RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13604
(167 letters)
>gnl|CDD|202746 pfam03727, Hexokinase_2, Hexokinase. Hexokinase (EC:2.7.1.1)
contains two structurally similar domains represented by
this family and pfam00349. Some members of the family
have two copies of each of these domains.
Length = 238
Score = 68.1 bits (167), Expect = 2e-14
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 90 SISGTAVLVRRI------DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLA 143
+G A ++++I + +T+ VDGS+YK +P K L + ++ L P+ + A
Sbjct: 164 CAAGLAAILQKIRENRGYEHLKVTVGVDGSVYKLYPGFKERLAETLRDLAPDCDVSFIPA 223
Query: 144 EDGSGKGAGLASAIA 158
EDGSGKGA L +A+A
Sbjct: 224 EDGSGKGAALVAAVA 238
Score = 67.7 bits (166), Expect = 2e-14
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R + +T+ VDGS+YK +P K L + ++ L P+ + AEDGSGKGA L +A+A
Sbjct: 179 RGYEHLKVTVGVDGSVYKLYPGFKERLAETLRDLAPDCDVSFIPAEDGSGKGAALVAAVA 238
>gnl|CDD|240270 PTZ00107, PTZ00107, hexokinase; Provisional.
Length = 464
Score = 50.4 bits (121), Expect = 7e-08
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 7 TAVLVR-RIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKT--FRLLLAEDGSGKG 63
A + R + T+A+DGS+Y +P + LQ+YI ++ LA+DGSGKG
Sbjct: 393 AAPAKKTRTVQGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADDGSGKG 452
Query: 64 AGLASAIA 71
A + +A+
Sbjct: 453 AAIIAAMV 460
Score = 50.4 bits (121), Expect = 7e-08
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 94 TAVLVR-RIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKT--FRLLLAEDGSGKG 150
A + R + T+A+DGS+Y +P + LQ+YI ++ LA+DGSGKG
Sbjct: 393 AAPAKKTRTVQGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADDGSGKG 452
Query: 151 AGLASAIA 158
A + +A+
Sbjct: 453 AAIIAAMV 460
>gnl|CDD|227359 COG5026, COG5026, Hexokinase [Carbohydrate transport and
metabolism].
Length = 466
Score = 37.8 bits (88), Expect = 0.001
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 7 TAVLVRRID-----RDDITIAVDGSLYKYHPRLKHWLQKYIQLLV--PNKTFRLLLAEDG 59
AV + I + DGS+ + +P + L++ ++ L+ + ++ AEDG
Sbjct: 388 AAVPIAAIVIKTGAYKAYHVGADGSVIERYPGFRSMLREALKALLGEEGEKIKIKPAEDG 447
Query: 60 SGKGAGLASAIALK 73
SG GA L + +A K
Sbjct: 448 SGLGAALCALLAQK 461
Score = 37.8 bits (88), Expect = 0.001
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 94 TAVLVRRID-----RDDITIAVDGSLYKYHPRLKHWLQKYIQLLV--PNKTFRLLLAEDG 146
AV + I + DGS+ + +P + L++ ++ L+ + ++ AEDG
Sbjct: 388 AAVPIAAIVIKTGAYKAYHVGADGSVIERYPGFRSMLREALKALLGEEGEKIKIKPAEDG 447
Query: 147 SGKGAGLASAIALK 160
SG GA L + +A K
Sbjct: 448 SGLGAALCALLAQK 461
>gnl|CDD|178502 PLN02914, PLN02914, hexokinase.
Length = 490
Score = 34.5 bits (79), Expect = 0.018
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 21 IAVDGSLYKYHPRLKHWLQKYI-QLLVPNKTFRLLL--AEDGSGKGAGLASA 69
+A+DG LY+ +P+ + ++Q + +LL + + + +DGSG GA L +A
Sbjct: 434 VAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAALLAA 485
Score = 34.5 bits (79), Expect = 0.018
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 108 IAVDGSLYKYHPRLKHWLQKYI-QLLVPNKTFRLLL--AEDGSGKGAGLASA 156
+A+DG LY+ +P+ + ++Q + +LL + + + +DGSG GA L +A
Sbjct: 434 VAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAALLAA 485
>gnl|CDD|215226 PLN02405, PLN02405, hexokinase.
