BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13606
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 60/90 (66%)
Query: 473 FDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVS 532
F +V++LFSD+V FT ICS+ +P++V++MLNA+Y+ FD VYKVETIGDAY V
Sbjct: 12 FSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAG 71
Query: 533 GAPEREHNHAEKVCDMALDMVDAITDLKDP 562
G + HA ++ MAL M++ ++ P
Sbjct: 72 GLHKESDTHAVQIALMALKMMELSDEVMSP 101
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 57/90 (63%)
Query: 473 FDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVS 532
+D S+LF+D+V FTE S P ++V L+ +YS FD L +++ + K+E GD+YMVVS
Sbjct: 8 YDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVS 67
Query: 533 GAPEREHNHAEKVCDMALDMVDAITDLKDP 562
G P +H + + D ALDM + LKDP
Sbjct: 68 GVPRPRPDHTQALADFALDMTNVAAQLKDP 97
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 61/89 (68%), Gaps = 7/89 (7%)
Query: 473 FDSVSILFSDVVTFTEICSRIT----PMEVVSMLNAMYSIFDTLTERNR---VYKVETIG 525
+D+V+ILFS +V F CS+ M++V++LN +Y+ FDTLT+ + VYKVET+G
Sbjct: 10 YDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVG 69
Query: 526 DAYMVVSGAPEREHNHAEKVCDMALDMVD 554
D YM VSG PE +HA +C +ALDM++
Sbjct: 70 DKYMTVSGLPEPCIHHARSICHLALDMME 98
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 7/89 (7%)
Query: 473 FDSVSILFSDVVTFTEICSRIT----PMEVVSMLNAMYSIFDTLTERNR---VYKVETIG 525
+D+V+ILFS +V F CS+ M++V++LN +Y+ FDTLT+ + VYKVET+
Sbjct: 11 YDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVC 70
Query: 526 DAYMVVSGAPEREHNHAEKVCDMALDMVD 554
D YM VSG PE +HA +C +ALDM++
Sbjct: 71 DKYMTVSGLPEPCIHHARSICHLALDMME 99
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMV 530
Q D+VSILF+D+ FT + S+ T E+V LN +++ FD L N +++ +GD Y
Sbjct: 22 QKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYC 81
Query: 531 VSGAPEREHNHAEKVCDMALDMVDAITDLKDPSTGIT 567
VSG PE +HA +M +DM++AI+ +++ TG+
Sbjct: 82 VSGLPEARADHAHCCVEMGMDMIEAISLVREM-TGVN 117
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMV 530
Q D+VSILF+D+ FT + S+ T E+V LN +++ FD L N +++ +GD Y
Sbjct: 30 QKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYC 89
Query: 531 VSGAPEREHNHAEKVCDMALDMVDAITDLKDPSTGIT 567
VSG PE +HA +M +DM++AI+ +++ TG+
Sbjct: 90 VSGLPEARADHAHCCVEMGMDMIEAISLVREM-TGVN 125
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMV 530
Q D+VSILF+D+ FT + S+ T E+V LN +++ FD L N +++ +GD Y
Sbjct: 30 QKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYC 89
Query: 531 VSGAPEREHNHAEKVCDMALDMVDAITDLKDPSTGIT 567
VSG PE +HA +M +DM++AI+ +++ TG+
Sbjct: 90 VSGLPEARADHAHCCVEMGMDMIEAISLVREM-TGVN 125
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFD-TLTERNRVYKVETIGDAYM 529
Q ++LFSD+V FTEI SR +P+EV S+L+ +Y FD + E ++YKVETIGDAYM
Sbjct: 5 QEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYM 64
Query: 530 VVSGAPEREHNHAEKVCDMALDM 552
VV +HA+ + + AL M
Sbjct: 65 VVCNVTVPCDDHADVLLEFALRM 87
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFD-TLTERNRVYKVETIGDAYM 529
Q ++LFSD+V FTEI SR +P+EV S+L+ +Y FD + E ++YKVETIGDAYM
Sbjct: 5 QEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYM 64
Query: 530 VVSGAPEREHNHAEKVCDMALDM 552
VV +HA+ + + AL M
Sbjct: 65 VVCNVTVPCDDHADVLLEFALRM 87
>pdb|3TFG|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
pdb|3TFG|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
Length = 189
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 105 NKNLADFIKTKYGEDKWEEVRRQAGVEQPSFSTH-QVYPDCHIPRLAQAAYQVLGISEQE 163
NK + D I +GED WE ++++AG+E F + Y D L AA +VLG +E
Sbjct: 6 NKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEE 65
Query: 164 FFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFL 196
++ G ++V Y S+ GY +L+ G + +F+
Sbjct: 66 WWIAFGEYWVTYTSEEGYGELLASAGDSLPEFM 98
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 48 LDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVARHFYNK 106
LDNLH + S+P++R P+F C++ + + + LHY+S R G +G + + + F K
Sbjct: 101 LDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTK 159
>pdb|3TFF|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
pdb|3TFF|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
