BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13604
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BDG|A Chain A, Hexokinase From Schistosoma Mansoni Complexed With Glucose
Length = 451
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 5 SGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKT-FRLLLAEDGSGKG 63
+G A ++RRI+R ++T+ VDGSLYK+HP+ + + L P T F L L+EDGSGKG
Sbjct: 380 AGIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGSGKG 439
Query: 64 AGLASAIALK 73
A +A +
Sbjct: 440 AAAIAASCTR 449
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 92 SGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKT-FRLLLAEDGSGKG 150
+G A ++RRI+R ++T+ VDGSLYK+HP+ + + L P T F L L+EDGSGKG
Sbjct: 380 AGIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGSGKG 439
Query: 151 AGLASAIALK 160
A +A +
Sbjct: 440 AAAIAASCTR 449
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 63.5 bits (153), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLGAFHN 79
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L H
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLAEQHR 468
Query: 80 FI 81
I
Sbjct: 469 QI 470
Score = 63.2 bits (152), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 63.2 bits (152), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 99 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 158
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 159 LKL 161
++L
Sbjct: 909 VRL 911
Score = 62.0 bits (149), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 107 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 162
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLA 464
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 63.5 bits (153), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLGAFHN 79
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L H
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLAEQHR 468
Query: 80 FI 81
I
Sbjct: 469 QI 470
Score = 63.2 bits (152), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 63.2 bits (152), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 99 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 158
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 159 LKL 161
++L
Sbjct: 909 VRL 911
Score = 62.0 bits (149), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 107 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 162
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLA 464
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 63.5 bits (153), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLGAFHN 79
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L H
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLAEQHR 468
Query: 80 FI 81
I
Sbjct: 469 QI 470
Score = 63.2 bits (152), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 63.2 bits (152), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 99 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 158
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 159 LKL 161
++L
Sbjct: 909 VRL 911
Score = 62.0 bits (149), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 107 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 162
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLA 464
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 63.5 bits (153), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLGAFHN 79
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L H
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLAEQHR 468
Query: 80 FI 81
I
Sbjct: 469 QI 470
Score = 63.2 bits (152), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 63.2 bits (152), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 99 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 158
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 159 LKL 161
++L
Sbjct: 909 VRL 911
Score = 62.0 bits (149), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 107 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 162
T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVAYRLA 464
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 62.8 bits (151), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 5 SGTAVLVRRI------DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAED 58
+G A +V +I D ++T+ VDG+LYK HP + + ++ L P T LL+ED
Sbjct: 836 AGMAAVVEKIRENRGLDHLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCTVSFLLSED 895
Query: 59 GSGKGAGLASAIALKL 74
GSGKGA L +A+ ++L
Sbjct: 896 GSGKGAALITAVGVRL 911
Score = 62.8 bits (151), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 92 SGTAVLVRRI------DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAED 145
+G A +V +I D ++T+ VDG+LYK HP + + ++ L P T LL+ED
Sbjct: 836 AGMAAVVEKIRENRGLDHLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCTVSFLLSED 895
Query: 146 GSGKGAGLASAIALKL 161
GSGKGA L +A+ ++L
Sbjct: 896 GSGKGAALITAVGVRL 911
Score = 62.8 bits (151), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLGAFHN 79
T+ VDGSLYK HP+ K ++ LVP+ R LL+E G+GKGA + +A+A +L H
Sbjct: 409 TVGVDGSLYKMHPQYSRRFHKTLRRLVPDSDVRFLLSESGTGKGAAMVTAVAYRLAEQHR 468
Query: 80 FI 81
I
Sbjct: 469 QI 470
Score = 61.2 bits (147), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 107 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 162
T+ VDGSLYK HP+ K ++ LVP+ R LL+E G+GKGA + +A+A +L
Sbjct: 409 TVGVDGSLYKMHPQYSRRFHKTLRRLVPDSDVRFLLSESGTGKGAAMVTAVAYRLA 464
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 62.0 bits (149), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 37/59 (62%)
Query: 20 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLGAFH 78
TI VDGS+YK HP L K ++ LVP R L +EDGSGKGA + +A+A +L H
Sbjct: 395 TIGVDGSVYKKHPHFAKRLHKTVRRLVPGCDVRFLRSEDGSGKGAAMVTAVAYRLADQH 453
Score = 60.8 bits (146), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 107 TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 162
