RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13603
         (133 letters)



>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
          protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
          {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
          1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
          3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
          1tl7_A*
          Length = 220

 Score = 28.8 bits (65), Expect = 0.47
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 21 EHVAVQMRQDLG-ENFDSLFKKIYMSRHEN 49
           H A++M+ D+  +  D +F KIY+ +H+N
Sbjct: 5  HHHAMEMKADINAKQEDMMFHKIYIQKHDN 34


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 2.0
 Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 44/133 (33%)

Query: 11  RERLL-LSVLPEHVAVQM-----------RQDLGENFDSLFKKIYMSRHENLLISG---- 54
           R+    LSV P    +             + D+    + L K   + +            
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 55  ---KKISRRGAVSLENII----------CTNVILLVSA-----NILGQMCYHMSEKEQ-- 94
               K+      +L   I           ++ ++         + +G   +H+   E   
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPE 488

Query: 95  -----RTAFLETR 102
                R  FL+ R
Sbjct: 489 RMTLFRMVFLDFR 501



 Score = 26.7 bits (58), Expect = 2.8
 Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 19/115 (16%)

Query: 22  HVAVQMRQ-DLGENFDSLFKKIYMSRHENLLISGKKISRRGAVSLENIICTNVILLVSAN 80
           H+   ++  +  E    LF+ +++    +     +KI         +    N  L     
Sbjct: 476 HIGHHLKNIEHPERMT-LFRMVFL----DFRFLEQKIRHDSTAWNASGSILNT-LQQLKF 529

Query: 81  ILGQMCYHMSEKEQRTA----FLETRQCLEMRLVIEE-----QSAEQRFDKGNYN 126
               +C +  + E+       FL     +E  L+  +     + A    D+  + 
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPK---IEENLICSKYTDLLRIALMAEDEAIFE 581


>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
          signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
          GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
          Length = 66

 Score = 24.3 bits (53), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 12 ERLLLSVLPEHVAVQMRQ 29
          + LL SVLP  VA ++R 
Sbjct: 48 DTLLYSVLPPSVANELRH 65


>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type
           dioxygenase, non-heme iron protein; HET: DHB; 2.20A
           {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
          Length = 139

 Score = 24.9 bits (54), Expect = 6.5
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 82  LGQMCYHMSEKEQRTAFLETRQ--CLEMRLVIEEQSA 116
           L Q    + + E R  F         E  L    ++A
Sbjct: 37  LNQFAMSLMKAENRERFKADESAYLDEWNLTPAAKAA 73


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,902,076
Number of extensions: 98609
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 6
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (23.9 bits)