Length = 189
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 105 NKNLADFIKTKYGEDKWEEVRRQAGVEQPSFSTH-QVYPDCHIPRLAQAAYQVLGISEQE 163
NK + D I +GED WE ++++AG+E F + Y D L AA +VLG +E
Sbjct: 6 NKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEE 65
Query: 164 FFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFL 196
+ G ++V Y S+ GY +L+ G + +F+
Sbjct: 66 LWIAFGEYWVTYTSEEGYGELLASAGDSLPEFM 98
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 48 LDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVARHFYNK 106
LDNLH + S+P++R P+F C++ + + + LHY+S R G +G + + + F K
Sbjct: 101 LDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTK 159
>pdb|3TFD|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFD|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFE|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
pdb|3TFE|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
Length = 189
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 105 NKNLADFIKTKYGEDKWEEVRRQAGVEQPSFSTH-QVYPDCHIPRLAQAAYQVLGISEQE 163
NK + D I +GED WE ++++AG+E F + Y D L AA +VLG +E
Sbjct: 6 NKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEE 65
Query: 164 FFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFL 196
+ G ++V Y S+ GY +L+ G + +F+
Sbjct: 66 WLIAFGEYWVTYTSEEGYGELLASAGDSLPEFM 98
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 48 LDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVARHFYNK 106
LDNLH + S+P++R P+F C++ + + + LHY+S R G +G + + + F K
Sbjct: 101 LDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTK 159
>pdb|2O09|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O09|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O0C|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0C|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0G|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|2O0G|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|3L6J|A Chain A, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3L6J|B Chain B, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3TF8|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF8|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF9|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TF9|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TFA|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
pdb|3TFA|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
Length = 189
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 105 NKNLADFIKTKYGEDKWEEVRRQAGVEQPSFSTH-QVYPDCHIPRLAQAAYQVLGISEQE 163
NK + D I +GED WE ++++AG+E F + Y D L AA +VLG +E
Sbjct: 6 NKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPAEE 65
Query: 164 FFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFL 196
G ++V Y S+ GY +L+ G + +F+
Sbjct: 66 LLIAFGEYWVTYTSEEGYGELLASAGDSLPEFM 98
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 48 LDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVARHFYNK 106
LDNLH + S+P++R P+F C++ + + + LHY+S R G +G + + + F K
Sbjct: 101 LDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTK 159
>pdb|2P04|A Chain A, 2.1 Ang Structure Of The Dimerized Pas Domain Of Signal
Transduction Histidine Kinase From Nostoc Punctiforme
Pcc 73102 With Homology To The H-NoxaH-Noba Domain Of
The Soluble Guanylyl Cyclase
pdb|2P04|B Chain B, 2.1 Ang Structure Of The Dimerized Pas Domain Of Signal
Transduction Histidine Kinase From Nostoc Punctiforme
Pcc 73102 With Homology To The H-NoxaH-Noba Domain Of
The Soluble Guanylyl Cyclase
Length = 121
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 28/141 (19%)
Query: 252 HLPISASVLFEIFPFCIVFSSDMIVRSIGNSLMVILPD-LVGKKLTNWFDLVRPLIPFKF 310
HL +S +L + FPF FS + + G L I P+ LVGK + F + RP I F
Sbjct: 5 HLTLSPELLAKAFPFHFAFSRNREIVQTGEVLERISPEPLVGKLIEQHFQINRPKILIDF 64
Query: 311 QTILNRTNNIFELVTVEPVLTERQSAKRNNMMVLSDEIESDVDEKKLRLKGQMIYMDNWR 370
I + +F L + ++LKGQM+Y
Sbjct: 65 DAISKQPRALFIL---------------------------EFLHNGMQLKGQMMYQPEEE 97
Query: 371 MMMYLGTPVMPDLRALITTGL 391
++ +LG+P + D +L G+
Sbjct: 98 VIFFLGSPWITDTTSLAPLGI 118
