Query psy13603
Match_columns 133
No_of_seqs 159 out of 1162
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:26:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y10_A Hypothetical protein RV 99.9 3.1E-22 1.1E-26 161.7 9.2 114 5-129 161-310 (407)
2 1azs_A VC1; complex (lyase/hyd 99.8 5.4E-21 1.8E-25 143.1 4.9 94 36-133 21-145 (220)
3 3uvj_A Guanylate cyclase solub 99.8 1.2E-20 4.1E-25 141.2 5.6 88 42-133 7-125 (225)
4 1yk9_A Adenylate cyclase; beta 99.8 8.4E-20 2.9E-24 134.7 4.4 88 42-133 3-121 (204)
5 1ab8_A Adenylyl cyclase; lyase 99.8 1.4E-19 4.6E-24 135.0 5.6 90 41-133 6-143 (220)
6 3et6_A Soluble guanylyl cyclas 99.8 5.6E-19 1.9E-23 128.3 7.1 86 44-133 4-121 (190)
7 2wz1_A Guanylate cyclase solub 99.8 4E-19 1.4E-23 132.5 6.2 88 42-133 5-129 (219)
8 2w01_A Adenylate cyclase; guan 99.7 9E-18 3.1E-22 123.8 6.8 83 46-132 11-128 (208)
9 3r5g_A CYAB; adenylyl cyclase, 99.7 9.5E-18 3.2E-22 122.3 5.8 85 46-133 6-127 (198)
10 1wc3_A Adenylate cyclase; solu 99.7 7.5E-17 2.6E-21 120.0 6.2 84 46-132 24-149 (219)
11 1ybt_A Hydrolase, alpha/beta h 99.6 1E-15 3.5E-20 111.2 4.3 79 43-132 11-114 (184)
12 1fx2_A Receptor-type adenylate 99.5 2.5E-15 8.6E-20 112.2 4.2 47 43-93 6-71 (235)
13 3mr7_A Adenylate/guanylate cyc 99.4 6.7E-13 2.3E-17 96.1 6.6 72 46-128 4-108 (189)
14 3hls_A Guanylate cyclase solub 98.5 8.3E-08 2.9E-12 58.8 3.6 26 5-30 41-66 (66)
15 2xgv_A PSIV capsid N-terminal 82.1 0.27 9.2E-06 33.9 -0.0 26 57-85 37-62 (142)
16 2wlv_A GAG polyprotein, HIV-2 78.9 0.4 1.4E-05 33.1 -0.0 26 57-85 36-61 (144)
17 2xde_A GAG polyprotein, HIV-1 78.5 0.4 1.4E-05 33.1 -0.1 26 57-85 38-63 (145)
18 2xgu_A Relik capsid N-terminal 74.8 0.58 2E-05 32.5 -0.1 26 57-85 37-62 (149)
19 1eia_A EIAV capsid protein P26 50.5 3.3 0.00011 30.2 -0.0 26 57-85 23-48 (207)
20 1l6n_A GAG polyprotein; matrix 48.9 3.7 0.00013 31.4 0.0 26 57-85 169-194 (289)
21 1avo_A 11S regulator; proteaso 43.3 11 0.00037 21.9 1.5 18 8-25 19-36 (60)
22 3h47_A Ca, capsid protein P24; 32.2 9.2 0.00031 28.3 -0.1 25 58-85 38-62 (231)
23 1afo_A Glycophorin A; integral 28.7 2.6 8.9E-05 22.5 -2.6 7 125-131 19-25 (40)
24 2rod_B NOXA, noxaa; MCL-1, apo 22.9 36 0.0012 16.0 1.1 13 19-31 3-15 (27)
25 2k42_B Espfu; WAsp, GBD, autoi 21.2 32 0.0011 17.8 0.8 13 18-31 3-15 (36)
26 3gv2_A Ca, fusion protein cons 20.8 20 0.00068 28.0 -0.1 25 58-85 38-62 (342)
No 1
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=99.87 E-value=3.1e-22 Score=161.75 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=89.1
Q ss_pred HHHHHhHHHHHHhcCc-------HHHHHHHHhccccCc---cchhhhhhhhcccceeeeeeecccCCcccccccccCHHH
Q psy13603 5 LINLRGRERLLLSVLP-------EHVAVQMRQDLGENF---DSLFKKIYMSRHENLLISGKKISRRGAVSLENIICTNVI 74 (133)
Q Consensus 5 ~~e~~~~e~LL~~ilP-------~~va~~l~~~~~~~~---~~~~~~~~~~~~~~vTilFaDivgFT~~s~~~q~~~p~e 74 (133)
++|++|+|+||++||| ++|+++|+.+..... .+.+...+..++.+|||||+||+|||.+++ .++|.+
T Consensus 161 ~ee~~kse~LL~~iLP~L~~~l~~~va~~L~~~~~~~~v~~~~r~~~~~~~~~~~vTVlFaDIvgFT~ls~---~~~p~e 237 (407)
T 1y10_A 161 LDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGERAAGKPLPGARQVTVAFADLVGFTQLGE---VVSAEE 237 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCEEEEEEEEEECSBCTTSC---BCCHHH
T ss_pred HhHHHHHHHHHHHhcccccccchHHHHHHHHhcccchhhhhhhhcccccccceeeEEEEEEEccCchHHHh---hCCHHH
