RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13606
(583 letters)
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 166 bits (422), Expect = 5e-48
Identities = 41/92 (44%), Positives = 61/92 (66%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMV 530
+ F +V++LFSD+V FT ICS+ +P++V++MLNA+Y+ FD VYKVETIGDAY V
Sbjct: 10 KKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCV 69
Query: 531 VSGAPEREHNHAEKVCDMALDMVDAITDLKDP 562
G + HA ++ MAL M++ ++ P
Sbjct: 70 AGGLHKESDTHAVQIALMALKMMELSDEVMSP 101
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 162 bits (413), Expect = 5e-47
Identities = 39/93 (41%), Positives = 57/93 (61%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMV 530
+D S+LF+D+V FTE S P ++V L+ +YS FD L +++ + K+E GD+YMV
Sbjct: 6 DKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMV 65
Query: 531 VSGAPEREHNHAEKVCDMALDMVDAITDLKDPS 563
VSG P +H + + D ALDM + LKDP
Sbjct: 66 VSGVPRPRPDHTQALADFALDMTNVAAQLKDPR 98
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 158 bits (403), Expect = 2e-45
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 437 LDEEMKRTDELLYQMIPKQVADRLRTGENPIDTCQMFDSVSILFSDVVTFTEICSRITPM 496
+ E+ + KQ Q D+VSILF+D+ FT + S+ T
Sbjct: 1 MHHHHHHAMEMKADINAKQEDMMFHKIY-----IQKHDNVSILFADIEGFTSLASQCTAQ 55
Query: 497 EVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAPEREHNHAEKVCDMALDMVDAI 556
E+V LN +++ FD L N +++ +GD Y VSG PE +HA +M +DM++AI
Sbjct: 56 ELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGMDMIEAI 115
Query: 557 TDLKDP 562
+ +++
Sbjct: 116 SLVREM 121
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 153 bits (389), Expect = 7e-44
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNR-VYKVETIGDAYM 529
Q ++LFSD+V FTEI SR +P+EV S+L+ +Y FD E +YKVETIGDAYM
Sbjct: 5 QEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYM 64
Query: 530 VVSGAPEREHNHAEKVCDMALDMVDAITDLKDP 562
VV +HA+ + + AL M + + +
Sbjct: 65 VVCNVTVPCDDHADVLLEFALRMHEEASRVASS 97
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 152 bits (387), Expect = 4e-43
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 7/106 (6%)
Query: 471 QMFDSVSILFSDVVTFTEICSRITP----MEVVSMLNAMYSIFDTLTERNR---VYKVET 523
+ +D+V+ILFS +V F CS+ M++V++LN +Y+ FDTLT+ + VYKVET
Sbjct: 8 KRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVET 67
Query: 524 IGDAYMVVSGAPEREHNHAEKVCDMALDMVDAITDLKDPSTGITRR 569
+GD YM VSG PE +HA +C +ALDM++ ++ +
Sbjct: 68 VGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDGESVQIT 113
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 131 bits (332), Expect = 2e-35
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 471 QMFDSVSILFSDVVTFTEICSRI----TPMEVVSMLNAMYSIFDTLTERNR---VYKVET 523
Q +D V ++F+ + F E + +E + +LN + + FD L + + V K++T
Sbjct: 10 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 69
Query: 524 IGDAYMVVSG-----------APEREHNHAEKVCDMALDMVDAITDLKDPS 563
IG YM +G PER++ H + + A +V + + S
Sbjct: 70 IGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHS 120