TI VDGS+YK HP L K ++ LVP R L +EDGSGKGA + +A+A +L
Sbjct: 395 TIGVDGSVYKKHPHFAKRLHKTVRRLVPGCDVRFLRSEDGSGKGAAMVTAVAYRLA 450
Score = 57.0 bits (136), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 5 SGTAVLVRRI------DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAED 58
+G A +V RI D +T+ VDG+LYK HP + + ++ L P L +ED
Sbjct: 822 AGMAAVVDRIRENRGLDALKVTVGVDGTLYKLHPHFAKVMHETVKDLAPKCDVSFLQSED 881
Query: 59 GSGKGAGLASAIALKL 74
GSGKGA L +A+A ++
Sbjct: 882 GSGKGAALITAVACRI 897
Score = 57.0 bits (136), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 92 SGTAVLVRRI------DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAED 145
+G A +V RI D +T+ VDG+LYK HP + + ++ L P L +ED
Sbjct: 822 AGMAAVVDRIRENRGLDALKVTVGVDGTLYKLHPHFAKVMHETVKDLAPKCDVSFLQSED 881
Query: 146 GSGKGAGLASAIALKL 161
GSGKGA L +A+A ++
Sbjct: 882 GSGKGAALITAVACRI 897
>pdb|3HM8|A Chain A, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|B Chain B, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|C Chain C, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
pdb|3HM8|D Chain D, Crystal Structure Of The C-Terminal Hexokinase Domain Of
Human Hk3
Length = 445
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 5 SGTAVLVRRIDRDD------ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAED 58
+G A +V +I + +++ VDG+LYK HPR + ++ L P L +ED
Sbjct: 365 AGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSED 424
Query: 59 GSGKGAGLASAIALKL 74
GSGKGA L +A+A +L
Sbjct: 425 GSGKGAALVTAVACRL 440
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 92 SGTAVLVRRIDRDD------ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAED 145
+G A +V +I + +++ VDG+LYK HPR + ++ L P L +ED
Sbjct: 365 AGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSED 424
Query: 146 GSGKGAGLASAIALKL 161
GSGKGA L +A+A +L
Sbjct: 425 GSGKGAALVTAVACRL 440
>pdb|4DCH|A Chain A, Insights Into Glucokinase Activation Mechanism:
Observation Of Multiple Distinct Protein Conformations
Length = 473
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 19 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 73
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 404 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 458
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 106 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 160
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 404 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 458
>pdb|1V4T|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3H1V|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
Length = 451
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 19 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 73
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 390 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 444
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 106 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 160
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 390 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 444
>pdb|3IMX|A Chain A, Crystal Structure Of Human Glucokinase In Complex With A
Synthetic Activator
Length = 455
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 19 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 73
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 394 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 448
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 106 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 160
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 394 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 448
>pdb|3F9M|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose And
Activator Showing A Mobile Flap
pdb|3FGU|A Chain A, Catalytic Complex Of Human Glucokinase
pdb|3ID8|A Chain A, Ternary Complex Of Human Pancreatic Glucokinase
Crystallized With Activator, Glucose And Amp-Pnp
pdb|3IDH|A Chain A, Human Pancreatic Glucokinase In Complex With Glucose
pdb|3VEV|A Chain A, Glucokinase In Complex With An Activator And Glucose
pdb|3VF6|A Chain A, Glucokinase In Complex With Glucose And Activator
Length = 470
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 19 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 73
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 409 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 463
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 106 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 160
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 409 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 463
>pdb|3S41|A Chain A, Glucokinase In Complex With Activator And Glucose
pdb|4DHY|A Chain A, Crystal Structure Of Human Glucokinase In Complex With
Glucose And Activator
Length = 469
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 19 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 73
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 408 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 462
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 106 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 160
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 408 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 462
>pdb|3FR0|A Chain A, Human Glucokinase In Complex With 2-Amino Benzamide
Activator
pdb|3A0I|X Chain X, Human Glucokinase In Complex With A Synthetic Activator
pdb|3GOI|A Chain A, Human Glucokinase In Complex With A Synthetic Activator
Length = 455
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 19 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 73
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 394 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 448
