RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13606
(583 letters)
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated. The HNOBA domain is
found associated with the HNOB domain and pfam00211 in
soluble cyclases and signalling proteins. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 209
Score = 249 bits (637), Expect = 1e-79
Identities = 91/215 (42%), Positives = 131/215 (60%), Gaps = 8/215 (3%)
Query: 248 REEKHLPISASVLFEIFPFCIVFSSDMIVRSIGNSLMVILPDLV--GKKLTNWFDLVRPL 305
L IS + + FPF +VF DM + G L+ +LP L+ KKLT+ F+LVRP
Sbjct: 1 SLLTKLKISTATFCKAFPFHLVFDRDMEIVQAGEGLLRVLPKLLLGKKKLTDVFELVRPK 60
Query: 306 IPFKFQTILNRTNNIFELVTVEPVLTERQSAKRNNMMVLSDEIESDVDEKKLRLKGQMIY 365
I F F+ IL+ N +F L T V+ S NN + + +I+ + K LRLKGQMIY
Sbjct: 61 ITFTFENILSHINTVFVLRTKSGVM----SVTDNNNVEDAADID-ESPLKSLRLKGQMIY 115
Query: 366 MDNWRMMMYLGTPVMPDLRALITTGLYINDLSMHDFSRDLMLAGTQQSVELKLALDQEQL 425
+ +++L +P + +L L GLY++D+ +HD +RDL+L G Q +LKL E+L
Sbjct: 116 IPESDSILFLCSPSVDNLDELTGRGLYLSDIPLHDATRDLILLGEQARAQLKLKKRLEKL 175
Query: 426 KSKKLEESMRKLDEEMKRTDELLYQMIPKQVADRL 460
K KLEE+ R+L+EE K+TD+LLY M+PK VA+RL
Sbjct: 176 K-DKLEEAHRELEEEKKKTDDLLYSMLPKSVANRL 209
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 165 bits (421), Expect = 4e-48
Identities = 61/128 (47%), Positives = 88/128 (68%), Gaps = 2/128 (1%)
Query: 439 EEMKRTDELLYQMIPKQVADRLRTGENPIDTCQMFDSVSILFSDVVTFTEICSRITPMEV 498
EE K+TD LL Q++P VA++L+ G +P+ + +D+V+ILFSD+V FT +CS TP +V
Sbjct: 1 EEKKKTDRLLDQLLPASVAEQLKRGGSPVP-AESYDNVTILFSDIVGFTSLCSTSTPEQV 59
Query: 499 VSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAPER-EHNHAEKVCDMALDMVDAIT 557
V++LN +YS FD + +R+ YKV+TIGDAYMV SG PE +HAE + D ALDMV+ +
Sbjct: 60 VNLLNDLYSRFDQIIDRHGGYKVKTIGDAYMVASGLPEEALVDHAELIADEALDMVEELK 119
Query: 558 DLKDPSTG 565
+
Sbjct: 120 TVLVQHRE 127
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 126 bits (319), Expect = 8e-34
Identities = 45/88 (51%), Positives = 65/88 (73%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMV 530
Q +D+V+ILF+D+V FT + SR +P E+V +LN +Y+ FD L +++ VYKV+TIGDAYM
Sbjct: 4 QSYDNVTILFADIVGFTALSSRHSPEELVRLLNDLYTRFDELLDKHGVYKVKTIGDAYMA 63
Query: 531 VSGAPEREHNHAEKVCDMALDMVDAITD 558
SG PE HA+ + +MALDM++AI
Sbjct: 64 ASGLPEPSPAHAQTLAEMALDMLEAIKS 91
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 112 bits (282), Expect = 1e-28
Identities = 36/90 (40%), Positives = 54/90 (60%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAP 535
V++LF+D+V FT + R+ P E+V +LN +S FD + ER+ +TIGDA M V G P
Sbjct: 2 VTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLP 61
Query: 536 EREHNHAEKVCDMALDMVDAITDLKDPSTG 565
+HAE+ AL+M +A+ +L G
Sbjct: 62 GAHEDHAERAVRAALEMQEALAELNAEREG 91
>gnl|CDD|203730 pfam07700, HNOB, Heme NO binding. The HNOB (Heme NO Binding)
domain, is a predominantly alpha-helical domain and
binds heme via a covalent linkage to histidine. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 171
Score = 100 bits (250), Expect = 2e-24
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 47 GLDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVARHFYNK 106
LDN+H + YP R PSF C E+ GL LHYRSKR G +Y +G ++ VA+HFY
Sbjct: 100 SLDNIHVEVTKLYPGARPPSFRCTEESDGGLVLHYRSKRTGLYHYVLGLLKGVAKHFYEL 159
Score = 98.5 bits (246), Expect = 5e-24
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 103 FYNKNLADFIKTKYGEDKWEEVRRQAGVEQ-PSFSTHQVYPDCHIPRLAQAAYQVLGISE 161
++L + ++ KYGED WE++ +AG E F+ H+ Y D + L AA +VLGI
Sbjct: 4 IIFESLEELVQRKYGEDVWEQILEKAGFEPEGVFTVHESYDDSELYDLVAAASKVLGIPA 63
Query: 162 QEFFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFLNG 198
+E ++ G F + S+ GYD +L VLGR++RDFL
Sbjct: 64 EEIWEAFGRFFFTFFSESGYDELLRVLGRNLRDFLQS 100
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 77.4 bits (191), Expect = 5e-17
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAP 535
