RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13602
(107 letters)
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 140 bits (356), Expect = 9e-44
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADI GFT+++S +A ELV LNELFARFD+L+ + LRIKILGDCYYC+SG P+
Sbjct: 37 ILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEA 96
Query: 88 RPDHAILSVHMGLSMVKAIK 107
R DHA V MG+ M++AI
Sbjct: 97 RADHAHCCVEMGMDMIEAIS 116
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 111 bits (281), Expect = 1e-32
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+L+ADIVGFT +S+ + ++LV+ L+ L++ FD L +++ +I++ GD Y +SG P+
Sbjct: 13 VLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRP 72
Query: 88 RPDHAILSVHMGLSMVKAIK 107
RPDH L M
Sbjct: 73 RPDHTQALADFALDMTNVAA 92
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 105 bits (263), Expect = 9e-30
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+L++DIVGFTAI S S +++ +LN L+ RFD+ + +++ +GD Y G KE
Sbjct: 17 MLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKE 76
Query: 88 RPDHAILSVHMGLSMVKAIK 107
HA+ M L M++
Sbjct: 77 SDTHAVQIALMALKMMELSD 96
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 95.5 bits (238), Expect = 5e-26
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 28 ILYADIVGFTAISSTYSAS----ELVKILNELFARFDRLSEKYQQLR---IKILGDCYYC 80
IL++ IVGF A S +++ ++V +LN+L+ RFD L++ + ++ +GD Y
Sbjct: 15 ILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMT 74
Query: 81 ISGAPKERPDHAILSVHMGLSMVKAIK 107
+SG P+ HA H+ L M++
Sbjct: 75 VSGLPEPCIHHARSICHLALDMMEIAG 101
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 93.9 bits (234), Expect = 8e-26
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQL-RIKILGDCYYCISGAPK 86
+L++DIVGFT I+S S E+ +L+EL+ RFD E+Y QL +++ +GD Y +
Sbjct: 12 VLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTV 71
Query: 87 ERPDHAILSVHMGLSMVKAIK 107
DHA + + L M +
Sbjct: 72 PCDDHADVLLEFALRMHEEAS 92
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 73.8 bits (182), Expect = 8e-18
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 28 ILYADIVGFTAISSTYSAS----ELVKILNELFARFDRLSEKYQQLR---IKILGDCYYC 80
+++A I F + + E +++LNE+ A FD L K + IK +G Y
Sbjct: 17 VMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMA 76
Query: 81 ISG-----------APKERPDHAILSVHMGLSMVKAIK 107
+G P+ + H V ++V +
Sbjct: 77 ATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLD 114
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 70.7 bits (174), Expect = 1e-16
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL +D+ GFT+ S + E+VK+LN F + + + + +GD + GAP
Sbjct: 17 ILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTS 76
Query: 88 RPDHAILSVHMGLSMVKAIK 107
+ D A+ +V G+ M A++
Sbjct: 77 QQDDALRAVACGVEMQLALR 96
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 72.3 bits (177), Expect = 2e-16
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLR-IKILGDCYYCISGAPK 86
+ +AD+VGFT + SA EL + L L+ + IK +GD + P
Sbjct: 218 VAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTAPP--VWFIKTIGDAVMLVCPDPA 275
Query: 87 ERPDHAI 93
D +
Sbjct: 276 PLLDTVL 282
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 64.1 bits (157), Expect = 5e-14
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL++DIVGFT +S+ + + ++LNE R + Q K +GD + GAP+E
Sbjct: 30 ILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEE 89
Query: 88 R--PDHAILSVHMGLSMVKAIK 107
+ ++ M+ A++
Sbjct: 90 MSPSEQVRRAIATARQMLVALE 111
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 62.9 bits (154), Expect = 8e-14
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+ ++DI GFT +S A L +LN +++ KY K +GDC G P
Sbjct: 12 VFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPST 71
