RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13602
(107 letters)
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
{Trypanosome (Trypanosoma brucei), different isoform
[TaxId: 5691]}
Length = 235
Score = 69.2 bits (168), Expect = 3e-16
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+++ DI TA+ + + + L +Y+ +K +GD + S +P
Sbjct: 15 LIFTDIESSTALWAA-HPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSPFA 73
Query: 88 RPDHAILSVHMGLSM 102
A L
Sbjct: 74 AVQLAQELQLCFLHH 88
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
familiaris) [TaxId: 9615]}
Length = 190
Score = 63.4 bits (153), Expect = 2e-14
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADI GFT+++S +A ELV LNELFARFD+L+ + LRIKILGDCYYC+SG P+
Sbjct: 17 ILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEA 76
Query: 88 RPDHAILSVHMGLSMVKAIK 107
R DHA V MG+ M++AI
Sbjct: 77 RADHAHCCVEMGMDMIEAIS 96
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina
platensis [TaxId: 118562]}
Length = 197
Score = 59.6 bits (143), Expect = 6e-13
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL++DIVGFT +S+ + + ++LNE R + Q K +GD + GAP+E
Sbjct: 10 ILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEE 69
Query: 88 RPDH 91
Sbjct: 70 MSPS 73
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 55.3 bits (132), Expect = 3e-11
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 28 ILYADIVGFTAISSTYSAS----ELVKILNELFARFDRLSEKYQ---QLRIKILGDCYYC 80
+++A I F + + E +++LNE+ A FD L K + +IK +G Y
Sbjct: 9 VMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMA 68
Query: 81 ISG-----------APKERPDHAILSVHMGLSMVKAIK 107
+G P+ + H V ++V +
Sbjct: 69 ATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLD 106
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 95
Score = 27.0 bits (60), Expect = 0.20
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 43 YSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKER 88
+ +L++ + ++ ++ +E+ + + L D Y IS ++
Sbjct: 34 LALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQ 79
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 91
Score = 26.3 bits (58), Expect = 0.48
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 39 ISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCIS 82
+ S +SA+ +V L+E + D ++ +L ++
Sbjct: 29 MKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLN 72
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354,
soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Length = 53
Score = 24.3 bits (52), Expect = 1.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 32 DIVGFTAISSTYSASELVKILNELFARFDRLSEKYQ 67
D F ++ ++ S S V+ LNEL A RL + Y+
Sbjct: 5 DRAKFESMINSPSKSVFVRNLNELEALAVRLGKSYR 40
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 75
Score = 24.3 bits (53), Expect = 1.8
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQ---QLRIKILGDC 77
I+S Y+ ++ KIL E+ + EK+ +L + I G+
Sbjct: 2 PITSKYTDEQVEKILAEVAL----VLEKHAASPELTLMIAGNI 40
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 23.9 bits (52), Expect = 2.3
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQ---QLRIKILGDC 77
S YS ++ ++L EL + EK++ L + +LG+
Sbjct: 2 PQISRYSDEQVEQLLAELLN----VLEKHKAPTDLSLMVLGNM 40
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840
{Haemophilus influenzae [TaxId: 727]}
Length = 72
Score = 24.0 bits (52), Expect = 2.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 38 AISSTYSASELVKILNELFARFDRLSEKYQ---QLRIKILGDC 77
A S YS ++L I+N++ A + EK++ L + LG+
Sbjct: 2 AQHSKYSDAQLSAIVNDMIA----VLEKHKAPVDLSLIALGNM 40
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 24.3 bits (52), Expect = 4.4
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 63 SEKYQQLR-IKILGDCYYCISGAPKERPDHAILSVHMGLSMVKAIK 107
S + Q+LR IK LG + GA R H++ + + + +
Sbjct: 37 SAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEITRRICEIFQ 82
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 23.3 bits (50), Expect = 4.8
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 43 YSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCIS 82
YS+ ++V + ++ E + IK +G + I
Sbjct: 31 YSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRIL 70
>d1vava_ b.29.1.18 (A:) Alginate lyase PA1167 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 222
Score = 23.7 bits (51), Expect = 5.0
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 22 SQNTWRILYADIVGFTAISSTYSASEL 48
+ + G +S + SEL
Sbjct: 35 RTADGIRFWVPVNGSHTRNSEFPRSEL 61
>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon
Halobacterium salinarum [TaxId: 2242]}
Length = 180
Score = 23.5 bits (50), Expect = 5.7
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 31 ADIVGFTAIS-STYSASELVKILNELFARFDRLSEKYQQ 68
++ G A+ A + V LN A L + ++
Sbjct: 11 GEVEGSDALRMDADRAEQCVDALNADLANVYVLYHQLKK 49
>d1uaia_ b.29.1.18 (A:) Polyguluronate lyase {Corynebacterium sp.
ALY-1 [TaxId: 101519]}
Length = 223
Score = 23.7 bits (51), Expect = 5.7
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 22 SQNTWRILYADIVGFTAISSTYSASEL 48
++ T A + G T S Y SEL
Sbjct: 48 AKCTGVQFRAAVNGVTTSGSGYPRSEL 74
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 23.1 bits (49), Expect = 9.2
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 20 PCSQNTWR----ILYADIVG-FTAISSTYSASELVKILNELF 56
P W+ + Y + F I + +V+ L+ L
Sbjct: 14 PVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLL 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.411
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 404,669
Number of extensions: 16240
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 22
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.4 bits)