>pdb|3HLS|A Chain A, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|B Chain B, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|C Chain C, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|D Chain D, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|E Chain E, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|F Chain F, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|G Chain G, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|H Chain H, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
Length = 66
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 399 HDFSRDLMLAGTQQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQVAD 458
H +RDL+L G Q E KL + E L + +L+ ++R L++E K+TD LLY ++P VA+
Sbjct: 3 HXATRDLVLLGEQFREEYKLTQELEXL-TDRLQLTLRALEDEKKKTDTLLYSVLPPSVAN 61
Query: 459 RLR 461
LR
Sbjct: 62 ELR 64
>pdb|2P08|A Chain A, Structure Of The N-Terminally Truncated Pas Domain Of
Signal Transduction Histidine Kinase From Nostoc
Punctiforme Pcc 73102 With Homology To The H-NoxaH-Noba
Domain Of The Soluble Guanylyl Cyclase
pdb|2P08|B Chain B, Structure Of The N-Terminally Truncated Pas Domain Of
Signal Transduction Histidine Kinase From Nostoc
Punctiforme Pcc 73102 With Homology To The H-NoxaH-Noba
Domain Of The Soluble Guanylyl Cyclase
Length = 115
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 28/138 (20%)
Query: 255 ISASVLFEIFPFCIVFSSDMIVRSIGNSLMVILPD-LVGKKLTNWFDLVRPLIPFKFQTI 313
+S +L + FPF FS + + G L I P+ LVGK + F + RP I F I
Sbjct: 2 LSPELLAKAFPFHFAFSRNREIVQTGEVLERISPEPLVGKLIEQHFQINRPKILIDFDAI 61
Query: 314 LNRTNNIFELVTVEPVLTERQSAKRNNMMVLSDEIESDVDEKKLRLKGQMIYMDNWRMMM 373
+ +F L + ++LKGQM+Y ++
Sbjct: 62 SKQPRALFIL---------------------------EFLHNGMQLKGQMMYQPEEEVIF 94
Query: 374 YLGTPVMPDLRALITTGL 391
+LG+P + D +L G+
Sbjct: 95 FLGSPWITDTTSLAPLGI 112
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYS-IFDTLTERNRVYKVETIGDAYMVVSGA 534
++IL SD+ FT + P EVV +LN + + D +T E +GD +V+ GA
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTID-EFMGDGILVLFGA 73
Query: 535 PEREHNHAEKVCDMALDMVDAITDLKDPSTGI 566
P + + A + ++M A+ ++ TG+
Sbjct: 74 PTSQQDDALRAVACGVEMQLALREVNQQVTGL 105
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 471 QMFDSVSILFSDVVTFTEICSRI----TPMEVVSMLNAMYSIFDTLTERNR---VYKVET 523
Q +D V ++F+ + F E + +E + +LN + + FD L + + V K++T
Sbjct: 11 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 70
Query: 524 IGDAYMVVSG-----------APEREHNHAEKVCDMALDMV---DAI 556
IG YM +G PER++ H + + A +V DAI
Sbjct: 71 IGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAI 117
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 471 QMFDSVSILFSDVVTFTEICSRI----TPMEVVSMLNAMYSIFDTLTERNR---VYKVET 523
Q +D V ++F+ + F E + +E + +LN + + FD L + + V K++T
Sbjct: 10 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 69
Query: 524 IGDAYMVVSG-----------APEREHNHAEKVCDMALDMV---DAI 556
IG YM +G PER++ H + + A +V DAI
Sbjct: 70 IGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAI 116
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 471 QMFDSVSILFSDVVTFTEICSRI----TPMEVVSMLNAMYSIFDTLTERNR---VYKVET 523
Q +D V ++F+ + F E + +E + +LN + + FD L + + V K++T
Sbjct: 7 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 66
Query: 524 IGDAYMVVSG-----------APEREHNHAEKVCDMALDMV---DAI 556
IG YM +G PER++ H + + A +V DAI
Sbjct: 67 IGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAI 113
>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC6|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
Length = 226
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAP 535
++ILFSD+V FT + + + V +LN N+ + +GDA M + GAP
Sbjct: 35 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAP 94
Query: 536 EREHNHAEKV 545
E E + +E+V
Sbjct: 95 E-EMSPSEQV 103
