BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13603
         (133 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C0K|A Chain A, The Structure Of Hemoglobin From The Botfly Gasterophilus
           Intestinalis
 pdb|2C0K|B Chain B, The Structure Of Hemoglobin From The Botfly Gasterophilus
           Intestinalis
          Length = 151

 Score = 28.9 bits (63), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 30  DLGEN-FDSLFKKIYMSRHENLLISGKKISRRGAVSLENIICTNVILLVSANILGQMCYH 88
           D G+  FD ++KK+  + HE      KK+ RR    L++II   V   V  N      YH
Sbjct: 80  DFGDKKFDDVWKKLAQTHHE------KKVERRSYNELKDIIIEVVCSCVKLNEKQVHAYH 133


>pdb|1ID1|A Chain A, Crystal Structure Of The Rck Domain From E.Coli
          Potassium Channel
 pdb|1ID1|B Chain B, Crystal Structure Of The Rck Domain From E.Coli
          Potassium Channel
          Length = 153

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 6  INLRGRERLLLSVLPEHVAVQMRQDLGENFD 36
          +N RG+   ++S LPE    Q+ Q LG+N D
Sbjct: 22 LNQRGQNVTVISNLPEDDIKQLEQRLGDNAD 52


>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
          Mammalian Adenylyl Cyclase: Complex With
          2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
          Mg
 pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian
          Adenylyl Cyclase By Mant-gtp
 pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
          Adenylyl Cyclase: Complex With Tnp-Atp And Mn
 pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
          Domains Of Mammalian Adenylyl Cyclase: Complex With
          Mant- Atp And Mn
 pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
          Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
          And Ca
 pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
          Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
          And Mg
 pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
          Mammalian Adenylyl Cyclase: Complex With
          Adenosine-5'-Triphosphate And Ca
 pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
          Mammalian Adenylyl Cyclase: Complex With Mant-Itp And
          Mn
 pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
          Mammalian Adenylyl Cyclase: Complex With Adenosine
          5-o-(l-thiophosphate) And Low Ca Concentration
          Length = 225

 Score = 26.6 bits (57), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 24 AVQMRQDL-GENFDSLFKKIYMSRHENLLI 52
          A++M+ D+  +  D +F KIY+ +H+N+ I
Sbjct: 8  AMEMKADINAKQEDMMFHKIYIQKHDNVSI 37


>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
          Mammalian Adenylyl Cyclase
          Length = 220

 Score = 26.2 bits (56), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 24 AVQMRQDL-GENFDSLFKKIYMSRHENLLI 52
          A++M+ D+  +  D +F KIY+ +H+N+ I
Sbjct: 8  AMEMKADINAKQEDMMFHKIYIQKHDNVSI 37


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,237,993
Number of Sequences: 62578
Number of extensions: 100808
Number of successful extensions: 241
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 6
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)