Confidence 5788999999999999 999999998863100 000001122368999999999999999999 699999
Q ss_pred HHHHhh------------------hhcceeeeeccCCccCccHHHHHHHHHHHHHHHHhccc------e--ecccceeEE
Q psy13603 75 LLVSAN------------------ILGQMCYHMSEKEQRTAFLETRQCLEMRLVIEEQSAEQ------R--FDKGNYNCG 128 (133)
Q Consensus 75 vv~~Ln------------------tIGD~ym~vsg~~~r~~~~ha~~~v~~al~m~~~~~~~------~--ihsG~vvaG 128 (133)
++.+|| |+||+||+++|.+. .+++++++|.+..++. + ||+|+|++|
T Consensus 238 vv~lLn~~~~~~~~i~~~~g~~iKtiGDa~mavfg~p~--------~a~~~Al~m~~~l~~~~~~l~iRIGIhtG~Vv~G 309 (407)
T 1y10_A 238 LGHLAGRLAGLARDLTAPPVWFIKTIGDAVMLVCPDPA--------PLLDTVLKLVEVVDTDNNFPRLRAGVASGMAVSR 309 (407)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEEEEEETTEEEEEESSHH--------HHHHHHHHHHHHHHTCTTSCCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEecceEEEEECCHH--------HHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEe
Confidence 999987 99999999999643 3667778887766542 2 999999999
Q ss_pred e
Q psy13603 129 H 129 (133)
Q Consensus 129 v 129 (133)
+
T Consensus 310 v 310 (407)
T 1y10_A 310 A 310 (407)
T ss_dssp T
T ss_pred c
Confidence 4
No 2
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=99.82 E-value=5.4e-21 Score=143.11 Aligned_cols=94 Identities=29% Similarity=0.462 Sum_probs=79.8
Q ss_pred cchhhhhhhhcccceeeeeeecccCCcccccccccCHHHHHHHhh-------------------hhcceeeeeccCCccC
Q psy13603 36 DSLFKKIYMSRHENLLISGKKISRRGAVSLENIICTNVILLVSAN-------------------ILGQMCYHMSEKEQRT 96 (133)
Q Consensus 36 ~~~~~~~~~~~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~Ln-------------------tIGD~ym~vsg~~~r~ 96 (133)
++.|.+++++++++|||||+||+|||.+++ .++|.+++.+|| ++||+||+++|.+...
T Consensus 21 ~~~~~~l~~~~~~~vtvlF~DI~gfT~l~e---~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~ 97 (220)
T 1azs_A 21 DMMFHKIYIQKHDNVSILFADIEGFTSLAS---QCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEAR 97 (220)
T ss_dssp CCSSCCCEEEEEEEEEEEEEEEETHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCC
T ss_pred ccccccccccccccEEEEEEEccChHHHHh---hCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCeEEEEECCCCCC
Confidence 346778889999999999999999999998 689999999887 8999999999964433
Q ss_pred ccHHHHHHHHHHHHHHHHhccc----------e--ecccceeEEeecCC
Q psy13603 97 AFLETRQCLEMRLVIEEQSAEQ----------R--FDKGNYNCGHIVPK 133 (133)
Q Consensus 97 ~~~ha~~~v~~al~m~~~~~~~----------~--ihsG~vvaGvvG~~ 133 (133)
. +|+.+++.++++|.+..++. + ||+|+|++|+||.+
T Consensus 98 ~-~~a~~Av~~Al~m~~~l~~~~~~~~~~l~irIGI~tG~v~~G~vG~~ 145 (220)
T 1azs_A 98 A-DHAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLR 145 (220)
T ss_dssp S-THHHHHHHHHHHHHHHHHHHHHHHCSCCEEEEEEEEEEEEEEECSSS
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEeEEEEEEeCCC
Confidence 2 49999999999998765432 1 99999999999964
No 3
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=141.17 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=75.8
Q ss_pred hhhhcccceeeeeeecccCCcccccccccCHHHHHHHhh-------------------hhcceeeeeccCCccCccHHHH
Q psy13603 42 IYMSRHENLLISGKKISRRGAVSLENIICTNVILLVSAN-------------------ILGQMCYHMSEKEQRTAFLETR 102 (133)
Q Consensus 42 ~~~~~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~Ln-------------------tIGD~ym~vsg~~~r~~~~ha~ 102 (133)
++++++++|||||+||+|||++++ .++|.+++.+|| ++||+||+++|.+.... +|+.
