RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13602
(107 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 101 bits (253), Expect = 2e-28
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADIVGFTA+SS +S ELV++LN+L+ RFD L +K+ ++K +GD Y SG P+
Sbjct: 11 ILFADIVGFTALSSRHSPEELVRLLNDLYTRFDELLDKHGVYKVKTIGDAYMAASGLPEP 70
Query: 88 RPDHAILSVHMGLSMVKAIK 107
P HA M L M++AIK
Sbjct: 71 SPAHAQTLAEMALDMLEAIK 90
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 91.9 bits (229), Expect = 7e-25
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+L+ADIVGFTA+S ELV++LNE F+ FD + E++ K +GD + G P
Sbjct: 4 VLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGA 63
Query: 88 RPDHAILSVHMGLSMVKAIK 107
DHA +V L M +A+
Sbjct: 64 HEDHAERAVRAALEMQEALA 83
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 82.7 bits (205), Expect = 4e-21
Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL++DIVGFT++ ST + ++V +LN+L++RFD++ +++ ++K +GD Y SG P+E
Sbjct: 39 ILFSDIVGFTSLCSTSTPEQVVNLLNDLYSRFDQIIDRHGGYKVKTIGDAYMVASGLPEE 98
Query: 88 R-PDHAILSVHMGLSMVKAIK 107
DHA L L MV+ +K
Sbjct: 99 ALVDHAELIADEALDMVEELK 119
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 75.1 bits (185), Expect = 8e-19
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADIVGFT+++ E ++LNEL RFD L + L+IK +GD + +SG
Sbjct: 4 ILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSG---- 59
Query: 88 RPDHAILSVHMGLSMVKAI 106
DH +V M +A+
Sbjct: 60 -LDHPAAAVAFAEDMREAV 77
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 58.3 bits (141), Expect = 1e-11
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+L+ADIVG T +S + LV++LN F + ++ +K +GD + + G P
Sbjct: 49 LLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFIGDGFLAVFGRPSP 108
Query: 88 RPDHAILSVHMGLSMVKAIK 107
D ++ + L++ +
Sbjct: 109 LEDAVACALDLQLALRNPLA 128
>gnl|CDD|206035 pfam13864, Enkurin, Calmodulin-binding. This is a family of
apparent calmodulin-binding proteins found at high
levels in the testis and vomeronasal organ and at lower
levels in certain other tissues. Enkurin is a scaffold
protein that binds PI3 kinase to sperm transient
receptor potential (canonical) (TRPC) channels. The
mammalian transient receptor potential (canonical)
channels are the primary candidates for the Ca(2+)
entry pathway activated by the hormones, growth
factors, and neurotransmitters that exert their effect
through activation of PLC. Calmodulin binds to the
C-terminus of all TRPC channels, and dissociation of
calmodulin from TRPC4 results in profound activation of
the channel.
Length = 98
Score = 28.7 bits (65), Expect = 0.26
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 44 SASELVKILNELFARFDRLSEKYQQL 69
S E +++LN L +D L+++YQ+L
Sbjct: 38 SEEERLELLNGLKKNWDELNKEYQKL 63
>gnl|CDD|220331 pfam09660, DUF2397, Protein of unknown function (DUF2397).
Proteins in this entry are encoded within a conserved
gene four-gene neighborhood found sporadically in a
phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Betaproteobacteria).
Length = 478
Score = 29.6 bits (67), Expect = 0.30
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQQ 68
++ A+E+ ++ N+LF F+ L++ Q
Sbjct: 132 EMAEEGDAAEVYRLWNDLFEDFESLAQNAQD 162
>gnl|CDD|218850 pfam05999, Herpes_U5, Herpesvirus U5-like family. This family of
Herpesvirus includes U4, U5 and UL27.
Length = 447
Score = 28.2 bits (63), Expect = 0.82
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 48 LVKILNELFARFDRLSEKYQQLRIKILGDC---YYCISGAPKERPDHA 92
L ++L+ LF + D L + ++ + +LG C C
Sbjct: 47 LCELLSSLFLQLDGLLNRLEKESLLVLGGCLPNPVCRELGVAYPNSDD 94
>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB;
Validated.
Length = 376
Score = 27.3 bits (61), Expect = 1.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 42 TYSASELVKIL----NELFAR---FDRLSEKYQQLRIKILGDCYYCISGAP 85
A+E +K+L + L R FD L+ ++++LR+ C C G P
Sbjct: 311 LLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRELRLPPDPHCPVCAPGRP 361
>gnl|CDD|223714 COG0641, AslB, Arylsulfatase regulator (Fe-S oxidoreductase)
[General function prediction only].