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous
to domain in soluble guanylyl CY transferase; 2.00A
{Nostoc punctiforme} PDB: 2p04_A
Length = 115
Score = 116 bits (292), Expect = 3e-31
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 28/140 (20%)
Query: 255 ISASVLFEIFPFCIVFSSDMIVRSIGNSLMVILPD-LVGKKLTNWFDLVRPLIPFKFQTI 313
+S +L + FPF FS + + G L I P+ LVGK + F + RP I F I
Sbjct: 2 LSPELLAKAFPFHFAFSRNREIVQTGEVLERISPEPLVGKLIEQHFQINRPKILIDFDAI 61
Query: 314 LNRTNNIFELVTVEPVLTERQSAKRNNMMVLSDEIESDVDEKKLRLKGQMIYMDNWRMMM 373
+ +F L + ++LKGQM+Y ++
Sbjct: 62 SKQPRALFILEFLH---------------------------NGMQLKGQMMYQPEEEVIF 94
Query: 374 YLGTPVMPDLRALITTGLYI 393
+LG+P + D +L G+ +
Sbjct: 95 FLGSPWITDTTSLAPLGIKL 114
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 116 bits (292), Expect = 2e-28
Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 25/193 (12%)
Query: 383 LRALITTGLYINDLSMHDFSRDL-----MLAGTQQSVELKLALDQEQLKSKKLEESMRKL 437
+ + GL N + R L A + L+ + + + S +
Sbjct: 114 AQRFVELGL--NPDQVVLVVRVLAEGLSHAAEAMRYTALEAIMRPGATELDIAKGSQALV 171
Query: 438 DEEMKRTDEL--------LYQMIPKQVADRLRTGENPIDTCQMFDSVSILFSDVVTFTEI 489
+ + + L M+ + + V++ F+D+V FT++
Sbjct: 172 SQIVPLLGPMIQDMLFMQLRHMMETEAVNAGERAAGKPLPG--ARQVTVAFADLVGFTQL 229
Query: 490 CSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAPEREHNHAEKVCDMA 549
++ E+ + + + LT V+ ++TIGDA M+V P + D
Sbjct: 230 GEVVSAEELGHLAGRLAGLARDLTAPP-VWFIKTIGDAVMLVCPDPAP-------LLDTV 281
Query: 550 LDMVDAITDLKDP 562
L +V+ + +
Sbjct: 282 LKLVEVVDTDNNF 294
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Length = 66
Score = 91.7 bits (228), Expect = 4e-23
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 397 SMHDFSRDLMLAGTQQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQV 456
H +RDL+L G Q E KL + E L + L+ ++R L++E K+TD LLY ++P V
Sbjct: 1 GSHMATRDLVLLGEQFREEYKLTQELEMLTDR-LQLTLRALEDEKKKTDTLLYSVLPPSV 59
Query: 457 ADRLR 461
A+ LR
Sbjct: 60 ANELR 64
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 91.4 bits (227), Expect = 5e-21
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 473 FDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVS 532
D V+++F+D+ + T + + P + + A + + +L R + Y+V+T+GD++M+ S
Sbjct: 10 TDPVTLIFTDIESSTALWAA-HPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIAS 68
Query: 533 GAPEREHNHAEKVCDMALDMVDAITDLKDP 562
+P A+++ L L D
Sbjct: 69 KSPFAAVQLAQELQLCFLHHDWGTNALDDS 98
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling
protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A*
3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A*
3tf9_A* 3tfa_A*
Length = 189
Score = 84.6 bits (209), Expect = 3e-19
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 103 FYNKNLADFIKTKYGEDKWEEVRRQAGVEQPS-FSTHQVYPDCHIPRLAQAAYQVLGISE 161
NK + D I +GED WE ++++AG+E F + Y D L AA +VLG
Sbjct: 4 LVNKAIQDMISKHHGEDTWEAIKQKAGLEDIDFFVGMEAYSDDVTYHLVGAASEVLGKPA 63
Query: 162 QEFFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFLNG 198
+E++ G ++V Y S+ GY +L+ G + +F+