Length = 497
Score = 30.6 bits (69), Expect = 0.41
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 11 VRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV---PNKTFRLLLAEDGSGKGAGLA 67
V+ ++ IA+DG L++++ ++ ++ L+ +++ + + DGSG GA L
Sbjct: 426 VKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSNDGSGIGAALL 485
Query: 68 SA 69
+A
Sbjct: 486 AA 487
Score = 30.6 bits (69), Expect = 0.41
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 98 VRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV---PNKTFRLLLAEDGSGKGAGLA 154
V+ ++ IA+DG L++++ ++ ++ L+ +++ + + DGSG GA L
Sbjct: 426 VKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSNDGSGIGAALL 485
Query: 155 SA 156
+A
Sbjct: 486 AA 487
>gnl|CDD|235434 PRK05370, PRK05370, argininosuccinate synthase; Validated.
Length = 447
Score = 29.9 bits (68), Expect = 0.58
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 65 GLASAIALKLGAFHNFIMSHNFIMFSIS--GTAV----LVRRIDRDDITIAVDGSLYK 116
G+A A++ GAFH I + F+ + G AV LV + D + I DGS YK
Sbjct: 81 GIA---AIQCGAFH--ISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYK 133
>gnl|CDD|217715 pfam03759, PRONE, PRONE (Plant-specific Rop nucleotide
exchanger). This is a functional guanine exchange
factor (GEF) of plant Rho GTPase.
Length = 360
Score = 28.9 bits (65), Expect = 1.1
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 52 RLLLAEDGSGKGAGLASAIAL 72
+LLL ED SG G G+++A+AL
Sbjct: 14 KLLLGEDMSGGGKGVSTALAL 34
Score = 28.9 bits (65), Expect = 1.1
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 139 RLLLAEDGSGKGAGLASAIAL 159
+LLL ED SG G G+++A+AL
Sbjct: 14 KLLLGEDMSGGGKGVSTALAL 34
>gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase
S8 family domain in Lantiobiotic
(lanthionine-containing antibiotics) specific
proteases. Lantiobiotic (lanthionine-containing
antibiotics) specific proteases are very similar in
structure to serine proteases. Lantibiotics are
ribosomally synthesised antimicrobial agents derived
from ribosomally synthesised peptides with
antimicrobial activities against Gram-positive
bacteria. The proteases that cleave the N-terminal
leader peptides from lantiobiotics include: epiP,
nsuP, mutP, and nisP. EpiP, from Staphylococcus, is
thought to cleave matured epidermin. NsuP, a
dehydratase from Streptococcus and NisP, a
membrane-anchored subtilisin-like serine protease from
Lactococcus cleave nisin. MutP is highly similar to
epiP and nisP and is thought to process the prepeptide
mutacin III of S. mutans. Members of the peptidases S8
(subtilisin and kexin) and S53 (sedolisin) clan include
endopeptidases and exopeptidases. The S8 family has an
Asp/His/Ser catalytic triad similar to that found in
trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. Serine acts as a nucleophile, aspartate as an
electrophile, and histidine as a base. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of subtilisin. The serine residue here
is the nucleophilic equivalent of the serine residue in
the S8 family, while glutamic acid has the same role
here as the histidine base. However, the aspartic
acid residue that acts as an electrophile is quite
different. In S53 the it follows glutamic acid, while
in S8 it precedes histidine. The stability of these
enzymes may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. There is a great diversity in the
characteristics of their members: some contain
disulfide bonds, some are intracellular while others
are extracellular, some function at extreme
temperatures, and others at high or low pH values.
Length = 294
Score = 27.7 bits (62), Expect = 2.5
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 19 ITIAV-DGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLA---------EDGSGKGAGLAS 68
+T+AV D + HP LK+ + Y + LVP + A D G G +A
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAG 61
Query: 69 AIA 71
IA
Sbjct: 62 QIA 64
Score = 27.7 bits (62), Expect = 2.5
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 106 ITIAV-DGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLA---------EDGSGKGAGLAS 155
+T+AV D + HP LK+ + Y + LVP + A D G G +A
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAG 61
Query: 156 AIA 158
IA
Sbjct: 62 QIA 64
>gnl|CDD|236816 PRK10999, malF, maltose transporter membrane protein; Provisional.
