RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13606
         (583 letters)



>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein
           {Thermoanaerobacter tengcongensis [TaxId: 119072]}
          Length = 188

 Score = 84.1 bits (208), Expect = 2e-19
 Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 49/183 (26%)

Query: 103 FYNKNLADFIKTKYGEDKWEEVRRQAGVE-QPSFSTHQVYPDCHIPRLAQAAYQVLGISE 161
                    ++  YG D  +E  +  G E     +  +   D  + R+     +  G + 
Sbjct: 4   TIVGTWIKTLRDLYGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEKTGKNV 63

Query: 162 QEFFDQMGVHFVGYVSQYGYDRVLSVLGRHMRDFLNGK-------------------YLQ 202
            E + ++G   +   S+  +    +  GR + +FL                        +
Sbjct: 64  NEIWREVGRQNIKTFSE-WFPSYFA--GRRLVNFLMMMDEVHLQLTKMIKGATPPRLIAK 120

Query: 203 KVSGSILR--------------------------EMRIELVREELLLETVHVTFQLTFDN 236
            V+   +                           E+ +E V          +  ++ F N
Sbjct: 121 PVAKDAIEMEYVSKRKMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKN 180

Query: 237 RAF 239
             F
Sbjct: 181 PVF 183



 Score = 74.1 bits (182), Expect = 6e-16
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 42  YTTEAGLDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVAR 101
                 +D +H  L         P  I +   +  + + Y SK R    Y +G I   ++
Sbjct: 92  VNFLMMMDEVHLQLTKMIKGATPPRLIAKPVAKDAIEMEYVSK-RKMYDYFLGLIEGSSK 150

Query: 102 HF 103
            F
Sbjct: 151 FF 152


>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
           {Trypanosome (Trypanosoma brucei), different isoform
           [TaxId: 5691]}
          Length = 235

 Score = 76.5 bits (187), Expect = 2e-16
 Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 473 FDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVS 532
            D V+++F+D+ + T + +   P  +   + A + +  +L  R + Y+V+T+GD++M+ S
Sbjct: 10  TDPVTLIFTDIESSTALWAA-HPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIAS 68

Query: 533 GAPEREHNHAEKVCDMALDM 552
            +P      A+++    L  
Sbjct: 69  KSPFAAVQLAQELQLCFLHH 88


>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 73.4 bits (179), Expect = 1e-15
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 18/104 (17%)

Query: 471 QMFDSVSILFSDVVTFTEICSRI----TPMEVVSMLNAMYSIFDTLTER---NRVYKVET 523
           Q +D V ++F+ +  F E  +        +E + +LN + + FD L  +   + V K++T
Sbjct: 2   QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 61

Query: 524 IGDAYMVVSG-----------APEREHNHAEKVCDMALDMVDAI 556
           IG  YM  +G            PER++ H   + + A  +V  +
Sbjct: 62  IGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKL 105


>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 190

 Score = 65.0 bits (157), Expect = 8e-13
 Identities = 35/86 (40%), Positives = 53/86 (61%)

Query: 471 QMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMV 530
           Q  D+VSILF+D+  FT + S+ T  E+V  LN +++ FD L   N   +++ +GD Y  
Sbjct: 10  QKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYC 69

Query: 531 VSGAPEREHNHAEKVCDMALDMVDAI 556
           VSG PE   +HA    +M +DM++AI
Sbjct: 70  VSGLPEARADHAHCCVEMGMDMIEAI 95


>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis
           [TaxId: 118562]}
          Length = 197

 Score = 62.3 bits (150), Expect = 8e-12
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 476 VSILFSDVVTFTEICSRITPMEVVSMLNAMYSIFDTLTERNRVYKVETIGDAYMVVSGAP 535
           ++ILFSD+V FT + + +    V  +LN            N+    + +GDA M + GAP
Sbjct: 8   ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAP 67

Query: 536 EREHNHAEKVCDMALDM 552
           E      +    +A   
Sbjct: 68  EEMSPSEQVRRAIATAR 84


>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT)
           {Escherichia coli [TaxId: 562]}
          Length = 311

 Score = 29.5 bits (66), Expect = 1.0
 Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 344 LSDEIESDVDEKKLRLK-GQMIYMDNWRMM 372
           LSD IE+      + +  G+ + ++N   +
Sbjct: 248 LSDAIETSKGILSVPVPVGKFLLINNLFWL 277


>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
           [TaxId: 1396]}
          Length = 417

 Score = 27.5 bits (61), Expect = 4.8
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 126 RQAGVE-QPSFSTHQ----VYPDCHIPRLAQAAYQVLGISEQEFFDQMGVHFVGYVSQYG 180
           + AG++  P  STHQ    V  DC++P +    +         F  + G      ++   
Sbjct: 76  KNAGMKMIPIISTHQCGGNVGDDCNVP-IPSWVWNQKSDDSLYFKSETGTVNKETLNPLA 134

Query: 181 YDRVLSVLGRHMRDF 195
            D +    G     F
Sbjct: 135 SDVIRKEYGELYTAF 149


>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia
           coli [TaxId: 562]}
          Length = 242

 Score = 26.5 bits (58), Expect = 9.7
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 58  SYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYAMGQIREVARHFYNKNLADFIK 113
           +YP     +FI E     G+T+H R  RR      +  +R+      N  +A   +
Sbjct: 22  AYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEE 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,163,474
Number of extensions: 103456
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 17
Length of query: 583
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 493
Effective length of database: 1,171,896
Effective search space: 577744728
Effective search space used: 577744728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)