T Consensus 7 ~~~~~~~~vtvlF~Di~gfT~l~~---~~~~~~~~~~ln~~~~~~~~~i~~~~g~v~k~~GD~~ma~fg~p~~~~-~~a~ 82 (225)
T 3uvj_A 7 VQAKKFSNVTMLFSDIVGFTAICS---QCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESD-THAV 82 (225)
T ss_dssp EEEEEEEEEEEEEEEETTHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCEEECCSTTCEEEEESSSSCCT-THHH
T ss_pred cCCcccceEEEEEEEccChHHHHh---cCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEeeCcEEEEEECCCCCch-HHHH
Confidence 456789999999999999999998 689999999887 89999999999644333 4999
Q ss_pred HHHHHHHHHHHHhccce------------ecccceeEEeecCC
Q psy13603 103 QCLEMRLVIEEQSAEQR------------FDKGNYNCGHIVPK 133 (133)
Q Consensus 103 ~~v~~al~m~~~~~~~~------------ihsG~vvaGvvG~~ 133 (133)
+++.++++|.+..++.+ ||+|+|++|+||.+
T Consensus 83 ~a~~~al~~~~~~~~~~~~~~~~l~~riGih~G~v~~G~iG~~ 125 (225)
T 3uvj_A 83 QIALMALKMMELSDEVMSPHGEPIKMRIGLHSGSVFAGVVGVK 125 (225)
T ss_dssp HHHHHHHHHHHHHTTSBCTTSCBCCEEEEEEEEEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHhhcCCceEEEEEEEeccEEEEEecCC
Confidence 99999999998766432 99999999999974
No 4
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=99.78 E-value=8.4e-20 Score=134.71 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=73.1
Q ss_pred hhhhcccceeeeeeecccCCcccccccccCHHHHHHHhh-------------------hhcceeeeeccCCccCccHHHH
Q psy13603 42 IYMSRHENLLISGKKISRRGAVSLENIICTNVILLVSAN-------------------ILGQMCYHMSEKEQRTAFLETR 102 (133)
Q Consensus 42 ~~~~~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~Ln-------------------tIGD~ym~vsg~~~r~~~~ha~ 102 (133)
+++++++++||||+||+|||.+++ .++|.+++.+|| ++||+||++.|.+.... +|+.
T Consensus 3 ~~~~~~~~vtvlf~DI~gfT~l~~---~~~~~~~~~~ln~~~~~~~~~i~~~gG~v~k~~GD~~ma~fg~p~~~~-~~a~ 78 (204)
T 1yk9_A 3 IIADKYDEASVLFADIVGFTERAS---STAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRP-DHTQ 78 (204)
T ss_dssp ---CCCSCEEEEEEEESCSSCSSC---CCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCT-THHH
T ss_pred CCccccCcEEEEEEEccChHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCeEEEEECCCCCCh-HHHH
Confidence 467889999999999999999998 588888888776 89999999999643332 4999
Q ss_pred HHHHHHHHHHHHhccce------------ecccceeEEeecCC
Q psy13603 103 QCLEMRLVIEEQSAEQR------------FDKGNYNCGHIVPK 133 (133)
Q Consensus 103 ~~v~~al~m~~~~~~~~------------ihsG~vvaGvvG~~ 133 (133)
++++++++|.+..++.+ ||+|+|++|+||.+
T Consensus 79 ~A~~~Al~~~~~~~~~~~~~~~~l~~rIGI~tG~v~~g~vG~~ 121 (204)
T 1yk9_A 79 ALADFALDMTNVAAQLKDPRGNPVPLRVGLATGPVVAGVVGSR 121 (204)
T ss_dssp HHHTHHHHHHHHTTTCCSSSCCCCCEEEEEEEECEEECCCCSS
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEEeeEEEEEEecCC
Confidence 99999999998876532 99999999999963
No 5
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=99.78 E-value=1.4e-19 Score=134.98 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=72.0
Q ss_pred hhhhhcccceeeeeeecccCCccccccccc----CHHHHHHHhh----------------------hhcceeeeeccCCc
Q psy13603 41 KIYMSRHENLLISGKKISRRGAVSLENIIC----TNVILLVSAN----------------------ILGQMCYHMSEKEQ 94 (133)
Q Consensus 41 ~~~~~~~~~vTilFaDivgFT~~s~~~q~~----~p~evv~~Ln----------------------tIGD~ym~vsg~~~ 94 (133)
.++++++++|||||+||+|||.+++ .+ +|.+++.+|| ++||+||+++|.+.
