Query psy13607
Match_columns 245
No_of_seqs 231 out of 1629
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:32:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqq_A Methionyl-tRNA formyltr 100.0 9.3E-47 3.2E-51 340.3 17.7 191 31-243 12-218 (314)
2 3rfo_A Methionyl-tRNA formyltr 100.0 1.4E-46 4.7E-51 339.5 16.7 191 31-243 14-220 (317)
3 3q0i_A Methionyl-tRNA formyltr 100.0 2.9E-46 1E-50 337.5 15.8 200 13-243 8-223 (318)
4 1fmt_A Methionyl-tRNA FMet for 100.0 5E-46 1.7E-50 335.6 15.9 191 31-243 13-219 (314)
5 2bln_A Protein YFBG; transfera 100.0 1.1E-44 3.9E-49 325.6 16.5 188 31-243 10-213 (305)
6 2bw0_A 10-FTHFDH, 10-formyltet 100.0 1.9E-42 6.6E-47 314.0 15.4 185 31-243 32-238 (329)
7 1meo_A Phosophoribosylglycinam 100.0 4.5E-40 1.6E-44 281.0 20.8 177 34-243 11-202 (209)
8 2ywr_A Phosphoribosylglycinami 100.0 1.5E-39 5.1E-44 279.2 19.8 174 34-241 16-200 (216)
9 1jkx_A GART;, phosphoribosylgl 100.0 4E-39 1.4E-43 275.7 21.2 164 44-241 27-199 (212)
10 1z7e_A Protein aRNA; rossmann 100.0 4.9E-40 1.7E-44 321.2 17.0 187 32-243 11-213 (660)
11 3auf_A Glycinamide ribonucleot 100.0 2.8E-39 9.6E-44 279.6 19.8 175 34-242 37-222 (229)
12 3da8_A Probable 5'-phosphoribo 100.0 8.4E-39 2.9E-43 274.0 19.3 162 45-241 39-209 (215)
13 3av3_A Phosphoribosylglycinami 100.0 8.8E-39 3E-43 273.6 18.0 167 34-232 18-195 (212)
14 3tqr_A Phosphoribosylglycinami 100.0 2.8E-38 9.6E-43 270.7 19.3 164 44-241 31-203 (215)
15 3kcq_A Phosphoribosylglycinami 100.0 5.6E-38 1.9E-42 268.9 19.7 164 45-242 36-204 (215)
16 3p9x_A Phosphoribosylglycinami 100.0 2.6E-37 9E-42 263.8 18.8 167 34-232 13-194 (211)
17 4ds3_A Phosphoribosylglycinami 100.0 3.3E-37 1.1E-41 263.1 19.0 160 45-238 35-206 (209)
18 3o1l_A Formyltetrahydrofolate 100.0 1.5E-34 5E-39 259.0 20.4 125 110-240 176-300 (302)
19 3n0v_A Formyltetrahydrofolate 100.0 2.5E-34 8.4E-39 256.0 19.8 125 110-240 161-285 (286)
20 3lou_A Formyltetrahydrofolate 100.0 3.7E-34 1.3E-38 255.5 19.5 125 110-240 166-290 (292)
21 3nrb_A Formyltetrahydrofolate 100.0 6.3E-34 2.2E-38 253.5 19.0 124 110-239 160-283 (287)
22 3obi_A Formyltetrahydrofolate 100.0 1.6E-33 5.6E-38 250.9 17.9 124 110-239 161-284 (288)
23 1zgh_A Methionyl-tRNA formyltr 100.0 1E-32 3.6E-37 242.0 11.3 123 109-243 71-207 (260)
24 1a6b_B Momulv, zinc finger pro 59.1 4.9 0.00017 24.4 1.8 24 8-35 6-29 (40)
25 2elu_A Zinc finger protein 406 47.9 3.8 0.00013 23.8 -0.0 15 12-26 9-23 (37)
26 1u6p_A GAG polyprotein; MLV, A 39.0 15 0.00051 23.9 1.8 24 8-35 19-42 (56)
27 2ysa_A Retinoblastoma-binding 31.5 25 0.00086 22.7 2.0 21 10-34 5-25 (55)
28 2ds5_A CLPX, ATP-dependent CLP 31.5 20 0.00069 22.9 1.5 23 9-31 8-30 (51)
29 2hfq_A Hypothetical protein; A 30.6 17 0.00058 26.9 1.1 18 5-22 67-84 (109)
30 1ovx_A ATP-dependent CLP prote 28.7 21 0.0007 24.2 1.2 25 7-31 13-37 (67)
31 1nc8_A Nucleocapsid protein; H 28.4 30 0.001 18.9 1.7 21 11-35 5-25 (29)
32 2cqf_A RNA-binding protein LIN 28.4 34 0.0012 22.4 2.2 18 12-33 29-46 (63)
33 2a51_A Nucleocapsid protein; s 27.9 31 0.001 20.2 1.8 18 12-33 21-38 (39)
34 2bl6_A Nucleocapsid protein P1 24.1 53 0.0018 18.8 2.4 17 13-33 20-36 (37)
35 4e6f_A Uncharacterized protein 22.8 1.3E+02 0.0044 24.2 5.1 35 184-219 21-55 (181)
36 2li8_A Protein LIN-28 homolog 21.1 55 0.0019 22.2 2.2 20 11-34 23-42 (74)
37 1dsq_A Nucleic acid binding pr 20.7 44 0.0015 17.8 1.3 19 13-35 3-21 (26)
38 1vq8_1 50S ribosomal protein L 20.3 30 0.001 22.6 0.7 21 8-28 13-33 (57)
No 1
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=100.00 E-value=9.3e-47 Score=340.31 Aligned_cols=191 Identities=21% Similarity=0.314 Sum_probs=168.3
Q ss_pred cccccCHHHHhhcCceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCcccChHH-
Q psy13607 31 GCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKE- 109 (245)
Q Consensus 31 ~c~~~~l~~l~~rh~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~v~~~~~- 109 (245)
+|++.+|+++++++++|++|+|+||++ .+|+.++.++||++.|.. .+||+++|+.++++..
