RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13604
(167 letters)
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase,
structural genomics consortium, SGC, A enzyme,
ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo
sapiens}
Length = 445
Score = 74.7 bits (183), Expect = 2e-16
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R ++ +++ VDG+LYK HPR + ++ L P L +EDGSGKGA L +A+A
Sbjct: 378 RGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVA 437
Query: 72 LKL 74
+L
Sbjct: 438 CRL 440
Score = 74.7 bits (183), Expect = 2e-16
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 99 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 158
R ++ +++ VDG+LYK HPR + ++ L P L +EDGSGKGA L +A+A
Sbjct: 378 RGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVA 437
Query: 159 LKL 161
+L
Sbjct: 438 CRL 440
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
mutation, glycolysis, nucleotide-binding, transfera;
HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
1v4t_A*
Length = 470
Score = 73.2 bits (179), Expect = 6e-16
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 90 SISGTAVLVRRIDRDDI---TIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDG 146
++G +R +D+ T+ VDGS+YK HP K ++ L P+ + +E+G
Sbjct: 390 GLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEG 449
Query: 147 SGKGAGLASAIALKLGA 163
SG+GA L SA+A K
Sbjct: 450 SGRGAALVSAVACKKAC 466
Score = 73.2 bits (179), Expect = 7e-16
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 15 DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALKL 74
D IT+ VDGS+YK HP K ++ L P+ + +E+GSG+GA L SA+A K
Sbjct: 405 DVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACKK 464
Query: 75 GA 76
Sbjct: 465 AC 466
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 73.2 bits (179), Expect = 7e-16
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 72 LKL 74
++L
Sbjct: 909 VRL 911
Score = 73.2 bits (179), Expect = 7e-16
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 99 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 158
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 849 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 908
Query: 159 LKL 161
++L
Sbjct: 909 VRL 911
Score = 46.3 bits (109), Expect = 1e-06
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
+ R T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGKGA + +A+A
Sbjct: 401 KGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGKGAAMVTAVA 460
Query: 72 LKLGAFHNFIMSHNFIM 88
+L H I
Sbjct: 461 YRLAEQHRQIEETLAHF 477
Score = 44.7 bits (105), Expect = 4e-06
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 99 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGK 149
+ R T+ VDGSLYK HP+ K ++ LVP+ R LL+E GSGK
Sbjct: 401 KGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSESGSGK 451
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 69.6 bits (170), Expect = 1e-14
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 6 GTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVP-NKTFRLLLAEDGSGKGA 64
G A ++RRI+R ++T+ VDGSLYK+HP+ + + L P N F L L+EDGSGKGA
Sbjct: 381 GIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGSGKGA 440
Query: 65 GLASAIALK 73
+A +
Sbjct: 441 AAIAASCTR 449
Score = 69.6 bits (170), Expect = 1e-14
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 93 GTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVP-NKTFRLLLAEDGSGKGA 151
G A ++RRI+R ++T+ VDGSLYK+HP+ + + L P N F L L+EDGSGKGA
Sbjct: 381 GIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGSGKGA 440
Query: 152 GLASAIALK 160
+A +
Sbjct: 441 AAIAASCTR 449
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression
binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A
{Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A*
3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Length = 485
Score = 66.2 bits (161), Expect = 2e-13
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 6 GTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV-------PNKTFRLLLAED 58
G + + + IA DGS++ +P K + ++ + + +L+ AED
Sbjct: 398 GVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAED 457
Query: 59 GSGKGAGLASAIALK 73
GSG GA + + + K
Sbjct: 458 GSGVGAAIIACLTQK 472
Score = 66.2 bits (161), Expect = 2e-13
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 93 GTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV-------PNKTFRLLLAED 145
G + + + IA DGS++ +P K + ++ + + +L+ AED
Sbjct: 398 GVSAICDKRGYKTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAED 457
Query: 146 GSGKGAGLASAIALK 160
GSG GA + + + K
Sbjct: 458 GSGVGAAIIACLTQK 472
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 60.1 bits (145), Expect = 2e-11
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 10 LVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV-------PNKTFRLLLAEDGSGK 62
+ ++ IA GS Y + +K + A DG G
Sbjct: 376 ICQKKGYSSGHIAAXGSXRSY-SGFSXNSATXNXNIYGWPQSAXXSKPIXITPAIDGXGA 434
Query: 63 GAGLASAIA 71
+ + +IA
Sbjct: 435 ASXVIXSIA 443
Score = 60.1 bits (145), Expect = 2e-11