Sbjct: 64 EEWWIAFGEYWVTYTSEEGYGELLASAGDSLPEFMEN 100
Score = 78.5 bits (193), Expect = 5e-17
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 47 GLDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVARHFYNK 106
LDNLH + S+P++R P+F C++ + + + LHY+S R G +G + + + F K
Sbjct: 100 NLDNLHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTRCGLAPMVLGLLHGLGKRFQTK 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 88.0 bits (217), Expect = 3e-18
Identities = 91/535 (17%), Positives = 173/535 (32%), Gaps = 144/535 (26%)
Query: 91 YAMGQI----REVARHFYNKNLADFIKTKYGEDKWEEVRRQAGVEQPSFSTHQVYPDCHI 146
+ G+ +++ F + + +F K +D + + S ++ D HI
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNF-DCKDVQD----------MPKSILSKEEI--D-HI 54
Query: 147 ---PRLAQAAYQVLGI--SEQEFFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFLNGKYL 201
++ S+QE +M FV V + Y ++S
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQE---EMVQKFVEEVLRINYKFLMS--------------- 96
Query: 202 QKVSGSILREMRIELVREELLLETVHVTFQLTFDNRAFTLASLTMTREEKHLPISASVLF 261
I E R + + +E + DN+ F ++R + +L + L
Sbjct: 97 -----PIKTEQRQPSMMTRMYIEQRDRLYN---DNQVFA--KYNVSRLQPYLKLR-QALL 145
Query: 262 EIFPFCIVFSSDMIVRSIGNS---LMVILPDLVGKKLTN---WFDLVRPLIPFKFQTILN 315
E+ P V ++ G + L V L V K+ W +L P +T+L
Sbjct: 146 ELRPAKNVLIDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLE 200
Query: 316 RTNNIFELVTVEPVLTERQSAKRNNMMVLSDEIESDVDEKKLRLKGQMIY------MDN- 368
+ L ++P T R N + I + + RL Y + N
Sbjct: 201 MLQKL--LYQIDPNWTSRSDHSSN----IKLRIH-SIQAELRRLLKSKPYENCLLVLLNV 253
Query: 369 -----WRMMMYLGTPVMPDL--RALITTGLYINDLSMHDFSRDLMLAGTQQ--SVELKLA 419
W +L + L+TT + DF L A T +
Sbjct: 254 QNAKAWNAF---------NLSCKILLTT----RFKQVTDF---LSAATTTHISLDHHSMT 297
Query: 420 LDQEQLK---SKKLEESMRKLDEEMKRTDELLYQMIPKQVADRLRTGEN----------- 465
L +++K K L+ + L E+ T+ +I + + D L T +N
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 466 ----------PIDTCQMFDSVSILFSDV-VTFTEIC---SRITPMEVVSMLNAMYSIFDT 511
P + +MFD +S+ + + + +V+ ++N ++ +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YS 415
Query: 512 LTERNRVYKVETIGDAYMVVSGAPERE---H-------NHAEKVC--DMALDMVD 554
L E+ +I Y+ + E E H N + D+ +D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein,
signaling protein; HET: HEM; 1.67A {Caldanaerobacter
subterraneus} PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A*
3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A*
3lah_A* 3lai_A*
Length = 188
Score = 80.3 bits (198), Expect = 1e-17
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 103 FYNKNLADFIKTKYGEDKWEEVRRQAGVE-QPSFSTHQVYPDCHIPRLAQAAYQVLGISE 161
+ ++ YG D +E + G E + + D + R+ + G +
Sbjct: 4 TFVGTWIKTLRDLYGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEKTGKNV 63
Query: 162 QEFFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFLNG 198
E + ++G + S++ + + GR + +FL
Sbjct: 64 NEIWREVGRQNIKTFSEW-FPSYFA--GRRLVNFLMM 97
Score = 74.1 bits (182), Expect = 2e-15
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 47 GLDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVARHF 103