T Consensus 6 ~~~~~~~~~vtvlF~DI~gfT~l~~---~l~~~~~p~~~~~~Ln~~~~~~~~~i~~~~~~g~~~ik~iGD~~ma~fg~p~ 82 (220)
T 1ab8_A 6 ELYHQSYDCVCVMFASIPDFKEFYT---ESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSA 82 (220)
T ss_dssp -CCEEEEEEEEEEEEECTTHHHHCC---CSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCC
T ss_pred cccccccCcEEEEEEEccchHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeCceEEEEECCCc
Confidence 3567889999999999999999997 34 3788887765 68999999999654
Q ss_pred c----------CccHHHHHHHHHHHHHHHHhccc----------e--ecccceeEEeecCC
Q psy13603 95 R----------TAFLETRQCLEMRLVIEEQSAEQ----------R--FDKGNYNCGHIVPK 133 (133)
Q Consensus 95 r----------~~~~ha~~~v~~al~m~~~~~~~----------~--ihsG~vvaGvvG~~ 133 (133)
. ...+|+.++++++++|.+..++. + ||+|+|++|+||.+
T Consensus 83 ~~~~~~~~~~~~~~~~a~~a~~~Al~~~~~l~~~~~~~~~~l~~rIGIh~G~v~~G~iG~~ 143 (220)
T 1ab8_A 83 IPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQ 143 (220)
T ss_dssp SCCC--------CCHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCEEEEEEEEEEEEEECSS
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEEeeeEEEEeecCC
Confidence 1 12359999999999998765432 1 99999999999964
No 6
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=99.77 E-value=5.6e-19 Score=128.26 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=73.8
Q ss_pred hhcccceeeeeeecccCCcccccccccCHHHHHHHhh--------------------hhcceeeeeccCCccCccHHHHH
Q psy13603 44 MSRHENLLISGKKISRRGAVSLENIICTNVILLVSAN--------------------ILGQMCYHMSEKEQRTAFLETRQ 103 (133)
Q Consensus 44 ~~~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~Ln--------------------tIGD~ym~vsg~~~r~~~~ha~~ 103 (133)
++++++|||||+||+|||.+++ .++|.+++.+|| ++||+||++.|.+.... +|+.+
T Consensus 4 ~~e~~~vtvlf~Di~gft~l~~---~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~~GD~~~a~fg~~~~~~-~~~~~ 79 (190)
T 3et6_A 4 AQEHPEATVLFSDIVGFTEIAS---RSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCD-DHADV 79 (190)
T ss_dssp CEEEEEEEEEEEEETTHHHHTT---TSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCS-THHHH
T ss_pred ccccceEEEEEeEecChhHhHh---hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeCCEEEEEECCCCCch-hHHHH
Confidence 3568999999999999999998 689999998876 79999999999654433 49999
Q ss_pred HHHHHHHHHHHhccce------------ecccceeEEeecCC
Q psy13603 104 CLEMRLVIEEQSAEQR------------FDKGNYNCGHIVPK 133 (133)
Q Consensus 104 ~v~~al~m~~~~~~~~------------ihsG~vvaGvvG~~ 133 (133)
+++++++|.+..++.. ||+|+|++|+||.+
T Consensus 80 a~~~al~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~ 121 (190)
T 3et6_A 80 LLEFALRMHEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRK 121 (190)
T ss_dssp HHHHHHHHHHHHHTSCCC---CCCEEEEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEEeccEEEEecCCC
Confidence 9999999998765432 99999999999964
No 7
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=99.77 E-value=4e-19 Score=132.52 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=75.0
Q ss_pred hhhhcccceeeeeeecccCCcccccccccC----HHHHHHHhh----------------------hhcceeeeeccCCcc
Q psy13603 42 IYMSRHENLLISGKKISRRGAVSLENIICT----NVILLVSAN----------------------ILGQMCYHMSEKEQR 95 (133)
Q Consensus 42 ~~~~~~~~vTilFaDivgFT~~s~~~q~~~----p~evv~~Ln----------------------tIGD~ym~vsg~~~r 95 (133)
.+++++.+|||||+||+|||.+++ .++ |.+++.+|| ++||+||++.|.+..
T Consensus 5 ~~~~~~~~vtvlF~DI~gfT~l~e---~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~ma~fg~p~~ 81 (219)
T 2wz1_A 5 VPAKRYDNVTILFSGIVGFNAFCS---KHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEP 81 (219)
T ss_dssp CCCEEEEEEEEEEEEETTHHHHHH---HSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSC
T ss_pred cCccceeeEEEEEEEccCcHHHHH---hCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEEEEECCCCC
Confidence 456789999999999999999998 578 999988876 789999999996543
Q ss_pred CccHHHHHHHHHHHHHHHHhccce-----------ecccceeEEeecCC
Q psy13603 96 TAFLETRQCLEMRLVIEEQSAEQR-----------FDKGNYNCGHIVPK 133 (133)
Q Consensus 96 ~~~~ha~~~v~~al~m~~~~~~~~-----------ihsG~vvaGvvG~~ 133 (133)
.. +|+.++++++++|.+..++.+ ||+|+|++|+||.+
T Consensus 82 ~~-~~a~~A~~~Al~~~~~~~~~~~~~~~l~~rIGi~~G~v~~G~iG~~ 129 (219)
T 2wz1_A 82 CI-HHARSICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQR 129 (219)
T ss_dssp CT-THHHHHHHHHHHHHHHHTTCEETTEECCEEEEEEEEEEEEEEECSS
T ss_pred Ch-hHHHHHHHHHHHHHHHHHHHhccCCceEEEEEEEEEEEEEEEeCCC
Confidence 33 499999999999998876532 99999999999974
No 8
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=99.71 E-value=9e-18 Score=123.84 Aligned_cols=83 Identities=10% Similarity=0.047 Sum_probs=69.9
Q ss_pred cccceeeeeeecccCCcccccccccCHHHHHHHhh-------------------hhcceeeeeccCCccCccHHHHHHHH
Q psy13603 46 RHENLLISGKKISRRGAVSLENIICTNVILLVSAN-------------------ILGQMCYHMSEKEQRTAFLETRQCLE 106 (133)
Q Consensus 46 ~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~Ln-------------------tIGD~ym~vsg~~~r~~~~ha~~~v~ 106 (133)
+..++||||+||+|||.+++ .++|.+++.+|| ++||+||++.|.+.... +|+.++++
T Consensus 11 e~~~vtvlf~Di~gfT~l~~---~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~-~~a~~Av~ 86 (208)
T 2w01_A 11 DRRPITILTSDLRGFTSTSE---GLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTSQQ-DDALRAVA 86 (208)
T ss_dssp EEEEEEEEEEECTTHHHHGG---GSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCT-THHHHHHH
T ss_pred eEEEEEEEEEEecChHHHHh---hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCEEEEEECCCCCCh-hHHHHHHH
Confidence 47899999999999999998 689999998876 99999999999643332 49999999
Q ss_pred HHHHHHHHhcc--------------ce--ecccceeEEeecC
Q psy13603 107 MRLVIEEQSAE--------------QR--FDKGNYNCGHIVP 132 (133)
Q Consensus 107 ~al~m~~~~~~--------------~~--ihsG~vvaGvvG~ 132 (133)
++++|.+..++ .+ ||+|+|++|+||.