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC0|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC3|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC3|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC4|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC4|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC5|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|D Chain D, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|2BW7|A Chain A, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|B Chain B, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|C Chain C, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|D Chain D, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
Length = 219
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAP 535
++ILFSD+V FT + + + V +LN N+ + +GDA M + GAP
Sbjct: 28 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAP 87
Query: 536 EREHNHAEKV 545
E E + +E+V
Sbjct: 88 E-EMSPSEQV 96
>pdb|1FX2|A Chain A, Structural Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 235
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 474 DSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSG 533
D V+++F+D+ + T + + P + + A + + +L R + Y+V+T+GD++M+ S
Sbjct: 11 DPVTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASK 69
Query: 534 AP 535
+P
Sbjct: 70 SP 71
>pdb|1Y10|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|B Chain B, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|C Chain C, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|D Chain D, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y11|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, Active
State
Length = 407
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAP 535
V++ F+D+V FT++ ++ E+ + + + LT V+ ++TIGDA M+V P
Sbjct: 216 VTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTA-PPVWFIKTIGDAVMLVCPDP 274
>pdb|1FX4|A Chain A, Structure Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 231
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAP 535
V+++F+D+ + T + + P + + + + +L R Y+V+T+GD++M+ S +P
Sbjct: 13 VTLIFTDIESSTALWA-AHPDLMPDAVATHHRLIRSLITRYECYEVKTVGDSFMIASKSP 71
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 447 LLYQMIPKQVADR----LRTGENPIDTCQMFDSVSILFSDVVTFTEICSRITPMEVVSML 502
L+ +P+ + DR L PI+TC++ +S F + S + + +L
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 503 NAMYSIFDTLTERNRVYKV-------ETIGDAYMVVSGAP 535
N +T RN+ KV E+I D + V+ P
Sbjct: 66 NG-------ITVRNKRLKVSYARPGGESIKDTNLYVTNLP 98
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|F Chain F, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|F Chain F, Crystal Structure Of A Translation Initiation Complex
Length = 284
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 438 DEEMKRTDELLYQMIPKQVADRLRTGENPIDTCQMFDSVSILFSDVVTFTEICSRI 493
+E ++ ELL + + D RTG+ ++ Q+ DS+ + +++ +I SRI
Sbjct: 211 EETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRI 266
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 131 EQPSFSTHQVYPDCHIPRLAQAAY---QVLGISEQEFFDQMGVHFVGYVS 177
E+P ST++ + D +PR+ Y Q++ I E ++ G H + +
Sbjct: 193 EEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFA 242
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 131 EQPSFSTHQVYPDCHIPRLAQAAY---QVLGISEQEFFDQMGVHFVGYVS 177
E+P ST++ + D +PR+ Y Q++ I E ++ G H + +
Sbjct: 193 EEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFA 242
>pdb|3NRO|A Chain A, Crystal Structure Of Putative Transcriptional Factor
Lmo1026 From Listeria Monocytogenes (Fragment 52-321),
Northeast Structural Genomics Consortium Target Lmr194
pdb|3NRO|B Chain B, Crystal Structure Of Putative Transcriptional Factor
Lmo1026 From Listeria Monocytogenes (Fragment 52-321),
Northeast Structural Genomics Consortium Target Lmr194
Length = 279
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 310 FQTILNRTNNIFELVTVEPVLTERQSAKRNNMMVLSDEIESDVDEKKLRLKGQMIYMDNW 369
F++I + F+ LT+ S N VL + VD ++L+ +G+ IY +++
Sbjct: 191 FESIXKAVGDNFQ---TNXTLTDITSXAANYSSVLKN-----VDSQELKGEGEXIYSESY 242
Query: 370 RMMMYLGTPVMPDLRALIT 388
+Y P DL +IT
Sbjct: 243 GFDLYYFAPDKTDLERIIT 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,641,641
Number of Sequences: 62578
Number of extensions: 621835
Number of successful extensions: 1750
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 36
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)