+D +H L P I + + + + Y SK R Y +G I ++ F
Sbjct: 97 MMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEMEYVSK-RKMYDYFLGLIEGSSKFF 152
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET:
HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Length = 181
Score = 75.4 bits (185), Expect = 5e-16
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Query: 103 FYNKNLADFIKTKYGEDKWEEVRRQAGVEQPSFSTHQVYPDCHIPRLAQAAYQVLGISEQ 162
L D + + G W E+ + + + + + Y + + + Q Q L + Q
Sbjct: 4 IIFNVLEDMVVAQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQ 63
Query: 163 EFFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFLNG 198
+ G ++ D + + G
Sbjct: 64 DVVKAFGQFLFNGLASRHTD--VVDKFDDFTSLVMG 97
Score = 68.9 bits (168), Expect = 9e-14
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 48 LDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVARHF 103
D +H + Y P + + L Y S R + A G + A+HF
Sbjct: 99 HDVIHLEVNKLYHEPSLPHINGQLLPNNQIALRYSSP-RRLCFCAEGLLFGAAQHF 153
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 72.6 bits (179), Expect = 9e-15
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTE---RNRVYKVETIGDAYMVVS 532
++IL SD+ FT + P EVV +LN Y F + + + E +GD +V+
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVLNI-Y--FGKMADVITHHGGTIDEFMGDGILVLF 71
Query: 533 GAPEREHNHAEKVCDMALDMVDAITDL 559
GAP + + A + ++M A+ ++
Sbjct: 72 GAPTSQQDDALRAVACGVEMQLALREV 98
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 69.9 bits (172), Expect = 7e-14
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTE---RNR--VYKVETIGDAYMV 530
++ILFSD+V FT + + + V +LN Y +T N+ V K +GDA M
Sbjct: 28 ITILFSDIVGFTRMSNALQSQGVAELLNE-Y--LGEMTRAVFENQGTVDKF--VGDAIMA 82
Query: 531 VSGAPER--EHNHAEKVCDMALDMVDAITDL 559
+ GAPE + A M+ A+ L
Sbjct: 83 LYGAPEEMSPSEQVRRAIATARQMLVALEKL 113
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 68.3 bits (168), Expect = 2e-13
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTE---RNR--VYKVETIGDAYMV 530
+++ FSD+ FTE+ + + +LN Y + +++ + + K +GD MV
Sbjct: 10 LTVFFSDIRGFTELSEELEAEALTDLLNN-Y--LNEMSKIALKYGGTIDKF--VGDCVMV 64
Query: 531 VSGAPE--REHNHAEKVCDMALDMVDAITDL 559
G P A M + M + L
Sbjct: 65 FFGDPSTQGAKKDAVAAVSMGIAMRKHMKVL 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 8e-12
Identities = 90/536 (16%), Positives = 164/536 (30%), Gaps = 195/536 (36%)
Query: 73 TRQGLTLHYRSKRRGF-----VYYAMGQIREVARHFYNKNLADFIKTKYGEDKWEEVRRQ 127
TR LTL + S ++ Q++E F K E
Sbjct: 6 TRP-LTLSHGSLEHVLLVPTASFFIASQLQE-----------QFNKILP-----EPTEGF 48
Query: 128 AGVEQPSFSTHQVYPDCHIPRLAQAAYQVLGISEQEFFDQMGVHFVGYVSQY-------G 180
A ++P+ + E F+GYVS
Sbjct: 49 AADDEPT-------------------------TPAELV----GKFLGYVSSLVEPSKVGQ 79
Query: 181 YDRVLSVLGRHM-RDFLNGKYLQKVSGSILREMRIELVREELLLETVHVTFQLTFDNRAF 239
+D+VL++ +L G + ++ +L+E LV+ + L+ + +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI-------------KNY 126
Query: 240 TLASLTMTREEKHLPISASVLFE-----IFPFCIVFSSDMIVRSIGNSLMVILPDLVGKK 294
A + R SA LF +F GN+