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 106 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 160
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 394 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 448
>pdb|1V4S|A Chain A, Crystal Structure Of Human Glucokinase
pdb|3VEY|A Chain A, Glucokinase In Complex With Glucose And Atpgs
Length = 455
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 19 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 73
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 394 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 448
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 106 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 160
IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 394 ITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 448
>pdb|3QIC|A Chain A, The Structure Of Human Glucokinase E339k Mutation
Length = 470
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 19 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 73
IT+ VDG +YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 409 ITVGVDGXVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 463
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 106 ITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 160
IT+ VDG +YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 409 ITVGVDGXVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 463
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 89 FSISGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLL------VPNKTFRLLL 142
++ G A + ++ IA DGS+Y +P K K ++ + ++
Sbjct: 395 LAVCGIAAICQKRGYKTGHIAADGSVYNKYPGFKEAAAKGLRDIYGWTGDASKDPITIVP 454
Query: 143 AEDGSGKGAGLASAIALK 160
AEDGSG GA + +A++ K
Sbjct: 455 AEDGSGAGAAVIAALSEK 472
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 21 IAVDGSLYKYHPRLKHWLQKYIQLL------VPNKTFRLLLAEDGSGKGAGLASAIALK 73
IA DGS+Y +P K K ++ + ++ AEDGSG GA + +A++ K
Sbjct: 414 IAADGSVYNKYPGFKEAAAKGLRDIYGWTGDASKDPITIVPAEDGSGAGAAVIAALSEK 472
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 89 FSISGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLL-------VPNKTFRLL 141
++ G + + + IA DGS++ +P K + ++ + + + +L+
Sbjct: 394 LTVCGVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLV 453
Query: 142 LAEDGSGKGAGLASAIALK 160
AEDGSG GA + + + K
Sbjct: 454 AAEDGSGVGAAIIACLTQK 472
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 21 IAVDGSLYKYHPRLKHWLQKYIQLL-------VPNKTFRLLLAEDGSGKGAGLASAIALK 73
IA DGS++ +P K + ++ + + + +L+ AEDGSG GA + + + K
Sbjct: 413 IAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAEDGSGVGAAIIACLTQK 472
>pdb|1K97|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Aspartate And Citrulline
pdb|1K92|A Chain A, Crystal Structure Of Uncomplexed E. Coli Argininosuccinate
Synthetase
pdb|1KP2|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Atp
pdb|1KP3|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Atp And Citrulline
Length = 455
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 71 ALKLGAFHNFIMSHNFIMFSISGTAV----LVRRIDRDDITIAVDGSLYK 116
A++ GAFHN + + G AV LV + D + I DGS YK
Sbjct: 83 AIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYK 132
>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8
pdb|2NTY|B Chain B, Rop4-Gdp-Prone8
pdb|2WBL|A Chain A, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|B Chain B, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 365
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 52 RLLLAEDGSGKGAGLASAIAL 72
+LLL ED SG G G++SA+AL
Sbjct: 20 KLLLGEDMSGGGKGVSSALAL 40
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 139 RLLLAEDGSGKGAGLASAIAL 159
+LLL ED SG G G++SA+AL
Sbjct: 20 KLLLGEDMSGGGKGVSSALAL 40
>pdb|3O6C|A Chain A, Pyridoxal Phosphate Biosynthetic Protein Pdxj From
Campylobacter Jejuni
pdb|3O6D|A Chain A, Pyridoxal Phosphate Biosynthetic Protein Pdxj From
Campylobacter Jejuni In Complex With
Pyridoxine-5'-Phosphate
Length = 260
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 16 RDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKLG 75
R+++T +G L H +LK ++K + F ED A I L G
Sbjct: 97 REELT--TEGGLCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTG 154
Query: 76 AFHNFIMSHNFIMFSISGTAVLVRRIDRDDITI 108
+ N HN + +IS TA ++ +D+D T+
Sbjct: 155 HYANL---HNALFSNISHTAFALKELDQDKKTL 184
>pdb|2ODR|D Chain D, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 685
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 27 LYKYHPRLKHWLQ 39
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 114 LYKYHPRLKHWLQ 126
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
>pdb|2ODR|B Chain B, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 648
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 27 LYKYHPRLKHWLQ 39
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 114 LYKYHPRLKHWLQ 126
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
>pdb|2ODR|A Chain A, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 665
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 27 LYKYHPRLKHWLQ 39
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 114 LYKYHPRLKHWLQ 126
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
>pdb|2ODR|C Chain C, Methanococcus Maripaludis Phosphoseryl-Trna Synthetase
Length = 701
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 27 LYKYHPRLKHWLQ 39
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
Score = 27.7 bits (60), Expect = 3.5, Method: Composition-based stats.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 114 LYKYHPRLKHWLQ 126
+Y YHP+LK WL+
Sbjct: 301 VYAYHPKLKEWLE 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,953,319
Number of Sequences: 62578
Number of extensions: 202272
Number of successful extensions: 846
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 77
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)