Length = 378
Score = 27.0 bits (60), Expect = 1.8
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 16/87 (18%)
Query: 6 CGDVVLIEANASSCPCSQNTWRILYADIVGFTA-ISSTYSASELVKILNELFARFDRLSE 64
CGD +++E N C D + + L ++L + +
Sbjct: 257 CGDELVVEPNGDIYSC----------DHFVYPEYKLGNIHETSLAQMLAS--PQQQQFGA 304
Query: 65 KYQQLRIKILGDCYY---CISGAPKER 88
Q+ C + C G PK R
Sbjct: 305 DKQKGLSAKCQRCEWLFLCHGGCPKHR 331
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 26.9 bits (59), Expect = 1.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 52 LNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILSVHMGLS 101
+N ++ +D +Y K DC+ C+ A D IL +H GLS
Sbjct: 132 INRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAA--LIDEKILCMHGGLS 179
>gnl|CDD|239359 cd03061, GST_N_CLIC, GST_N family, Chloride Intracellular Channel
(CLIC) subfamily; composed of CLIC1-5, p64, parchorin
and similar proteins. They are auto-inserting,
self-assembling intracellular anion channels involved
in a wide variety of functions including regulated
secretion, cell division and apoptosis. They can exist
in both water-soluble and membrane-bound states, and
are found in various vesicles and membranes.
Biochemical studies of the C. elegans homolog, EXC-4,
show that the membrane localization domain is present
in the N-terminal part of the protein. The structure of
soluble human CLIC1 reveals that it is monomeric and it
adopts a fold similar to GSTs, containing an N-terminal
domain with a TRX fold and a C-terminal alpha helical
domain. Upon oxidation, the N-terminal domain of CLIC1
undergoes a structural change to form a non-covalent
dimer stabilized by the formation of an intramolecular
disulfide bond between two cysteines that are far apart
in the reduced form. The CLIC1 dimer bears no
similarity to GST dimers. The redox-controlled
structural rearrangement exposes a large hydrophobic
surface, which is masked by dimerization in vitro. In
vivo, this surface may represent the docking interface
of CLIC1 in its membrane-bound state. The two cysteines
in CLIC1 that form the disulfide bond in oxidizing
conditions are essential for dimerization and chloride
channel activity, however, in other subfamily members,
the second cysteine is not conserved.
Length = 91
Score = 26.2 bits (58), Expect = 1.9
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 12 IEANASSCPCSQNTWRILYADIVGFT 37
+ +CP Q + +L+ V F
Sbjct: 15 DGESIGNCPFCQRLFMVLWLKGVVFN 40
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 26.8 bits (60), Expect = 2.5
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 28/89 (31%)
Query: 7 GDVVLIEANASSCPCSQNTWR-------ILYADIVGFTAISSTYSASELVKILNE----- 54
GDVV + S N+ L A + +A + +Y+ EL L
Sbjct: 35 GDVVAL--------ISPNSIEFPPVFLGCLAAGGI-VSAANPSYTPDELAHQLKISKPKL 85
Query: 55 LFA---RFDRLSEKYQQL----RIKILGD 76
+F D++ E ++L RI +L
Sbjct: 86 IFCDPDELDKVKEAAKELGPVVRIIVLDS 114
>gnl|CDD|226185 COG3659, OprB, Carbohydrate-selective porin [Cell envelope
biogenesis, outer membrane].
Length = 439
Score = 26.7 bits (59), Expect = 2.7
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 29 LYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKER 88
L A + AI++ + S +L +L + RL EK L+++ +G+ + G +
Sbjct: 17 LAAGALLLAAIAAAPAFSNSKWMLGDLGGKLTRLLEKGVDLKLEYMGEVAANLDGGTDHK 76
Query: 89 P----DHAILSVHMGL 100
D L + L
Sbjct: 77 TGRYTDQFALGADLDL 92
>gnl|CDD|217899 pfam04108, APG17, Autophagy protein Apg17. Apg17 is required for
activating Apg1 protein kinases.