Sbjct: 127 ITARIMAKRPFDKKSNSA--LFRAVGEGNAQLVAIFGGQ------GNT------------ 166
Query: 295 LTNWFDLVRPLIPFKFQTILNRTNNIFELVTVEPVLTE--RQSAKRNNMMVLSDEIESDV 352
++F+ +R ++++ T ++ + + SA+ LS+ I + +
Sbjct: 167 -DDYFEELR---------------DLYQ--TYHVLVGDLIKFSAET-----LSELIRTTL 203
Query: 353 DEKKLRLKGQMIYMD--NWRMMMYLGTPVM-PDLRALITT-------GL-----YINDLS 397
D +K+ +G ++ W L P PD L++ G+ Y+
Sbjct: 204 DAEKVFTQG----LNILEW-----LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 398 MHDFS----RDLMLAGTQQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLY---- 449
+ F+ R + T S L A+ + S ES +++ +L+
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS---WES---FFVSVRKAITVLFFIGV 308
Query: 450 --Q-------MIPKQVADRLRTGEN-PIDTCQMFDSVSILFSDVVTFTEICSRITPMEVV 499
+ P + D L E P M S+S L + V + V
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVP---SPML-SISNLTQEQVQ-----------DYV 353
Query: 500 SMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAPE---REHNHAEKV-CDMALD 551
+ N+ L +V G +VVSG P+ + K LD
Sbjct: 354 NKTNS------HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Score = 54.7 bits (131), Expect = 8e-08
Identities = 65/392 (16%), Positives = 126/392 (32%), Gaps = 155/392 (39%)
Query: 17 LRIKFHTSAG-----IEPTPSCL------PVERLDHYTTEAGLDNL-----------HEY 54
LR + T I+ + L ++ +T GL+ L +Y
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDY 230
Query: 55 LK---FSYPRMRAPSFICENETRQGLT--LHYR--SKRRGFVYYAMGQIREVAR----HF 103
L S P I G+ HY +K G + G++R + H
Sbjct: 231 LLSIPISCP------LI-------GVIQLAHYVVTAKLLG---FTPGELRSYLKGATGH- 273
Query: 104 YNKNL--ADFIKTKYGEDKWEEVRRQA----------GVEQPSFSTHQVYPDCHI-PRLA 150
++ L A I D WE GV ++ YP+ + P +
Sbjct: 274 -SQGLVTAVAIAE---TDSWESFFVSVRKAITVLFFIGVR-----CYEAYPNTSLPPSIL 324
Query: 151 QAAYQ-----------VLGISEQEFFDQMGVHFVGYVSQYG-YDRVLSV-L--GRHMRDF 195
+ + + + +++++ D +V + + + + + L G ++
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQD-----YVNKTNSHLPAGKQVEISLVNGA--KNL 377
Query: 196 LNGKYLQKVSGSI--LREMRIEL--VREELLLETVHVTF---QLTFDNRAFTLASLTMTR 248
+ VSG L + + L + L+ + F +L F NR F
Sbjct: 378 V-------VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR-F--------- 420
Query: 249 EEKHLPISASVLFEIFPFCIVFSSDMIVRSIGNSLMVILPDLVGKKLTNWF--DLVRPLI 306
LP+++ PF S + + +I DLV ++ + D+ P+
Sbjct: 421 ----LPVAS-------PF---HSHLL-----VPASDLINKDLVKNNVS-FNAKDIQIPV- 459
Query: 307 PFKFQTI----L-----NRTNNIFELVTVEPV 329
+ T L + + I + + PV
Sbjct: 460 ---YDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 48.9 bits (116), Expect = 5e-06
Identities = 53/338 (15%), Positives = 95/338 (28%), Gaps = 136/338 (40%)
Query: 75 QGLTLHYRSKRRGFVYYAMGQIREVARHFYNKNLADFIKTKYGEDKWEEVRRQAGVEQPS 134
QG S+ +G MG Y + + D W
Sbjct: 1624 QG------SQEQG-----MG------MDLYKT--SKAAQ-----DVWNRA---------- 1649
Query: 135 FSTHQVYPDCHIPRLAQAAYQVLGISEQEFFDQ----MGVHFVGYVSQYGYDRVLSVLGR 190
D H G S + + +HF G + + +++
Sbjct: 1650 --------DNHF-------KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 191 HMRDFLNGKYLQKVSGSILREMRIELVR------EELLLETVHVTFQLTFDNRAFTLASL 244