T Consensus 87 ~Al~~~~~l~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~ 128 (208)
T 2w01_A 87 CGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGS 128 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeEEEEEEeCC
Confidence 99998765432 11 9999999999996
No 9
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=99.70 E-value=9.5e-18 Score=122.32 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=70.3
Q ss_pred cccceeeeeeecccCCcccccccccCHHHHHHHhh-------------------hhcceeeeeccCCccC-ccHHHHHHH
Q psy13603 46 RHENLLISGKKISRRGAVSLENIICTNVILLVSAN-------------------ILGQMCYHMSEKEQRT-AFLETRQCL 105 (133)
Q Consensus 46 ~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~Ln-------------------tIGD~ym~vsg~~~r~-~~~ha~~~v 105 (133)
+..+|||||+||+|||.+++ .++|.+++.++| ++||+||++.|.+... ..+|+.+++
T Consensus 6 e~~~vtvlf~Di~gft~l~~---~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~~~~~a~~a~ 82 (198)
T 3r5g_A 6 QRKKLTVFFSDIRGFTELSE---ELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPSTQGAKKDAVAAV 82 (198)
T ss_dssp EEEEEEEEEEEEETHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEETTEEEEEESSSSCSCHHHHHHHHH
T ss_pred eEEEEEEEEEEccccchhhh---hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeeCCEEEEEECCCcccccHHHHHHHH
Confidence 46899999999999999998 689999998876 9999999999965432 235899999
Q ss_pred HHHHHHHHHhcc-------------ce----ecccceeEEeecCC
Q psy13603 106 EMRLVIEEQSAE-------------QR----FDKGNYNCGHIVPK 133 (133)
Q Consensus 106 ~~al~m~~~~~~-------------~~----ihsG~vvaGvvG~~ 133 (133)
.++++|.+..++ .+ ||+|+|++|+||.+
T Consensus 83 ~~al~i~~~~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~ 127 (198)
T 3r5g_A 83 SMGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFGAD 127 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCSCCEEEEEEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEEEEEEEeCCC
Confidence 999998765432 11 99999999999963
No 10
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=99.66 E-value=7.5e-17 Score=120.01 Aligned_cols=84 Identities=11% Similarity=0.011 Sum_probs=69.3
Q ss_pred cccceeeeeeecccCCcccccccccCHHHHHHHhh-------------------hhcceeeeeccCCcc-CccHHHHHHH
Q psy13603 46 RHENLLISGKKISRRGAVSLENIICTNVILLVSAN-------------------ILGQMCYHMSEKEQR-TAFLETRQCL 105 (133)
Q Consensus 46 ~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~Ln-------------------tIGD~ym~vsg~~~r-~~~~ha~~~v 105 (133)
+..+|||||+||+|||.+++ .++|.+++.+|| ++||+||++.|.+.. ...+|+.+++
T Consensus 24 e~~~vtvlF~DI~gfT~l~~---~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~~~~~a~~Av 100 (219)
T 1wc3_A 24 EPRLITILFSDIVGFTRMSN---ALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMSPSEQVRRAI 100 (219)
T ss_dssp EEEEEEEEEEEEESHHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCCHHHHHHHHH
T ss_pred ceeEEEEEEEEecChHHHHh---hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCeEEEEECCCCCCCChHHHHHHH
Confidence 46899999999999999998 689999998876 999999999996543 2235889999
Q ss_pred HHHHHHHHHhcc------------------c--e--ecccceeEEeecC
Q psy13603 106 EMRLVIEEQSAE------------------Q--R--FDKGNYNCGHIVP 132 (133)
Q Consensus 106 ~~al~m~~~~~~------------------~--~--ihsG~vvaGvvG~ 132 (133)
+++++|.+..++ . + ||+|+|++|+||.
T Consensus 101 ~~Al~~~~~l~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~ 149 (219)
T 1wc3_A 101 ATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGS 149 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSTTCCCCEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCccEEEEEEEeceEEEEEcCC
Confidence 999998764321 1 1 9999999999996
No 11
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=99.57 E-value=1e-15 Score=111.18 Aligned_cols=79 Identities=8% Similarity=-0.121 Sum_probs=64.4
Q ss_pred hhhcccceeeeeeecccCCcccccccccCHHHHHHHhh-------------------hhcceeeeeccCCccCccHHHHH
Q psy13603 43 YMSRHENLLISGKKISRRGAVSLENIICTNVILLVSAN-------------------ILGQMCYHMSEKEQRTAFLETRQ 103 (133)
Q Consensus 43 ~~~~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~Ln-------------------tIGD~ym~vsg~~~r~~~~ha~~ 103 (133)
+..++.++||||+||+|||.+++ .++|.+++.+|| ++||+||++.|.+ .+
T Consensus 11 ~~~~~~~~tvlf~Di~gft~l~~---~~~~~~~~~~l~~~~~~~~~~i~~~gG~v~k~~GD~~ma~f~~p--------~~ 79 (184)
T 1ybt_A 11 GSAERMLATIMFTDIVGSTQHAA---ALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSP--------SA 79 (184)
T ss_dssp --CEEEEEEEEEEEETTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCH--------HH
T ss_pred CCCceEEEEEEEEECcCcHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeEeCCEEEEEeCCH--------HH
Confidence 34678999999999999999998 688999998876 9999999999854 24
Q ss_pred HHHHHHHHHHHhccce------ecccceeEEeecC
Q psy13603 104 CLEMRLVIEEQSAEQR------FDKGNYNCGHIVP 132 (133)
Q Consensus 104 ~v~~al~m~~~~~~~~------ihsG~vvaGvvG~ 132 (133)
+++++++|.+..++.. ||+|+|++|.+|.