Length = 520
Score = 27.6 bits (62), Expect = 3.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 41 YIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
Y LLV + T+R+ E G G+ GLA+AIA
Sbjct: 469 YTDLLV-SYTYRIAF-EGGGGQDFGLAAAIA 497
Score = 27.6 bits (62), Expect = 3.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 128 YIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 158
Y LLV + T+R+ E G G+ GLA+AIA
Sbjct: 469 YTDLLV-SYTYRIAF-EGGGGQDFGLAAAIA 497
>gnl|CDD|149722 pfam08750, CNP1, CNP1-like family. This family of proteins are
likely to be lipoproteins. CNP1 (cryptic neisserial
protein) has been expressed in E. coli and shown to be
localised periplasmicly.
Length = 139
Score = 26.5 bits (59), Expect = 5.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 84 HNFIMFSISGTAVLVRRIDRDDITIAVDG 112
N + F +S L +D +++ DG
Sbjct: 23 ENLLPFDVSPATSLRFFVDAKSLSVGTDG 51
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family,
Acetolactate synthase (ALS) subfamily, TPP-binding
module; composed of proteins similar to Klebsiella
pneumoniae ALS, a catabolic enzyme required for
butanediol fermentation. ALS catalyzes the conversion
of 2 molecules of pyruvate to acetolactate and carbon
dioxide. ALS does not contain FAD, and requires TPP and
a divalent metal cation for activity.
Length = 177
Score = 26.5 bits (59), Expect = 5.7
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 11 VRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAI 70
+R + DD + +D +K W+ +Y + PN L++ + G L AI
Sbjct: 8 LRAVMGDDDIVLLDVGAHKI------WMARYYRTYAPNT---CLISNGLATMGVALPGAI 58
Query: 71 ALKL 74
KL
Sbjct: 59 GAKL 62
Score = 26.5 bits (59), Expect = 5.7
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 98 VRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAI 157
+R + DD + +D +K W+ +Y + PN L++ + G L AI
Sbjct: 8 LRAVMGDDDIVLLDVGAHKI------WMARYYRTYAPNT---CLISNGLATMGVALPGAI 58
Query: 158 ALKL 161
KL
Sbjct: 59 GAKL 62
>gnl|CDD|225132 COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope
biogenesis, outer membrane].
Length = 340
Score = 26.9 bits (60), Expect = 6.4
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 16/99 (16%)
Query: 69 AIALKLGAFHNFIMSHNFIMFSISGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKY 128
I G + + +F ++ A+L D D + +L L++
Sbjct: 135 VIPYLAGEEASVAATKSFTASLLALLALL-AEYDGDA---QLLAALPDLPLEAAKALEED 190
Query: 129 IQLLVPNKTFRLLLAED------GSGKGAGLASAIALKL 161
Q A++ GSG G A ALKL
Sbjct: 191 AQEFA------EEYADEDRIYTLGSGPLYGAAYEAALKL 223
>gnl|CDD|222433 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosphate oxidase.
Length = 167
Score = 26.4 bits (59), Expect = 6.7
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 2 FSFSGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWL 38
+ +G V +RD + + HP K WL
Sbjct: 101 ITLTGKLKKVPSEERD----FAKKAFFSRHPDAKDWL 133
Score = 26.0 bits (58), Expect = 8.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 89 FSISGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWL 125
+++G V +RD + + HP K WL
Sbjct: 101 ITLTGKLKKVPSEERD----FAKKAFFSRHPDAKDWL 133
>gnl|CDD|200399 TIGR04148, GG_samocin_CFB, radical SAM peptide maturase,
GG-Bacteroidales family. Members of this protein family
are radical SAM enzymes (pfam04055) with the additional
C-terminal region (TIGR04085) that is frequently a
marker of peptide modification. Many members of this
family are found in the vicinity of one or several ORFs
encoding short polypeptides with a Gly-Gly motif (common
for bacteriocin leader peptide cleavage), followed by a
Cys-rich patch and then poorly conserved sequences.
Length = 411
Score = 26.6 bits (59), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 38 LQKYIQLLVPNKTFRLLLAEDGSGKGAG 65
L+KY+ LV F LL++ DG G
Sbjct: 123 LRKYMDFLV-ENDFHLLISLDGDKYNDG 149
Score = 26.6 bits (59), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 125 LQKYIQLLVPNKTFRLLLAEDGSGKGAG 152
L+KY+ LV F LL++ DG G
Sbjct: 123 LRKYMDFLV-ENDFHLLISLDGDKYNDG 149
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.414
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,955,719
Number of extensions: 872812
Number of successful extensions: 1400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1392
Number of HSP's successfully gapped: 47
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)