Length = 408
Score = 26.5 bits (59), Expect = 2.7
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 21 CSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLR 70
+N ++L + I + + S V + NEL A RL +LR
Sbjct: 48 GLKNQLKLLEKIVRSTALIRTEWGQSVFVNLQNELDAADARLESTLDRLR 97
>gnl|CDD|218371 pfam04999, FtsL, Cell division protein FtsL. In Escherichia
coli, nine gene products are known to be essential for
assembly of the division septum. One of these, FtsL, is
a bitopic membrane protein whose precise function is
not understood. It has been proposed that FtsL
interacts with the DivIC protein pfam04977, however
this interaction may be indirect.
Length = 97
Score = 25.7 bits (57), Expect = 3.6
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 21 CSQNTWRILYADIVGFTAIS---STYSASELVKILNELFARFDRLSEKYQQLRI 71
S +L +V +A+ ST+ +L L +L DRL ++ L +
Sbjct: 10 LSHGKLLLLLLLLVLVSAVGVVYSTHQTRQLTSELQKLLQERDRLEIEWGNLLL 63
>gnl|CDD|237471 PRK13689, PRK13689, hypothetical protein; Provisional.
Length = 75
Score = 24.9 bits (55), Expect = 4.8
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQ---QLRIKILGDC 77
A S YS ++ ++L EL A EK++ L + +LG+
Sbjct: 2 AQQSKYSDEQVEQLLAELLAVL----EKHKAPTDLSLMVLGNM 40
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 25.8 bits (57), Expect = 5.0
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 38 AISSTYSASELV------KILNELFARFDRLSEKY-QQLRIKILGDCYYCISGAPKERPD 90
AIS T V + L A +DR +E+ ++LR + G Y I+G P
Sbjct: 68 AISITSVGESGVLVDADGEPLYPAIAWYDRRTEEEAEELRKQDPGLAIYEITGL----PP 123
Query: 91 HAILSV 96
I S+
Sbjct: 124 DPIYSL 129
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP,
also known as RhoGAP-1, contains a C-terminal RhoGAP
domain and an N-terminal Sec14 domain which binds
phosphatidylinositol 3,4,5-trisphosphate
(PtdIns(3,4,5)P3). It is ubiquitously expressed and
preferentially active on Cdc42. This subgroup also
contains closely related ARHGAP8. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 195
Score = 25.8 bits (57), Expect = 5.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 29 LYADIVGFTAISSTYSASELVKILNEL 55
LY DIVGF + + ++L L
Sbjct: 98 LYDDIVGFLNVDKEERVERVKQLLQTL 124
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 25.0 bits (55), Expect = 6.9
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 31 ADIVGFTAISSTYSASELVKILNELFARFDRLSEK-------YQQLRIKILGD 76
+D+ AIS T+ + K L+EL L EK +L +LGD
Sbjct: 93 SDLPTHPAISRTFKS----KTLSELALEAIALIEKEQNNLNKLNKLLQVLLGD 141
>gnl|CDD|240463 cd12883, SPRY_RING, SPRY domain at N-terminus of Really
Interesting New Gene (RING) finger domain. This SPRY
domain is found at the N-terminus of RING finger
domains which are present in a variety of functionally
distinct proteins and known to be involved in
protein-protein and protein-DNA interactions.
RING-finger domain is a type of Zn-finger that binds
two Zn atoms and is identified in proteins with a wide
range of functions such as viral replication, signal
transduction, and development.
Length = 121
Score = 25.0 bits (55), Expect = 7.7
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 11 LIEANASSCPCSQNTWRILYADIVGF 36
LI NA S P + W+ D+VG
Sbjct: 49 LIWYNAESRPHTHPRWK--PGDVVGC 72
>gnl|CDD|150245 pfam09506, Salt_tol_Pase, Glucosylglycerol-phosphate phosphatase
(Salt_tol_Pase). Proteins in this family are
glucosylglycerol-phosphate phosphatases, with the gene
symbol stpA (Salt Tolerance Protein A). A motif
characteristic of acid phosphatases is found, but
otherwise this family shows little sequence similarity
to other phosphatases. This enzyme acts on the
glucosylglycerol phosphate, product of glucosylglycerol
phosphate synthase and immediate precursor of the
osmoprotectant glucosylglycerol.
Length = 381
Score = 25.3 bits (56), Expect = 7.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 52 LNELFARFDRLSEKYQQLRIKI 73
LN LF+ EK +QL+ +
Sbjct: 151 LNSLFSLVPDDVEKQRQLQQML 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.411
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,218,143
Number of extensions: 425867
Number of successful extensions: 681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 42
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.1 bits)