T Consensus 80 A~~~Al~~~~~l~~~~l~~riGi~~G~v~~g~ig~ 114 (184)
T 1ybt_A 80 AIACADDIVDAVAALGIEVRIGIHAGEVEVRDASH 114 (184)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeEEEEEecCC
Confidence 6777888887766533 9999999996553
No 12
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=99.54 E-value=2.5e-15 Score=112.25 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=40.0
Q ss_pred hhhcccceeeeeeecccCCcccccccccCHHHHHHHhh-------------------hhcceeeeeccCC
Q psy13603 43 YMSRHENLLISGKKISRRGAVSLENIICTNVILLVSAN-------------------ILGQMCYHMSEKE 93 (133)
Q Consensus 43 ~~~~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~Ln-------------------tIGD~ym~vsg~~ 93 (133)
.++.+++|||||+||+|||.+++ .. |.+++.+|| ++||+||++.|.+
T Consensus 6 ~~~~~~~vtvlF~DI~gfT~l~~---~~-~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~ma~fg~p 71 (235)
T 1fx2_A 6 PKEPTDPVTLIFTDIESSTALWA---AH-PDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSP 71 (235)
T ss_dssp CCCTTSCEEEEEEEETTHHHHHH---HC-TTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCH
T ss_pred CCCCCCcEEEEEEeccChHHHHH---HC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCCeEEEEeCCH
Confidence 35678999999999999999998 34 777777765 8999999999964
No 13
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=99.38 E-value=6.7e-13 Score=96.11 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=52.9
Q ss_pred cccceeeeeeecccCCcccccccccCHHHHHHHh-------------------hhhcceeeeeccCCccCccHHHHHHHH
Q psy13603 46 RHENLLISGKKISRRGAVSLENIICTNVILLVSA-------------------NILGQMCYHMSEKEQRTAFLETRQCLE 106 (133)
Q Consensus 46 ~~~~vTilFaDivgFT~~s~~~q~~~p~evv~~L-------------------ntIGD~ym~vsg~~~r~~~~ha~~~v~ 106 (133)
+..+|||||+||+|||.+++ .++|..+..+. +++||+||++.|. +.+++.
T Consensus 4 e~r~vtvlf~Di~gft~l~~---~~~~~~~~~l~~~~~~~~~~~i~~~~G~v~k~~GD~~~a~f~~--------~~~A~~ 72 (189)
T 3mr7_A 4 ERRLCAILAADMAGYSRLME---RNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT--------AQAALR 72 (189)
T ss_dssp EEEEEEEEEEEECCCCGGGC---CCCHHHHHHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEESS--------HHHHHH
T ss_pred cEEEEEEEEEEchhhHHHHh---hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCEEEEEeCC--------HHHHHH
Confidence 36799999999999999998 46776653321 2999999999984 244556
Q ss_pred HHHHHHHHhcc------------ce--ecccceeEE
Q psy13603 107 MRLVIEEQSAE------------QR--FDKGNYNCG 128 (133)
Q Consensus 107 ~al~m~~~~~~------------~~--ihsG~vvaG 128 (133)
++++|.+..++ .+ ||+|+|++|
T Consensus 73 ~Al~i~~~l~~~~~~~~~~~~l~~riGi~~G~v~~g 108 (189)
T 3mr7_A 73 CALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE 108 (189)
T ss_dssp HHHHHHHHHHHHTTTSCGGGCCCEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhhhcccCCceeEEEEEEEEEEEEE
Confidence 66666554322 11 999999998
No 14
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=98.50 E-value=8.3e-08 Score=58.82 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=23.8
Q ss_pred HHHHHhHHHHHHhcCcHHHHHHHHhc
Q psy13603 5 LINLRGRERLLLSVLPEHVAVQMRQD 30 (133)
Q Consensus 5 ~~e~~~~e~LL~~ilP~~va~~l~~~ 30 (133)
.+||+|+|+||++|||++||++|+.|
T Consensus 41 ~~EK~ktd~LL~~mLP~~VA~~Lk~G 66 (66)
T 3hls_A 41 EDEKKKTDTLLYSVLPPSVANELRHK 66 (66)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhCc
Confidence 48999999999999999999999976
No 15
>2xgv_A PSIV capsid N-terminal domain; retroviral capsid, viral protein; 2.00A {Microcebus murinus}
Probab=82.09 E-value=0.27 Score=33.89 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=23.3
Q ss_pred cccCCcccccccccCHHHHHHHhhhhcce
Q psy13603 57 ISRRGAVSLENIICTNVILLVSANILGQM 85 (133)
Q Consensus 57 ivgFT~~s~~~q~~~p~evv~~LntIGD~ 85 (133)
|-+|+++|+ .++|.++-.|||++|+.