Query: 88 R--PDHAILSVHMGLSMVKAIK 107
+ A+ +V MG++M K +K
Sbjct: 72 QGAKKDAVAAVSMGIAMRKHMK 93
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 62.9 bits (153), Expect = 2e-13
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+++ DI TA+ + + + L +Y+ +K +GD + S +P
Sbjct: 15 LIFTDIESSTALWAA-HPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSPFA 73
Query: 88 RPDHAILSVHMGLSM 102
A L
Sbjct: 74 AVQLAQELQLCFLHH 88
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 47.3 bits (113), Expect = 5e-08
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
I++ DIVG T ++ +L+ +++ + GD + +P
Sbjct: 20 IMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSPSA 79
Query: 88 RPDHAILSVHMGLSMVKAIK 107
++ +V A+
Sbjct: 80 -------AIACADDIVDAVA 92
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 43.0 bits (102), Expect = 2e-06
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL AD+ G++ + L + D + +K GD +
Sbjct: 10 ILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTAQA 69
Query: 88 RPDHAILSVHMGLSMVKAIK 107
++ L + +A++
Sbjct: 70 -------ALRCALEIQQAMQ 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.018
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 22/100 (22%)
Query: 29 LYADIVGFTA-ISSTYSASELVKILNELFARFDR----------------LSEKYQQLRI 71
L +G+ + + + ++LN F+ ++
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 72 KILGDCYY---CISGAPKERP-DHAIL-SVHMGLSMVKAI 106
K L Y ++ P ++ + A+ +V G + + AI
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.061
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 15/35 (42%)
Query: 64 EKYQQLR-----IKILGDCYYCISGAPKERPDHAI 93
EK Q L+ +K+ Y A P AI
Sbjct: 18 EK-QALKKLQASLKL-----Y----ADDSAPALAI 42
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 28.7 bits (65), Expect = 0.35
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 16/54 (29%)
Query: 7 GDVVLIEANASSCPCSQNT-------WRILYADIVGFTAISSTYSASELVKILN 53
+ + CS+N L+ + + Y+ ELV L
Sbjct: 77 DGRIAL--------CSENCEEFFIPVIAGLFIGVG-VAPTNEIYTLRELVHSLG 121
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 28.3 bits (64), Expect = 0.42
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 16/54 (29%)
Query: 7 GDVVLIEANASSCPCSQNT-------WRILYADIVGFTAISSTYSASELVKILN 53
+++ CS+N+ L+ + + Y+ EL+ +N
Sbjct: 75 NHRIVV--------CSENSLQFFMPVLGALFIGVA-VAPANDIYNERELLNSMN 119
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 27.3 bits (61), Expect = 1.1
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 16/54 (29%)
Query: 7 GDVVLIEANASSCPCSQNT-------WRILYADIVGFTAISSTYSASELVKILN 53
DVV++ N + TA + ++ +E+ K
Sbjct: 113 NDVVML--------LLPNCPEFVLSFLAASFRGAT-ATAANPFFTPAEIAKQAK 157
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 26.4 bits (59), Expect = 1.8
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 16/54 (29%)
Query: 7 GDVVLIEANASSCPCSQNT-------WRILYADIVGFTAISSTYSASELVKILN 53
GDV+++ ++ + + TA + + +EL K
Sbjct: 74 GDVIML--------FLPSSPEFVLAFLGASHRGAI-ITAANPFSTPAELAKHAK 118
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics,
P protein structure initiative, midwest center for
structural genomics; HET: DGT DTP; 2.40A {Enterococcus
faecalis} PDB: 2o6i_A*
Length = 480
Score = 26.6 bits (58), Expect = 1.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 63 SEKYQQLR-IKILGDCYYCISGAPKERPDHAILSVHMGLSMVKAIK 107
S + Q+LR IK LG + GA R H++ + + + +
Sbjct: 61 SAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEITRRICEIFQ 106
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 26.2 bits (58), Expect = 2.2
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 43 YSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCIS 82
+ +L++ + ++ ++ +E+ + + L D Y IS