+ D GK + I +E+ + LL T T Q A TL
Sbjct: 1695 TIVD---GKLKTE---KIFKEINEHSTSYTFRSEKGLLSAT-QFT-Q-----PALTLMEK 1741
Query: 245 TMT---REEKHLPISASV----LFE---------IFPF----CIVF----------SSDM 274
+ + +P A+ L E + +VF D
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 275 IVRSIGNSLMV-ILPDLVGKKLTNWFDLVRPLIPFKFQTILNRTNNIFELVTVEPVLTER 333
+ RS N M+ I P V + + ++ ++ + + RT + VE V
Sbjct: 1802 LGRS--NYGMIAINPGRVAASFSQ--EALQYVV----ERVGKRTGWL-----VEIV---- 1844
Query: 334 QSAKRN-NM----MVLSDEIESDVDE-----KKLRLKG 361
N N+ V + ++ +D ++L+
Sbjct: 1845 -----NYNVENQQYVAAGDLR-ALDTVTNVLNFIKLQK 1876
Score = 37.3 bits (86), Expect = 0.015
Identities = 46/276 (16%), Positives = 85/276 (30%), Gaps = 78/276 (28%)
Query: 1 SEERFSSRYLAVLKKVLRIKFHTSAGIEPTPSCLPVERLDHYTTEAGLDNLHEYLKFSYP 60
S E F ++K + + F G+ P L E L+N
Sbjct: 288 SWESF----FVSVRKAITVLFFI--GVRCY-EAYPNTSLPPSILEDSLENNEG------- 333
Query: 61 RMRAPS--FICENETRQGLTLHYRSKRRGF-----VYYAM--GQIREVARHFYNKNLADF 111
PS N T++ + + V ++ G A++ ++
Sbjct: 334 ---VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-----AKNL---VVSGP 382
Query: 112 IKTKYGEDKW-EEVRRQAGVEQ---------PSFSTHQVY-----PDCHIPRLAQAAYQV 156
++ YG + + + +G++Q FS + P H L A+ +
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN--RFLPVASP-FHSHLLVPASDLI 439
Query: 157 LGISEQEFFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFLNGKYLQKVSGSILREMRIEL 216
D + + + + D +G L+ +SGSI + +
Sbjct: 440 NK-------DLVKNNVSFNAKD---------IQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 217 VREELLLETV------HVTFQLTFD-NRAFTLASLT 245
+R + ET H+ L F A L LT
Sbjct: 484 IRLPVKWETTTQFKATHI---LDFGPGGASGLGVLT 516
Score = 29.6 bits (66), Expect = 3.5
Identities = 27/162 (16%), Positives = 46/162 (28%), Gaps = 63/162 (38%)
Query: 448 LYQMIP--KQV---ADRLRT---G--------ENPIDTCQMFDSVSILFSDVVTFTEICS 491
LY+ + V AD G NP+ +++I F I
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV-------NLTIHFGGE-KGKRIRE 1686
Query: 492 RITPMEVVSMLNA---MYSIFDTLTERNRVYKVETIGD------------AYMVVSGAPE 536
+ M ++++ IF + E + Y + A ++ A
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR--SEKGLLSATQFTQPALTLMEKA-- 1742
Query: 537 REHNHAEKVCDMALDMVDAITDLKDPSTGITRRGSKLLGHSI 578
A DLK S G+ + GHS+
Sbjct: 1743 ------------------AFEDLK--SKGLIPADATFAGHSL 1764
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 61.1 bits (149), Expect = 4e-11
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAP 535
+I+F+D+V T+ + + +L+ +I +R +V T GD ++ +P
Sbjct: 18 ATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSP 77
Query: 536 EREHNHAEKVCDMALDMVDAITDL 559
A D+VDA+ L
Sbjct: 78 SA-------AIACADDIVDAVAAL 94
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 53.4 bits (129), Expect = 2e-08
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAP 535
+IL +D+ ++ + R + + D + V+T GD +
Sbjct: 8 CAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDTA 67
Query: 536 EREHNHAEKVCDMALDMVDAITDL 559
+ AL++ A+
Sbjct: 68 QA-------ALRCALEIQQAMQQR 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.29