V+ILF+D+V FT + + P E +LN + FD+L R+ K++TIGD +MVVSG
Sbjct: 2 VTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL- 60
Query: 536 EREHNHAEKVCDMALDMVDAITDLKDPS 563
+H A DM +A++ L
Sbjct: 61 ----DHPAAAVAFAEDMREAVSALNQSE 84
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 69.9 bits (171), Expect = 1e-13
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Query: 439 EEMKRTDELLYQMIPKQVADRLRTGENPIDTCQMFDSVSILFSDVVTFTEICSRITPMEV 498
R+D +L + + V L G V++LF+D+V TE+ + +
Sbjct: 16 AAGLRSDLVLRLYLARVVGRLLARGG------AGDRRVTLLFADIVGSTELSESLGDEAL 69
Query: 499 VSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAPEREHNHAEKVCDMALDMVDAITD 558
V +LN + + R+ V+ IGD ++ V G P + D+ L + + +
Sbjct: 70 VELLNLYFDAVAEVVARHGGRVVKFIGDGFLAVFGRPSPLEDAVACALDLQLALRNPLAR 129
Query: 559 LKDPSTGITRRG 570
L+ S + R G
Sbjct: 130 LRRESLRV-RIG 140
>gnl|CDD|236268 PRK08452, PRK08452, flagellar protein FlaG; Provisional.
Length = 124
Score = 31.5 bits (72), Expect = 0.42
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 410 TQQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTD 445
QS + + EQLK KKLEE KL+EEMKR D
Sbjct: 36 IDQSKKTIDGGNNEQLK-KKLEELTEKLNEEMKRLD 70
>gnl|CDD|222629 pfam14257, DUF4349, Domain of unknown function (DUF4349). This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 282 and
353 amino acids in length. There is a single completely
conserved residue D that may be functionally important.
Length = 262
Score = 29.9 bits (68), Expect = 3.1
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 19/59 (32%)
Query: 310 FQTILNRTNNIFELVTVEPVLTERQSAKRNNMMVLSDEIESDVDEKKLRLKGQMIYMDN 368
+L R + +L+ VE L+ Q+ EIES L+ Q+ Y+D+
Sbjct: 151 LLALLERAGTVEDLLEVERELSRVQA-----------EIES--------LEAQLRYLDD 190
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 30.3 bits (68), Expect = 4.2
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 417 KLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQVADRLRTGENPIDTCQMFDSV 476
K+ L Q++LK LEE ++ D E+ + LYQ K+ D L + +
Sbjct: 352 KVELLQQKLKL--LEERLQASDHEIHSYIQ-LYQESIKEFQDTLSKLKEESKKRSLEHPA 408
Query: 477 SILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVET-IGDAYMVVSGAP 535
+ S E SRI + +L S D R V+K + I +AY+ G
Sbjct: 409 DDMPS------EFWSRILLLIDGWLLEKKISNNDAKLLREMVWKRDGRIREAYLSCKGKN 462
Query: 536 ERE 538
ERE
Sbjct: 463 ERE 465
>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational
modification, protein turnover, chaperones].
Length = 119
Score = 28.0 bits (63), Expect = 6.2
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 415 ELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQ 455
EL+ + +L+ K LE+ KL E ++ + + +
Sbjct: 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDA 114
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 29.3 bits (66), Expect = 6.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 181 YDRVLSVLGRHMRDFLNGKYLQKVSGSILREMRIELVR--------EELLLETVHVTF 230
YD VL L +R + G +++V+G ++R M LV+ ++L+ E H F
Sbjct: 288 YDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPF 345
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 29.0 bits (65), Expect = 8.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 422 QEQLKSKKLEESMRKLDEEMKRTDELLYQM 451
Q + ++++E KL EE K+ D+L ++
Sbjct: 364 QLETYKRQVQELHAKLSEESKKADKLEFEY 393
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.393
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,207,085
Number of extensions: 3033925
Number of successful extensions: 2934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2927
Number of HSP's successfully gapped: 25
Length of query: 583
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 481
Effective length of database: 6,413,494
Effective search space: 3084890614
Effective search space used: 3084890614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)