BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13607
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L G FV +W GK++NIHP+LLP FKG +AH QAL+ GV VTGCTVHFV E VDAG II
Sbjct: 102 ILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIIL 161
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKL 238
QE+VP+ DT +LSERVK AEHK +P AL+LVA+ V+L ++GK+
Sbjct: 162 QEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLG-ENGKI 208
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L G FV +W GK++NIHP+LLP FKG +AH QAL+ GV VTGCTVHFV E VDAG II
Sbjct: 91 ILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIIL 150
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKL 238
QE+VP+ DT +LSERVK AEHK +P AL+LVA+ V+L ++GK+
Sbjct: 151 QEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLG-ENGKI 197
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L G FV +W GK++NIHP+LLP FKG +AH QAL+ GV VTGCTVHFV E VDAG II
Sbjct: 91 ILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIIL 150
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKL 238
QE+VP+ DT +LSERVK AEHK +P AL+LVA+ V+L ++GK+
Sbjct: 151 QEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLG-ENGKI 197
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 82/108 (75%), Gaps = 1/108 (0%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L G FV +W GK +NIHP+LLP FKG +AH QAL+ GV VTGCTVHFV E VDAG II
Sbjct: 91 ILSGPFVQKWNGKXLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIIL 150
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKL 238
QE+VP+ DT +LSERVK AEHK +P AL+LVA+ V+L ++GK+
Sbjct: 151 QEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLG-ENGKI 197
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|C Chain C, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|D Chain D, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
Length = 215
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 74/101 (73%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L +FV W K+INIHP+LLP FKG++A QA AGV++ GCT+H+V + +DAG II
Sbjct: 94 ILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIM 153
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKL 231
Q +VP+ DT ESL+ R+ +AEH YP+ ++L+A +++KL
Sbjct: 154 QAAVPVLREDTAESLASRILAAEHVCYPKGVKLIAQDKIKL 194
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Brucella Melitensis
Length = 209
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L G F+ + G+++NIHP+LLPLF G+H H++ALDAG+++ GCTVH V E +D G I+
Sbjct: 98 LLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPILA 157
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALE-LVATERVKLDLDSG 236
Q +VP+ DT E+L+ RV AEH+ YP AL+ A E+ G
Sbjct: 158 QAAVPVLDGDTAETLAARVLKAEHRLYPLALQKFAAGEKASNQFSDG 204
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
Aeolicus
Length = 216
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 72/102 (70%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L F+ + K+INIHP+L+P F+G+HA +QA++ GV+ +GCTVH V+ESVDAG +I
Sbjct: 92 ILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIV 151
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
Q VP+ P D E +L++R+ EHK P+ ++ A +R+ +D
Sbjct: 152 QAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDRIIID 193
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
pdb|3GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
Length = 212
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 70/109 (64%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L FV+ + G+L+NIHP+LLP + G+H HRQAL+ G G +VHFV + +D G +I
Sbjct: 91 ILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVIL 150
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLD 239
Q VP++ D+E+ ++ RV++ EH YP + A R+K+ ++ LD
Sbjct: 151 QAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLD 199
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDD|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 70/109 (64%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L FV+ + G+L+NIHP+LLP + G+H HRQAL+ G G +VHFV + +D G +I
Sbjct: 91 ILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVIL 150
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLD 239
Q VP++ D+E+ ++ RV++ EH YP + A R+K+ ++ LD
Sbjct: 151 QAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLD 199
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GRC|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GAR|A Chain A, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1GAR|B Chain B, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1CDE|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|C Chain C, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|D Chain D, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 70/109 (64%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L FV+ + G+L+NIHP+LLP + G+H HRQAL+ G G +VHFV + +D G +I
Sbjct: 91 ILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVIL 150
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLD 239
Q VP++ D+E+ ++ RV++ EH YP + A R+K+ ++ LD
Sbjct: 151 QAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLD 199
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 70/109 (64%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L FV+ + G+L+NIHP+LLP + G+H HRQAL+ G G +VHFV + +D G +I
Sbjct: 91 ILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVIL 150
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLD 239
Q VP++ D+E+ ++ RV++ EH YP + A R+K+ ++ LD
Sbjct: 151 QAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLD 199
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%)
Query: 134 GEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQES 193
G + + +++NIHP+LLP F G+ A RQAL+ GV+V GCTVHFV VD G II Q +
Sbjct: 116 GPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTAGVDEGPIILQAA 175
Query: 194 VPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
VP+ DT E L R+ + EH+ YP A+ L A R+ ++
Sbjct: 176 VPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGRLVIE 214
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 7/99 (7%)
Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
VVL G + + G+++NIHP+LLP F G+HA QA+ A V+VTG T+H+V+E
Sbjct: 85 VVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVDEG 144
Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRAL 221
+D G II QE+V I DT E+L+ ++++ EH+ YP L
