999999999999999999999999999998754
No 38
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.10 E-value=38 Score=19.87 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=27.1
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHHHHH
Q psy13602 40 SSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILSVH 97 (107)
Q Consensus 40 ~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~a~~ 97 (107)
.....++++-.-|.+ +..+|||.+++..|---.+.| ...+.|.+|++
T Consensus 18 ~~~~~~~~lk~~L~~-------lF~~yGG~Vl~VtgG~AfV~F----~~~esA~~A~~ 64 (96)
T 2diu_A 18 PANKDGKSVSNRLRR-------LSDNCGGKVLSITGCSAILRF----INQDSAERAQK 64 (96)
T ss_dssp CTTSCHHHHHHHHHH-------HHHTTTCCEEECCTTCEEEEE----SSHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH-------HHHHcCCeeEEEecCEEEEEE----CCHHHHHHHHH
Confidence 346666665444444 446788888887773334445 33455555543
No 39
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=47.88 E-value=14 Score=19.79 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=20.5
Q ss_pred EEeccChhhhhccCCHHHHHHHHHHHH
Q psy13602 30 YADIVGFTAISSTYSASELVKILNELF 56 (107)
Q Consensus 30 f~di~~ft~l~~~~~~~~~~~~Ln~~~ 56 (107)
|.||..|+.-..- +.+++..+|+++-
T Consensus 25 ildI~~~a~kygV-~kdeV~~~LrrLe 50 (59)
T 2xvc_A 25 FLDIEHFSKVYGV-EKQEVVKLLEALK 50 (59)
T ss_dssp EEEHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred EEeHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6788888876654 8999999998864
No 40
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.82 E-value=54 Score=19.20 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=20.6
Q ss_pred HHHHhcC-cEEEEEeCcEEEEEeCCCCCCchHHHHHH
Q psy13602 61 RLSEKYQ-QLRIKILGDCYYCISGAPKERPDHAILSV 96 (107)
Q Consensus 61 ~~i~~~~-g~~~k~iGD~~ma~~g~~~~~~~~a~~a~ 96 (107)
+....|| ...+|+++|...+.| ...+.|.+|+
T Consensus 43 ~~F~~~G~Vilvr~v~d~~fVtF----~d~~sAl~AI 75 (95)
T 1ufw_A 43 QTLGSYGTIVLVRINQGQMLVTF----ADSHSALSVL 75 (95)
T ss_dssp HHHHHHSCCSEEEEETTEEEEEC----SCSHHHHHHH
T ss_pred HHHHHCCCEEEEEEecCcEEEEE----cChHHHHHHH
Confidence 3334455 567899999988888 3344454444
No 41
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=40.33 E-value=90 Score=21.60 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=31.5
Q ss_pred cccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHh--cCcEEEEEeCcE
Q psy13602 23 QNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEK--YQQLRIKILGDC 77 (107)
Q Consensus 23 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~--~~g~~~k~iGD~ 77 (107)
.+.+|+..-...||. -+++|+-.+++-+-..+.+.+.. ..+..++++||-
T Consensus 69 I~~lTlYaFStENwk-----Rp~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 120 (256)
T 4h8e_A 69 VKYLTLYAFSTENWS-----RPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFT 120 (256)
T ss_dssp CSEEEEEEEETTGGG-----SCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCG
T ss_pred CCEEEEEEEchhhhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEecCc
Confidence 456787777777773 37777666665555555554432 245668999984
No 42
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=38.02 E-value=93 Score=21.09 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=34.6
Q ss_pred cccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEeCcE
Q psy13602 23 QNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKY--QQLRIKILGDC 77 (107)
Q Consensus 23 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~--~g~~~k~iGD~ 77 (107)
.+.+|+..-...||.+ +++|+-.+++-+-..+.+.+.+. .+..++++||-
T Consensus 51 I~~lTlYaFStENw~R-----p~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 102 (225)
T 3ugs_B 51 ISNLSLFAFSTENWKR-----PKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDL 102 (225)
T ss_dssp CCEEEEEEEESGGGGS-----CHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEEESCG
T ss_pred CCEEEEEEEcccccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh
Confidence 4567877777777733 77887777666666666655443 56789999985
No 43
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=37.70 E-value=6.9 Score=28.42 Aligned_cols=60 Identities=8% Similarity=0.135 Sum_probs=0.0
Q ss_pred cccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeC
Q psy13602 23 QNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISG 83 (107)
Q Consensus 23 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g 83 (107)
....++++.||.+|..+-+..+.+.-=.+|..+-..+.+.+.. +..+-++-||.+.++..
