RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13603
         (133 letters)



>d1b4ua_ a.88.1.1 (A:) LigA subunit of an aromatic-ring-opening
           dioxygenase LigAB {Sphingomonas paucimobilis, formerly
           Pseudomonas paucimobilis [TaxId: 13689]}
          Length = 132

 Score = 24.7 bits (54), Expect = 3.3
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 82  LGQMCYHMSEKEQRTAFLETRQ--CLEMRLVIEEQSA 116
           L Q    + + E R  F         E  L    ++A
Sbjct: 30  LNQFAMSLMKAENRERFKADESAYLDEWNLTPAAKAA 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 460,010
Number of extensions: 18287
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 4
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.0 bits)