Sbjct: 145 MDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPATL 183
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
Formyltransferase (Purn) In Complex With Ches From
Coxiella Burnetii
Length = 215
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 61/98 (62%)
Query: 132 LCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQ 191
L FV+ + G+ INIHP+LLP + G++ H +AL AG G +VH+V E +DAG +ICQ
Sbjct: 96 LGKAFVSHYSGRXINIHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTEDLDAGPLICQ 155
Query: 192 ESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERV 229
+ I P+DT E+L RV + EH YP L A R+
Sbjct: 156 ARLSITPQDTPETLKTRVHALEHIIYPEVLSWFAAGRL 193
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Geobacillus Kaustophilus
Length = 212
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%)
Query: 136 FVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVP 195
++ + GK++NIHP+LLP F G A QA AGV TG TVH+V+E D G +I Q VP
Sbjct: 99 LLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEGXDTGPVIAQRVVP 158
Query: 196 IYPRDTEESLSERVKSAEHKAYPRALELVATER 228
I P + E+L ER+ EH+ YP L + E+
Sbjct: 159 IVPGEPIEALEERIHQVEHELYPTVLRXLLGEK 191
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DA8|B Chain B, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DCJ|A Chain A, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
pdb|3DCJ|B Chain B, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
Length = 215
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L +F++R+ G+ +N HPALLP F G H AL GV+VTG TVH V+ D G I+
Sbjct: 101 ILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILA 160
Query: 191 QESVPIYPRDTEESLSERVKSAEHK 215
Q+ VP+ D EE+L ER+K E +
Sbjct: 161 QQPVPVLDGDDEETLHERIKVTERR 185
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L E R G+ INIH + LP FKG + QA D GV++ G T H+V ++D G II
Sbjct: 178 ILSDEXSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIID 237
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
Q+ I RDT L + + E + RAL +RV L+
Sbjct: 238 QDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILN 279
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 142 GKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDT 201
G+ INIH + LP FKG + QA GV++ G T HFV +D G II Q+ + RD+
Sbjct: 188 GRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPIIAQDVEHVSHRDS 247
Query: 202 EESLSERVKSAEHKAYPRALELVATERV 229
E L + + E + RA+ L +R+
Sbjct: 248 AEDLVRKGRDIERRVLSRAVLLFLEDRL 275
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
Length = 302
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 132 LCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQ 191
LC E+ + ++INIH + LP F G + QA GV++ G T H+V E +DAG II Q
Sbjct: 198 LCREYAH----QVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQ 253
Query: 192 ESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERV 229
+ V + RD+ E+ + E R L +RV
Sbjct: 254 DVVRVSHRDSIENXVRFGRDVEKXVLARGLRAHLEDRV 291
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
Length = 286
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
VL E R G INIH +LLP FKG + QA + GV+ G T H++ +D G II
Sbjct: 178 VLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKXVGATAHYINNDLDEGPIIA 237
Query: 191 Q 191
Q
Sbjct: 238 Q 238
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
VL E R + INIH + LP FKG + QA GV++ G T HFV + +D G II
Sbjct: 183 VLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIE 242
Query: 191 Q 191
Q
Sbjct: 243 Q 243
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|B Chain B, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|C Chain C, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|D Chain D, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
Length = 317
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 145 INIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEES 204
IN+H +LLP +G A+ G TG T+ + E +DAG I+ Q V I R+T S
Sbjct: 108 INVHASLLPELRGGAPIHYAIXEGKEKTGITIXYXVEKLDAGDILTQVEVEIEERETTGS 167
Query: 205 LSERVKSA 212
L +++ A
Sbjct: 168 LFDKLSEA 175
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 130 VVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAII 189
++L + +N +R +N+H +LLP ++G ++A+ AG R TG ++ E +D G ++
Sbjct: 91 LILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIXQXNEGLDTGDVL 150
Query: 190 CQESVPIYPRDTEESLSERV 209
+ + I DT L +R+
Sbjct: 151 AKSACVISSEDTAADLHDRL 170
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of
10- Formyltetrahydrofolate Dehydrogenase
Length = 310
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 135 EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESV 194
E +N R I HP+LLP +G A L G + G T+ + ++ +D G ++ Q+
Sbjct: 93 EVINAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFTIFWADDGLDTGDLLLQKEC 152
Query: 195 PIYPRDTEESLSERVKSAEH-KAYPRALELVA 225
+ P DT +L R E K +A+ L+A
Sbjct: 153 EVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIA 184
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
Length = 314
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 145 INIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEES 204
IN+H +LLP ++G +++L AG TG T+ ++ +D G ++ + S PI DT +
Sbjct: 107 INVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGT 166
Query: 205 LSERV 209
L +++
Sbjct: 167 LYDKL 171
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 145 INIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEES 204
N+H +LLP ++G L G TG T+H + + DAGAI+ Q + I P D +
Sbjct: 101 FNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAIT 160
Query: 205 LSERV 209
L ++
Sbjct: 161 LHHKL 165
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From
Yersinia Pestis Complexed With L-Methionine
Length = 318
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 145 INIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEES 204
IN+H +LLP ++G ++++ AG TG T+ ++ +D GA++ + I P DT +
Sbjct: 111 INVHGSLLPRWRGAAPIQRSVWAGDEKTGITIMQMDIGLDTGAMLHKIECAIQPEDTSAT 170
Query: 205 LSERVK---------SAEHKAYPRAL-----ELVATERVKLDLDSGKLDFNV 242
L +++ + + A AL E AT KL + KLD+ +
Sbjct: 171 LYDKLAQLGPQGLLITLQQLAAGTALAEVQNETQATYAEKLSKEEAKLDWTL 222
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10-
Formyltetrahydrofolate 2 Dehydrogenase
pdb|2CFI|A Chain A, The Hydrolase Domain Of Human 10-Fthfd In Complex With 6-