T Consensus 42 ~~~~~l~~idid~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~-~~~v~R~ggdeF~ill~ 101 (437)
T 3hvb_A 42 RKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALFK 101 (437)
T ss_dssp -------------------------------------------------------------
T ss_pred CCceEEEEEEcCcHHHHHHhhCchhHHHHHHHHHHHHHHhCCC-CceEEEecCCEEEEEeC
Confidence 4567899999999999988887765555666655555555543 34556677888776653
No 44
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.49 E-value=72 Score=18.47 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=17.9
Q ss_pred HHHHHHhcC-cEEEEEeCcEEEEEe
Q psy13602 59 FDRLSEKYQ-QLRIKILGDCYYCIS 82 (107)
Q Consensus 59 ~~~~i~~~~-g~~~k~iGD~~ma~~ 82 (107)
+.+....|| ...+|++.|...+.|
T Consensus 32 L~~~F~~~G~Vi~vr~~~d~~fVtF 56 (91)
T 2dnr_A 32 LLQQFASFGEVILIRFVEDKMWVTF 56 (91)
T ss_dssp HHHHHHTTCCEEEEEECSSSEEEEE
T ss_pred HHHHHHhCCCeEEEEEecCCEEEEE
Confidence 334445576 678899999988888
No 45
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=32.03 E-value=74 Score=18.47 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=21.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHh
Q psy13602 41 STYSASELVKILNELFARFDRLSEK 65 (107)
Q Consensus 41 ~~~~~~~~~~~Ln~~~~~~~~~i~~ 65 (107)
..++|+++...|...+..|..++.+
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~ 66 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQ 66 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998887765
No 46
>1eia_A EIAV capsid protein P26; viral capsid, HIV, lentivirus, viral protein; 2.70A {Equine infectious anemia virus} SCOP: a.28.3.1 a.73.1.1 PDB: 2eia_A
Probab=31.20 E-value=20 Score=24.14 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.6
Q ss_pred cChhhhhccCCHHHHHHHHHH
Q psy13602 34 VGFTAISSTYSASELVKILNE 54 (107)
Q Consensus 34 ~~ft~l~~~~~~~~~~~~Ln~ 54 (107)
..|+.|++.+.|.++-.+||-
T Consensus 24 p~f~alse~~tp~Din~mLn~ 44 (207)
T 1eia_A 24 NLFGILSVDCTSEEMNAFLDV 44 (207)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHh
Confidence 359999999999999999886
No 47
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=29.60 E-value=21 Score=25.27 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.8
Q ss_pred ccChhhhhccCCHHHHHHHHHH
Q psy13602 33 IVGFTAISSTYSASELVKILNE 54 (107)
Q Consensus 33 i~~ft~l~~~~~~~~~~~~Ln~ 54 (107)
|.-|+.||+.+.|+|+-.+||.
T Consensus 169 IpmFsALSeg~Tp~Dln~mLn~ 190 (289)
T 1l6n_A 169 IPMFSALSEGATPQDLNTMLNT 190 (289)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcccChHHHHHHHHh
Confidence 3458999999999999988885
No 48
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=27.80 E-value=49 Score=19.03 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=33.1
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcE----EEEEeCC
Q psy13602 36 FTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDC----YYCISGA 84 (107)
Q Consensus 36 ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~----~ma~~g~ 84 (107)
+....-..+|+..-.++-.-=..+.++.+++||..+.+--|+ .+-++|.