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 27/56 (48%)
Query: 332 ERQSAKRNNMMVLSDEIESDVDEKKLRLKGQMIYMDNWRMMMYLGTPVMPDLRALI 387
E+Q+ K+ +++ LK +Y D+ P + ++A +
Sbjct: 18 EKQALKK---------LQA-------SLK---LYADD-------SAPALA-IKATM 46
Score = 30.7 bits (68), Expect = 0.67
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 10/33 (30%)
Query: 421 DQEQLKSKKLEESMRKL---DE----EMKRTDE 446
+++ LK KL+ S+ KL D +K T E
Sbjct: 18 EKQALK--KLQASL-KLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 1.8
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 7/23 (30%)
Query: 431 EESMRKLDEEMKRTDELLYQMIP 453
+++++KL +K LY
Sbjct: 19 KQALKKLQASLK-----LYA--D 34
Score = 28.8 bits (63), Expect = 2.9
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 11/39 (28%)
Query: 119 DKWEEVRRQAGVEQPSFSTHQVY-PDCHIPRLA-QAAYQ 155
+K + +++ ++ ++ ++Y D P LA +A +
Sbjct: 18 EK-QALKK---LQ----ASLKLYADDS-APALAIKATME 47
>1jr7_A GABT protein, hypothetical 37.4 kDa protein in ILEY-GABD interg
region; gamma amino-butyric acid metabolism, GABA; 2.00A
{Escherichia coli} SCOP: b.82.2.3 PDB: 2r6s_A*
Length = 311
Score = 30.6 bits (68), Expect = 1.4
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 344 LSDEIESDVDEKKLRLK-GQMIYMDNWRMM 372
LSD IE+ + + G+ + ++N +
Sbjct: 248 LSDAIETSKGILSVPVPVGKFLLINNLFWL 277
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 3.2
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 422 QEQLKSKKLEESMRKLDEEM--KRTDELL 448
EQ++ K + + R D+ + +++
Sbjct: 128 SEQVE--KNKINNRIADKAFYQQPDADII 154
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.4 bits (66), Expect = 3.8
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 411 QQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQM 451
QQ ++L+ L++E+ +KL+ D ++K+ ++ + M
Sbjct: 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Score = 28.3 bits (63), Expect = 8.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 411 QQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQM 451
EL++ L +E+ ++LE+ RKL+ E E + ++
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase,
2-OXOG dioxygenase 1, oxidoreductase, structural
genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB:
3ms5_A* 3n6w_A
Length = 388
Score = 29.4 bits (65), Expect = 3.9
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 341 MMVLSDEIESDVDEKKLRLK-GQMIYMDNWRMM 372
+ D + S + ++ G +I DNWR++
Sbjct: 315 LKEFVDLMNSKESKFTFKMNPGDVITFDNWRLL 347
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin,
oxygen transport; HET: HEM; 2.15A {Bacillus subtilis}
SCOP: a.1.1.1
Length = 132
Score = 28.0 bits (62), Expect = 4.1
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 89 VYYAMGQ--IREVARHFYNKNLAD-FIKTKYGEDKWEEVRRQAGVEQPSFSTHQVYPDCH 145
Y A+G+ + ++ FY + + +K + D E R+Q +Y + H
Sbjct: 8 PYEAIGEELLSQLVDTFYERVASHPLLKPIFPSDLTETARKQKQFLTQYLGGPPLYTEEH 67
Query: 146 IPRLAQAAYQVLGISEQEFFDQMGVHFVGYVSQYGYD 182
+ +A + I+ + D + G +
Sbjct: 68 GHPMLRARHLPFPITNER-ADAWLSCMKDAMDHVGLE 103
