RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13604
(167 letters)
>d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 78.4 bits (193), Expect = 6e-19
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 12 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 71
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 179 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 238
Query: 72 LKL 74
++L
Sbjct: 239 VRL 241
Score = 78.4 bits (193), Expect = 6e-19
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 99 RRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDGSGKGAGLASAIA 158
R +DR ++T+ VDG+LYK HP + + ++ L P LL+EDGSGKGA L +A+
Sbjct: 179 RGLDRLNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVG 238
Query: 159 LKL 161
++L
Sbjct: 239 VRL 241
>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 78.4 bits (193), Expect = 7e-19
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 89 FSISGTAVLVRRI------DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLL 142
+ ++ R+ R T+ VDGSLYK HP+ K ++ LVP+ R LL
Sbjct: 163 LVAATLGAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLL 222
Query: 143 AEDGSGKGAGLASAIALKL 161
+E GSGKGA + +A+A +L
Sbjct: 223 SESGSGKGAAMVTAVAYRL 241
Score = 77.6 bits (191), Expect = 1e-18
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 5 SGTAVLVRRI------DRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAED 58
+ ++ R+ R T+ VDGSLYK HP+ K ++ LVP+ R LL+E
Sbjct: 166 ATLGAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPDSDVRFLLSES 225
Query: 59 GSGKGAGLASAIALKL 74
GSGKGA + +A+A +L
Sbjct: 226 GSGKGAAMVTAVAYRL 241
>d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 243
Score = 76.1 bits (187), Expect = 5e-18
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 81 IMSHNFIMFSISGTAVLVRRIDRD------DITIAVDGSLYKYHPRLKHWLQKYIQLLVP 134
+S +G A ++ R+ IT+ VDGS+YK HP K ++ L P
Sbjct: 155 SVSTRAAHMCSAGLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTP 214
Query: 135 NKTFRLLLAEDGSGKGAGLASAIALKL 161
+ + +E+GSG+GA L SA+A K
Sbjct: 215 SCEITFIESEEGSGRGAALVSAVACKK 241
Score = 74.9 bits (184), Expect = 1e-17
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 6 GTAVLVRRIDRD------DITIAVDGSLYKYHPRLKHWLQKYIQLLVPNKTFRLLLAEDG 59
G A ++ R+ IT+ VDGS+YK HP K ++ L P+ + +E+G
Sbjct: 167 GLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEG 226
Query: 60 SGKGAGLASAIALKL 74
SG+GA L SA+A K
Sbjct: 227 SGRGAALVSAVACKK 241
>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 237
Score = 76.0 bits (187), Expect = 5e-18
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 2 FSFSGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVP-NKTFRLLLAEDGS 60
+ +G A ++RRI+R ++T+ VDGSLYK+HP+ + + L P N F L L+EDGS
Sbjct: 167 LAGAGIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGS 226
Query: 61 GKGAGLASA 69
GKGA +A
Sbjct: 227 GKGAAAIAA 235
Score = 75.7 bits (186), Expect = 5e-18
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 89 FSISGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLVP-NKTFRLLLAEDGS 147
+ +G A ++RRI+R ++T+ VDGSLYK+HP+ + + L P N F L L+EDGS
Sbjct: 167 LAGAGIACILRRINRSEVTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGS 226
Query: 148 GKGAGLASA 156
GKGA +A
Sbjct: 227 GKGAAAIAA 235
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 262
Score = 75.3 bits (185), Expect = 1e-17
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 89 FSISGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV-------PNKTFRLL 141
S+ G A + ++ IA DGS+Y +P K ++ + + +++
Sbjct: 171 LSVCGIAAICQKRGYKTGHIAADGSVYNRYPGFKEKAANALKDIYGWTQTSLDDYPIKIV 230
Query: 142 LAEDGSGKGAGLASAIALKL 161
AEDGSG GA + +A+A K
Sbjct: 231 PAEDGSGAGAAVIAALAQKR 250
Score = 74.5 bits (183), Expect = 3e-17
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 5 SGTAVLVRRIDRDDITIAVDGSLYKYHPRLKHWLQKYIQLLV-------PNKTFRLLLAE 57
G A + ++ IA DGS+Y +P K ++ + + +++ AE
Sbjct: 174 CGIAAICQKRGYKTGHIAADGSVYNRYPGFKEKAANALKDIYGWTQTSLDDYPIKIVPAE 233
Query: 58 DGSGKGAGLASAIALKL 74
DGSG GA + +A+A K
Sbjct: 234 DGSGAGAAVIAALAQKR 250
>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus
subtilis [TaxId: 1423]}
Length = 315
Score = 27.0 bits (59), Expect = 1.4
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 45 LVPNKTFRLLLAEDGSGKGAGLASAIALKLGAFHNFIMSHNFIMFSISGTAVLVR 99
+ +++F + +GSG LK G +FI+ F+I GT L+
Sbjct: 260 MAQDESFLICSVIEGSGLLKYEDKTCPLKKG--DHFILPAQMPDFTIKGTCTLIV 312
>d1y2ia_ d.230.5.1 (A:) Hypothetical protein YbjQ {Shigella flexneri
[TaxId: 623]}
Length = 109
Score = 24.7 bits (54), Expect = 3.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 85 NFIMFSISGTAVLVRR 100
+ +M S+SGTAV RR
Sbjct: 92 SMLMVSVSGTAVKTRR 107
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD)
{Bacillus halodenitrificans [TaxId: 1482]}
Length = 111
Score = 24.6 bits (53), Expect = 4.6
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 58 DGSGKGAG-LASAIALKLGAFHNFIMSHNFIMFSISGTAVLV 98
+G GK G +A I K G+F F G+
Sbjct: 1 NGGGKPTGEVADKINDKYGSFEKFQEEFAAAAAGRFGSGWAW 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.414
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 637,647
Number of extensions: 29932
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 19
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)