T Consensus 16 ~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~ 68 (95)
T 2ctj_A 16 IAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGP 68 (95)
T ss_dssp SCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESC
T ss_pred cEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcC
Confidence 333344557777766666666778889999977677777666 6666653
No 49
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=27.38 E-value=1.4e+02 Score=20.01 Aligned_cols=48 Identities=8% Similarity=0.207 Sum_probs=29.4
Q ss_pred ccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCc
Q psy13602 24 NTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGD 76 (107)
Q Consensus 24 ~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD 76 (107)
+.+|+.--..-+| +-+++|+-.+++-+...+.+.+....+..++++||
T Consensus 49 ~~lTlYaFSteN~-----kRp~~Ev~~Lm~l~~~~l~~~~~~~~~vrv~~iG~ 96 (227)
T 2vg0_A 49 ELATVYLLSTENL-----QRDPDELAALIEIITDVVEEICAPANHWSVRTVGD 96 (227)
T ss_dssp SEEEEEEEETGGG-----GSCHHHHHHHHHHHHHHHHHHTCTTTCCEEEEESC
T ss_pred CEEEEEeeccccc-----CCCHHHHHHHHHHHHHHHHHHhccccCeEEEecCC
Confidence 4566543344444 33777876666666666666553345677899997
No 50
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=25.38 E-value=1e+02 Score=17.72 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=26.8
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHHHhcCcEE
Q psy13602 40 SSTYSASELVKILNELFARFDRLSEKYQQLR 70 (107)
Q Consensus 40 ~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~ 70 (107)
....+.+.....|++....+.+.++++||.-
T Consensus 58 ~~~~D~k~ge~~L~~ai~~i~~~i~~~gG~~ 88 (93)
T 2qn6_B 58 VVGTNPKEASEALNQIISNLIKIGKEENVDI 88 (93)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 3456888999999999999999999999863
No 51
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=21.99 E-value=39 Score=17.46 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=12.9
Q ss_pred eccChhhhhccC--CHHHHHHHH
Q psy13602 32 DIVGFTAISSTY--SASELVKIL 52 (107)
Q Consensus 32 di~~ft~l~~~~--~~~~~~~~L 52 (107)
-|++|.+++..+ +|+.+.+++
T Consensus 10 vi~Nf~~Ia~~L~R~p~hv~ky~ 32 (52)
T 1k8b_A 10 IIRNFRELAKAVNRDEEFFAKYL 32 (52)
T ss_dssp EECCHHHHHHHHHTCHHHHHHHH
T ss_pred EEECHHHHHHHHCCCHHHHHHHH
Confidence 356777766654 677665554
No 52
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=21.94 E-value=14 Score=17.88 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=17.3
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHHHH
Q psy13602 36 FTAISSTYSASELVKILNELFARFDR 61 (107)
Q Consensus 36 ft~l~~~~~~~~~~~~Ln~~~~~~~~ 61 (107)
|+.-.-+..|++++.+..+||+.+.+
T Consensus 14 ~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 14 YTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 44434444677888888888887653
No 53
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.05 E-value=1.2e+02 Score=17.13 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCC
Q psy13602 52 LNELFARFDRLSEKYQQLRIKILGDCYYCISGA 84 (107)
Q Consensus 52 Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~ 84 (107)
..+|......+++++||..+- -| .....-|.
T Consensus 19 y~~Y~~~~~~~l~~~GG~~l~-rg-~~~~lEG~ 49 (94)
T 3lo3_A 19 LQQYGARVASTLAKYSGEVLV-KG-SVEQLHGK 49 (94)
T ss_dssp HHHHHHHHHHHHHTTTCEEEE-EE-ECEEEESC
T ss_pred HHHHHHHHHHHHHHcCCEEEE-Ec-ccccccCC
Confidence 678889999999999997654 34 45555554
No 54
>3h47_A Ca, capsid protein P24; hexamer, engineered disulfide bonds, viral protein; 1.90A {Human immunodeficiency virus type 1} PDB: 3h4e_A 2lf4_A 3mge_A 3p05_A 3p0a_A 3dik_A 3nte_A 1e6j_P
Probab=20.61 E-value=63 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.2
Q ss_pred cChhhhhccCCHHHHHHHHHH
Q psy13602 34 VGFTAISSTYSASELVKILNE 54 (107)
Q Consensus 34 ~~ft~l~~~~~~~~~~~~Ln~ 54 (107)
..|+.+++.+.|+|+-.+||.
T Consensus 38 p~f~alse~~tp~D~n~mln~ 58 (231)
T 3h47_A 38 PMFSALSCGATPQDLNTMLNT 58 (231)
T ss_dssp HHHHHHTTTCCHHHHHHHHHT
T ss_pred HHHHHhhCCCCHHHHHHHHHh
Confidence 458999999999999988874
Done!