T Consensus 37 ipmF~AlSe---g~Tp~Dln~mLn~vggh 62 (142)
T 2xgv_A 37 ITYWGLISQ---DLSSREQVQLLEVVPGL 62 (142)
T ss_dssp HHHHHHHTT---TCCHHHHHHHHHHCCSC
T ss_pred hHHHHHHhC---CCChHHHHHHHHhcccc
Confidence 668999999 59999999999999986
No 16
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=78.92 E-value=0.4 Score=33.09 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=23.3
Q ss_pred cccCCcccccccccCHHHHHHHhhhhcce
Q psy13603 57 ISRRGAVSLENIICTNVILLVSANILGQM 85 (133)
Q Consensus 57 ivgFT~~s~~~q~~~p~evv~~LntIGD~ 85 (133)
|-+|+++|+ .++|.++-.|||++|+.
T Consensus 36 ipmFsALSe---gaTP~Dln~mLn~vggh 61 (144)
T 2wlv_A 36 VPGFQALSE---GCTPYDINQMLNCVGDH 61 (144)
T ss_dssp HHHHHHHTT---TCCHHHHHHHHHTTTTC
T ss_pred hHHHHHHhc---ccCcHHHHHHHHhcccc
Confidence 668899999 59999999999999986
No 17
>2xde_A GAG polyprotein, HIV-1 capsid; AIDS, viral protein; HET: 1B0; 1.40A {Human immunodeficiency virus 1} PDB: 1m9y_C 2x2d_D* 1m9x_C 1m9e_C 1m9f_C 1afv_A 1gwp_A 2pxr_C 2gol_B 1m9c_C 2x83_A 4e91_A* 4e92_A* 2pwo_A 2pwm_A 2gon_A 1ak4_C 2jpr_A* 1m9d_C 4dga_C ...
Probab=78.50 E-value=0.4 Score=33.09 Aligned_cols=26 Identities=27% Similarity=0.047 Sum_probs=23.4
Q ss_pred cccCCcccccccccCHHHHHHHhhhhcce
Q psy13603 57 ISRRGAVSLENIICTNVILLVSANILGQM 85 (133)
Q Consensus 57 ivgFT~~s~~~q~~~p~evv~~LntIGD~ 85 (133)
|..|+++|+ .++|.++-.|||++|+.
T Consensus 38 ipmFsALSe---g~TP~Dln~mLn~vggh 63 (145)
T 2xde_A 38 IPMFSALSE---GATPQDLNTMLNTVGGH 63 (145)
T ss_dssp HHHHHHHTT---TCCHHHHHHHHHTCCSC
T ss_pred hHHHHHHHc---ccCcHHHHHHHHhccch
Confidence 568899999 59999999999999986
No 18
>2xgu_A Relik capsid N-terminal domain; viral protein, retroviral capsid; 1.50A {Oryctolagus cuniculus} PDB: 2xgy_A
Probab=74.83 E-value=0.58 Score=32.46 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.2
Q ss_pred cccCCcccccccccCHHHHHHHhhhhcce
Q psy13603 57 ISRRGAVSLENIICTNVILLVSANILGQM 85 (133)
Q Consensus 57 ivgFT~~s~~~q~~~p~evv~~LntIGD~ 85 (133)
|-+|+.+|+ .++|.++-.|||++|+.
T Consensus 37 ipmFsAlSe---g~TP~Din~mLn~vggh 62 (149)
T 2xgu_A 37 ITYFGVISI---NFTSVDINMLLNVTPGF 62 (149)
T ss_dssp HHHHHHHTT---TCCHHHHHHHHHTCCSC
T ss_pred HHHHHHHhC---CCChHHHHHHHHhcccc
Confidence 668899999 59999999999999876
No 19
>1eia_A EIAV capsid protein P26; viral capsid, HIV, lentivirus, viral protein; 2.70A {Equine infectious anemia virus} SCOP: a.28.3.1 a.73.1.1 PDB: 2eia_A
Probab=50.46 E-value=3.3 Score=30.18 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.9
Q ss_pred cccCCcccccccccCHHHHHHHhhhhcce
Q psy13603 57 ISRRGAVSLENIICTNVILLVSANILGQM 85 (133)
Q Consensus 57 ivgFT~~s~~~q~~~p~evv~~LntIGD~ 85 (133)
|-+|+.+|+ .++|.++-.|||++|+.
T Consensus 23 ip~f~alse---~~tp~Din~mLn~vg~~ 48 (207)
T 1eia_A 23 QNLFGILSV---DCTSEEMNAFLDVVPGQ 48 (207)
T ss_dssp HHHHHHHTT---TCCHHHHHHHHHHCCSC
T ss_pred HHHHHHHhC---CCCHHHHHHHHHhhhhh
Confidence 346889998 59999999999999864
No 20
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=48.88 E-value=3.7 Score=31.43 Aligned_cols=26 Identities=27% Similarity=0.047 Sum_probs=22.7
Q ss_pred cccCCcccccccccCHHHHHHHhhhhcce
Q psy13603 57 ISRRGAVSLENIICTNVILLVSANILGQM 85 (133)
Q Consensus 57 ivgFT~~s~~~q~~~p~evv~~LntIGD~ 85 (133)
|-.|+.+|+ .++|.++-.|||++|+.