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 97 LVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV-------PNKTFRLLLAEDGSGK 149
+ ++ IA GS Y + +K + A DG G
Sbjct: 376 ICQKKGYSSGHIAAXGSXRSY-SGFSXNSATXNXNIYGWPQSAXXSKPIXITPAIDGXGA 434
Query: 150 GAGLASAIA 158
+ + +IA
Sbjct: 435 ASXVIXSIA 443
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.016
Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 59/157 (37%)
Query: 3 SFSGTAVLVRRIDRDDIT---IAVDGS---LYKYHPRLKHWLQKYI----QLLVPNKTFR 52
G + + +T IA S + + L +I PN +
Sbjct: 266 YLKGATGHSQGL----VTAVAIAETDSWESFFVSVRKAITVLF-FIGVRCYEAYPNTSLP 320
Query: 53 LLLAEDGSGKGAGLASAIALKLGAFHNFIMSHNFIMFSISGT--AVLVRRIDR------- 103
+ ED G+ S M SIS + +++
Sbjct: 321 PSILEDSLENNEGVPSP------------------MLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 104 -DDITIA---------VDG---SLYKYHPRLKHWLQK 127
+ I+ V G SLY L L+K
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLY----GLNLTLRK 395
Score = 29.2 bits (65), Expect = 0.66
Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 42/167 (25%)
Query: 26 SLYK-YHPRLKHWLQKYIQLLVP------------NKTFRLL--LAEDGSGKGAG-LASA 69
LY+ YH + ++ + L + +L L + L S
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 70 -IALK---LGAFHNFI-------MSHNFIMFSISGTAVLVRRIDRDDIT---IAVDGS-- 113
I+ + +++ + + + G + + +T IA S
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL----VTAVAIAETDSWE 290
Query: 114 -LYKYHPRLKHWLQKYI----QLLVPNKTFRLLLAEDGSGKGAGLAS 155
+ + L +I PN + + ED G+ S
Sbjct: 291 SFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Score = 27.7 bits (61), Expect = 2.5
Identities = 30/196 (15%), Positives = 57/196 (29%), Gaps = 64/196 (32%)
Query: 17 DDI-TIAV--DGSLYKYHPRLKHWLQKYIQ-LLVPNKTFR-----LLL--AEDGSGK--- 62
+DI +A + K ++ YI ++ + F L +G+ +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 63 ---GAGLASAIALK-LGAFHNFIMSHNFIMFSISGTAVLVRRIDRDDITIAVDGSLYKYH 118
G G + + L + H + I +A + + R + K
Sbjct: 159 IFGGQG-NTDDYFEELRDLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAE------KVF 209
Query: 119 PR---LKHWLQK--------Y-------------IQL-----------LVPNKTFRLLLA 143
+ + WL+ Y IQL P + L
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 144 EDGSGKGAGLASAIAL 159
+G GL +A+A+
Sbjct: 270 --ATGHSQGLVTAVAI 283
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.8
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 25/48 (52%)
Query: 26 SLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 73
+L K LK L A+D A A+A+K
Sbjct: 21 ALKKLQASLK------------------LYADDS-------APALAIK 43
Score = 26.8 bits (58), Expect = 2.8
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 25/48 (52%)
Query: 113 SLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIALK 160
+L K LK L A+D A A+A+K
Sbjct: 21 ALKKLQASLK------------------LYADDS-------APALAIK 43
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange
factor, signaling protein; HET: MSE; 2.20A {Arabidopsis
thaliana} PDB: 2nty_A* 2wbl_A
Length = 365
Score = 27.0 bits (59), Expect = 3.1
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 52 RLLLAEDGSGKGAGLASAIAL 72
+LLL ED SG G G++SA+AL
Sbjct: 20 KLLLGEDMSGGGKGVSSALAL 40
Score = 27.0 bits (59), Expect = 3.1
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 139 RLLLAEDGSGKGAGLASAIAL 159
+LLL ED SG G G++SA+AL
Sbjct: 20 KLLLGEDMSGGGKGVSSALAL 40
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 26.3 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 11 VRRIDRDDITIAV 23
+ R+ RDDITI V
Sbjct: 439 LARMYRDDITIIV 451
Score = 26.3 bits (57), Expect = 5.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 98 VRRIDRDDITIAV 110
+ R+ RDDITI V
Sbjct: 439 LARMYRDDITIIV 451
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 26.4 bits (59), Expect = 5.9
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 13/35 (37%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLK---------HW 37
+ +DR +I A+ SL RL+ HW
Sbjct: 103 QALDRKNIREALHDSL----KRLQTDYLDLYQVHW 133
Score = 26.4 bits (59), Expect = 5.9
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 13/35 (37%)
Query: 99 RRIDRDDITIAVDGSLYKYHPRLK---------HW 124
+ +DR +I A+ SL RL+ HW
Sbjct: 103 QALDRKNIREALHDSL----KRLQTDYLDLYQVHW 133
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate;
GTP-dependent, signaling protein, lyase; 2.30A
{Corynebacterium glutamicum}
Length = 610
Score = 26.3 bits (57), Expect = 6.3
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 22 AVDGSLYKYHPRLKHWLQKYIQLLVPNKTF 51
+ G + L +W+ ++L P
Sbjct: 8 GLQGEAPTKNKELLNWIADAVELFQPEAVV 37
Score = 26.3 bits (57), Expect = 6.3
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 109 AVDGSLYKYHPRLKHWLQKYIQLLVPNKTF 138
+ G + L +W+ ++L P
Sbjct: 8 GLQGEAPTKNKELLNWIADAVELFQPEAVV 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.414
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,713,764
Number of extensions: 166595
Number of successful extensions: 752
Number of sequences better than 10.0: 1
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 30
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)