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.9 bits (65), Expect = 5.1
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 411 QQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMI 452
+ ++L+ +D++ + K L E M L+ E L +
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 27.3 bits (61), Expect = 6.6
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 85 RRGFVYYAMGQIREVARHFYNKNLA 109
R G Y+ + ++ A HFYNK+LA
Sbjct: 84 RIGNSYFKEEKYKD-AIHFYNKSLA 107
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell
membrane, cell shape, cell WALL biogenesis/degradation,
membrane; 2.05A {Mycobacterium tuberculosis}
Length = 483
Score = 28.4 bits (64), Expect = 7.5
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 13/48 (27%)
Query: 165 FDQMGVHFVGYVSQ-YG-------YDRVL-----SVLGRHMRDFLNGK 199
++ G+ S Y D +L + GR + DF G+
Sbjct: 72 NPEVYAPVTGFYSLRYSSTALERAEDPILNGSDRRLFGRRLADFFTGR 119
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown
function; HET: HEB; NMR {Synechococcus SP}
Length = 123
Score = 27.1 bits (60), Expect = 8.8
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 89 VYYAMG---QIREVARHFYNKNLAD-FIKTKYGEDKWEEVR-RQAGVEQPSFSTHQVYPD 143
+Y +G + FY K LAD + + + + Q +F +P
Sbjct: 3 LYEKLGGAAAVDLAVEKFYGKVLADERVNRFFVNTDMAKQKQHQKDFMTYAFGGTDRFPG 62
Query: 144 CHIPRLAQAAYQVLGISEQEFFDQMGVHFVGYVSQYGYD 182
+ Q + G+++ FD + + V + +
Sbjct: 63 RSMRAAHQDLVENAGLTDVH-FDAIAENLVLTLQELNVS 100
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 26.8 bits (59), Expect = 9.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 404 DLMLAGTQQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELL 448
M + ++ LK AL++ + + K+LEE M L +E +
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV 57
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba
oxygen binding, hexacoordinate, truncated, oxygen
storage-T complex; HET: FLC HEM; 1.68A {Synechocystis
SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A*
2hz3_A* 2hz2_A*
Length = 124
Score = 26.8 bits (59), Expect = 9.8
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 13/121 (10%)
Query: 89 VYYAMG---QIREVARHFYNKNLAD-FIKTKYGEDKWEEVR-RQAGVEQPSFSTHQVYPD 143
+Y +G + FY + L D IK + + + R Q +F Y
Sbjct: 4 LYEKLGGTTAVDLAVDKFYERVLQDDRIKHFFADVDMAKQRAHQKAFLTYAFGGTDKYDG 63
Query: 144 CHIPRLAQAAYQVLGISEQEFFDQMGVHFVGYVSQYGYD-----RVLSVLG--RHMRDFL 196
++ + + G++ + FD + + + + G V +V G H RD L
Sbjct: 64 RYMREAHKELVENHGLNGEH-FDAVAEDLLATLKEMGVPEDLIAEVAAVAGAPAHKRDVL 122
Query: 197 N 197
N
Sbjct: 123 N 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.393
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,041,463
Number of extensions: 566770
Number of successful extensions: 1208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1180
Number of HSP's successfully gapped: 61
Length of query: 583
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 484
Effective length of database: 3,937,614
Effective search space: 1905805176
Effective search space used: 1905805176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)