Sbjct: 272 LALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSIS 311
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus
thermophilus} PDB: 2yz5_A 2z4g_A
Length = 267
Score = 26.2 bits (58), Expect = 2.6
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 52 LNELFARFDRLSEKYQQLRIKI-------LGDCYYCISGAPKERPDHAILSVH 97
L +R+ E+ Q L + I G + + D+ I SVH
Sbjct: 56 LPFYLLALERVRERAQDLYVGIGLEADFHPGTEGFLAQLLRRYPFDYVIGSVH 108
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 25.9 bits (56), Expect = 2.8
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 41 STYSASELVKILNELFARFDRLSEKYQ 67
+K E+ A+FD L KY
Sbjct: 281 KLDHEHAFIKHHQEIDAKFDELVRKYD 307
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 25.4 bits (56), Expect = 3.8
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 43 YSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCIS 82
YS+ ++V + ++ E + IK +G + I
Sbjct: 261 YSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRIL 300
>3rqi_A Response regulator protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET: PHD
CIT; 1.70A {Burkholderia pseudomallei}
Length = 184
Score = 25.3 bits (56), Expect = 4.2
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 84 APKERPDHAILSVHM----GLSMVKAIK 107
A E+ + + +H+ GLS++ +
Sbjct: 47 AGAEKFEFITVXLHLGNDSGLSLIAPLC 74
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural
genomics, PSI-2, protein structure initiative; NMR
{Vibrio parahaemolyticus} SCOP: a.284.1.1
Length = 83
Score = 24.4 bits (53), Expect = 5.6
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQ---QLRIKILGDC 77
I+S Y+ ++ KIL E+ EK+ +L + I G+
Sbjct: 2 PITSKYTDEQVEKILAEVALVL----EKHAASPELTLMIAGNI 40
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha,
northeast structural GEN consortium, NESG, structural
genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1
PDB: 2qti_A
Length = 80
Score = 24.4 bits (53), Expect = 5.6
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQ---QLRIKILGDC 77
AI S YS +++ ++ E+ EK++ L + LG+C
Sbjct: 2 AIQSKYSNTQVESLIAEILVVL----EKHKAPTDLSLMALGNC 40
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics,
PSI-2, protein structure initiative; NMR {Haemophilus
influenzae} SCOP: a.284.1.1
Length = 80
Score = 24.0 bits (52), Expect = 5.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQ---QLRIKILGDC 77
A S YS ++L I+N++ A EK++ L + LG+
Sbjct: 2 AQHSKYSDAQLSAIVNDMIAVL----EKHKAPVDLSLIALGNM 40
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural
genomics, PSI-2, protein initiative, northeast
structural genomics consortium, NESG; NMR {Escherichia
coli} SCOP: a.284.1.1
Length = 83
Score = 24.1 bits (52), Expect = 7.0
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQ---QLRIKILGDC 77
S YS ++ ++L EL EK++ L + +LG+
Sbjct: 2 PQISRYSDEQVEQLLAELLNVL----EKHKAPTDLSLMVLGNM 40
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer,
structural genomics, PSI, structure initiative; NMR
{Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Length = 76
Score = 23.7 bits (51), Expect = 7.4
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQ---QLRIKILGDC 77
I S YS + KI+ +L K + L + LG+
Sbjct: 2 PIVSKYSNERVEKIIQDLLDVL----VKEEVTPDLALMCLGNA 40
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 24.5 bits (54), Expect = 8.0
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 30 YADIVGFTAISSTYS-ASELVKILNELFARFDRLSEKYQQLR 70
+ D+ + ++ + L+ F L Y L
Sbjct: 455 WDDVTALVRTGEKITPDPAKAEVYDRLYRDFSAL---YATLH 493
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.411
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,638,009
Number of extensions: 82996
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 39
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.8 bits)