T Consensus 169 IpmFsALSe---g~Tp~Dln~mLn~vggh 194 (289)
T 1l6n_A 169 IPMFSALSE---GATPQDLNTMLNTVGGH 194 (289)
T ss_dssp HHHHHHHTT---TCCHHHHHHHHHHCCSC
T ss_pred HHHHHHHhc---ccChHHHHHHHHhccch
Confidence 557889998 59999999999999886
No 21
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=43.33 E-value=11 Score=21.86 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.7
Q ss_pred HHhHHHHHHhcCcHHHHH
Q psy13603 8 LRGRERLLLSVLPEHVAV 25 (133)
Q Consensus 8 ~~~~e~LL~~ilP~~va~ 25 (133)
.++.|+|+.+.+|+.|++
T Consensus 19 ~~eAE~ll~~~fP~KI~e 36 (60)
T 1avo_A 19 CTKTENLLGSYFPKKISE 36 (60)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHH
Confidence 467899999999999984
No 22
>3h47_A Ca, capsid protein P24; hexamer, engineered disulfide bonds, viral protein; 1.90A {Human immunodeficiency virus type 1} PDB: 3h4e_A 2lf4_A 3mge_A 3p05_A 3p0a_A 3dik_A 3nte_A 1e6j_P
Probab=32.23 E-value=9.2 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.013 Sum_probs=21.4
Q ss_pred ccCCcccccccccCHHHHHHHhhhhcce
Q psy13603 58 SRRGAVSLENIICTNVILLVSANILGQM 85 (133)
Q Consensus 58 vgFT~~s~~~q~~~p~evv~~LntIGD~ 85 (133)
-.|+.+|. .++|.++-.+||++|+.
T Consensus 38 p~f~alse---~~tp~D~n~mln~vgg~ 62 (231)
T 3h47_A 38 PMFSALSC---GATPQDLNTMLNTVGGH 62 (231)
T ss_dssp HHHHHHTT---TCCHHHHHHHHHTCCSC
T ss_pred HHHHHhhC---CCCHHHHHHHHHhcchh
Confidence 46788998 59999999999999864
No 23
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=28.69 E-value=2.6 Score=22.54 Aligned_cols=7 Identities=29% Similarity=0.121 Sum_probs=3.2
Q ss_pred eeEEeec
Q psy13603 125 YNCGHIV 131 (133)
Q Consensus 125 vvaGvvG 131 (133)
|+|||||
T Consensus 19 vmaGiIG 25 (40)
T 1afo_A 19 VMAGVIG 25 (40)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3445444
No 24
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=22.91 E-value=36 Score=16.03 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=10.4
Q ss_pred CcHHHHHHHHhcc
Q psy13603 19 LPEHVAVQMRQDL 31 (133)
Q Consensus 19 lP~~va~~l~~~~ 31 (133)
||+..|.+|++-.
T Consensus 3 lppefaaqlrkig 15 (27)
T 2rod_B 3 LPPEFAAQLRKIG 15 (27)
T ss_dssp CCTHHHHHHHHHH
T ss_pred CChHHHHHHHHhC
Confidence 7888999998743
No 25
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=21.23 E-value=32 Score=17.79 Aligned_cols=13 Identities=46% Similarity=0.767 Sum_probs=10.2
Q ss_pred cCcHHHHHHHHhcc
Q psy13603 18 VLPEHVAVQMRQDL 31 (133)
Q Consensus 18 ilP~~va~~l~~~~ 31 (133)
.||+ ||++|++..
T Consensus 3 ~LPp-IAQaLk~HL 15 (36)
T 2k42_B 3 MLPD-VAQRLMQHL 15 (36)
T ss_dssp CCSS-HHHHHHHHH
T ss_pred CCcH-HHHHHHHHH
Confidence 4676 999999865
No 26
>3gv2_A Ca, fusion protein consisting of capsid protein P24, carbon dioxide-concentrating mechanism...; hexameric retroviral capsid; 7.00A {Human immunodeficiency virus type 1}
Probab=20.81 E-value=20 Score=28.03 Aligned_cols=25 Identities=24% Similarity=-0.004 Sum_probs=21.4
Q ss_pred ccCCcccccccccCHHHHHHHhhhhcce
Q psy13603 58 SRRGAVSLENIICTNVILLVSANILGQM 85 (133)
Q Consensus 58 vgFT~~s~~~q~~~p~evv~~LntIGD~ 85 (133)
-.|+.+|. .++|.++-.+||++|+.
T Consensus 38 p~f~alse---~~tp~Din~mln~vgg~ 62 (342)
T 3gv2_A 38 PMFSALSE---GATPQDLNTMLNTVGGH 62 (342)
T ss_dssp HHHHHHTT---TCCHHHHHHHHTTCCSC
T ss_pred hHHHHhcC---CCChHHHHHHHHhcchh
Confidence 45788888 59999999999998865
Done!