Formyltetrahydropterin
Length = 329
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 148 HPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSE 207
HP+LLP +G A L G + G ++ + ++ +D G ++ Q+ + P DT +L
Sbjct: 128 HPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYN 187
Query: 208 RVKSAEH-KAYPRALELVATERV 229
R E K +A+ L+A +
Sbjct: 188 RFLFPEGIKGMVQAVRLIAEGKA 210
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
pdb|2BLN|B Chain B, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
Length = 305
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 145 INIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEES 204
N+H +LLP ++G L G TG T+H + + DAGAI+ Q + I P D +
Sbjct: 101 FNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAIT 160
Query: 205 LSERV 209
L ++
Sbjct: 161 LHHKL 165
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain
Length = 302
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 145 INIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEES 204
N+H +LLP ++G L G TG T+H + + DAGAI+ Q + I P D +
Sbjct: 101 FNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAIT 160
Query: 205 LSERV 209
L ++
Sbjct: 161 LHHKL 165
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae
Length = 318
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 81 KYTVYYDRTIMTDKTIPNNRPDIVVHD--KERRMALLVDIAIPNTHNMESTVVLCGEFVN 138
K T +T+ + +P +P+ D K++ AL D+ + + + +L ++
Sbjct: 49 KLTASPVKTLALEHNVPVYQPENFKSDESKQQLAALNADLXVVVAYGL----LLPKVVLD 104
Query: 139 RWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYP 198
+ IN+H ++LP ++G ++++ AG TG T+ + +D G + ++PI
Sbjct: 105 TPKLGCINVHGSILPRWRGAAPIQRSIWAGDSETGVTIXQXDVGLDTGDXLKIATLPIEA 164
Query: 199 RDTEESLSERVKSAEHKAYPRALELVA 225
DT S +++ +A L+ +A
Sbjct: 165 SDTSASXYDKLAELGPQALLECLQDIA 191
>pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
pdb|3G0S|B Chain B, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
Length = 316
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R T+E L + K+ AEH P+ L
Sbjct: 102 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPTQEGLFQHFKAIAEHTDLPQIL 156
>pdb|2A6L|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
pdb|2A6L|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
Length = 292
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R ++E L + K+ AEH P+ L
Sbjct: 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132
>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
pdb|1S5W|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
Length = 292
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R ++E L + K+ AEH P+ L
Sbjct: 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132
>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase
pdb|1DHP|B Chain B, Dihydrodipicolinate Synthase
pdb|1YXC|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXC|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXD|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|1YXD|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|2ATS|A Chain A, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
pdb|2ATS|B Chain B, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
Length = 292
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R ++E L + K+ AEH P+ L
Sbjct: 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132
>pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
pdb|1S5T|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
Length = 292
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R ++E L + K+ AEH P+ L
Sbjct: 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132
>pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7Q|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7R|A Chain A, Dihydrodipicolinate Synthase - K161r
pdb|3I7R|B Chain B, Dihydrodipicolinate Synthase - K161r
pdb|3I7S|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site.
pdb|3I7S|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site
Length = 292
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R ++E L + K+ AEH P+ L
Sbjct: 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132
>pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
pdb|2OJP|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
Length = 292
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R ++E L + K+ AEH P+ L
Sbjct: 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132
>pdb|2A6N|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
pdb|2A6N|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
Length = 292
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R ++E L + K+ AEH P+ L
Sbjct: 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132
>pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3C0J|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3DU0|A Chain A, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|3DU0|B Chain B, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|4EOU|A Chain A, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
pdb|4EOU|B Chain B, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
Length = 292
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R ++E L + K+ AEH P+ L
Sbjct: 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132
>pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A.
pdb|2PUR|B Chain B, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A
Length = 292
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 168 GVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKS-AEHKAYPRAL 221
G T + + D+G + C P Y R ++E L + K+ AEH P+ L
Sbjct: 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQIL 132
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 148 HP-ALLPLFKGMHAH-----RQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDT 201
HP A+ L +G H +A+DA V V GCT+ + + +G + + + R+
Sbjct: 333 HPKAVTMLIRGTTEHVIEEVARAVDAAVGVVGCTIE--DGRIVSGGGSTEVELSMKLREY 390
Query: 202 EESLSERVKSAEHKAYPRALELV 224
E +S R + A +A+ ALE++
Sbjct: 391 AEGISGREQLA-VRAFADALEVI 412
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,411,302
Number of Sequences: 62578
Number of extensions: 227263
Number of successful extensions: 512
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 47
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)