T Consensus 12 ~fa~~~L~~L~~~~~~v~~Vvt~pd~~-------~grg~~l~~~~v~~~A~~-----------~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 12 QFAVPTLRALIDSSHRVLAVYTQPDRP-------SGRGQKIMESPVKEIARQ-----------NEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp GGGHHHHHHHHHSSSEEEEEECCCC-----------------CCHHHHHHHH-----------TTCCEECCSCSSSHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCc-------cccCCccCCCHHHHHHHH-----------cCCCEECcccCCCHHHH
Confidence 355677899999899999999999999 567788999999999986 4899999999886543
Q ss_pred -HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCce
Q psy13607 110 -RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAI 188 (245)
Q Consensus 110 -~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~I 188 (245)
.+.++.+|++|+ ++|++|||+++|+.+++|+||+|||+||+|||++|++|||++|+++||+|+|+|++++|+|||
T Consensus 74 ~~l~~~~~Dliv~----~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~~D~G~I 149 (314)
T 3tqq_A 74 EKLIAMNADVMVV----VAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNEGLDTGDV 149 (314)
T ss_dssp HHHHTTCCSEEEE----ESCCSCCCHHHHTSSTTCEEEEESSCTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCE
T ss_pred HHHHhcCCCEEEE----cCcccccCHHHHhhCcCCEEEecCccccCCCCccHHHHHHHcCCCeeEEEEEeeecCCCCCCE
Confidence 577899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeee--------------ecCCCeEEEeec
Q psy13607 189 ICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKL--------------DLDSGKLDFNVV 243 (245)
Q Consensus 189 i~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~--------------~~~~~~~~~~~~ 243 (245)
|.|+.++|.++||.++|++|+.+++.+++.++++.+.+|++++ +++|++|||+++
T Consensus 150 i~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~~~ 218 (314)
T 3tqq_A 150 LAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEKQDEASATYASKIQKQEALIDWRKS 218 (314)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCCGGGCCBCCCCCGGGGBCCTTSB
T ss_pred EEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCCCccccCCCCCCHHHheecccCC
Confidence 9999999999999999999999999999999999999998765 367899999875
No 2
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=100.00 E-value=1.4e-46 Score=339.53 Aligned_cols=191 Identities=23% Similarity=0.290 Sum_probs=175.6
Q ss_pred cccccCHHHHhhcCceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCcccChHH-
Q psy13607 31 GCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKE- 109 (245)
Q Consensus 31 ~c~~~~l~~l~~rh~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~v~~~~~- 109 (245)
+|++.+|+++++++++|++|+|+||++ .+|+.++.++||++.|.. .+||+++|+.+....+
T Consensus 14 ~fa~~~L~~L~~~~~~v~~Vvt~pd~~-------~gRg~~l~~~pv~~~A~~-----------~gIpv~~~~~~~~~~~~ 75 (317)
T 3rfo_A 14 DFSVPVLRRLIEDGYDVIGVVTQPDRP-------VGRKKVLTPTPVKVEAEK-----------HGIPVLQPLRIREKDEY 75 (317)
T ss_dssp TTHHHHHHHHHHTTCEEEEEECCCCCE-------ETTTTEECCCHHHHHHHH-----------TTCCEECCSCTTSHHHH
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCCCcc-------cCCCcccCCCHHHHHHHH-----------cCCCEEccccCCCHHHH
Confidence 345667788998889999999999998 577889999999999986 4899999998876654
Q ss_pred -HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCce
Q psy13607 110 -RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAI 188 (245)
Q Consensus 110 -~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~I 188 (245)
.+.++.+|++|+ ++|++|||+++|+.|++|+||+|||+||+|||++|++|||++|+++||+|+|+|++++|+|||
T Consensus 76 ~~l~~~~~Dliv~----~~y~~ilp~~~l~~~~~g~iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~~DtG~I 151 (317)
T 3rfo_A 76 EKVLALEPDLIVT----AAFGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAIMEGKEKTGITIMYMVEKLDAGDI 151 (317)
T ss_dssp HHHHHHCCSEEEE----SSCCSCCCHHHHHSSTTCEEEEESSCTTSSBSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCE
T ss_pred HHHHhcCCCEEEE----cCchhhCCHHHHhhCcCCEEEECCccCcCCCCcCHHHHHHHcCCCceEEEEEEEcccCCCCCE
Confidence 577899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeee--------------cCCCeEEEeec
Q psy13607 189 ICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD--------------LDSGKLDFNVV 243 (245)
Q Consensus 189 i~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~--------------~~~~~~~~~~~ 243 (245)
|.|+.++|.++||.++|++|+.+++.+++.++++.+.+|++++. ++|++|||+++
T Consensus 152 i~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~~~ 220 (317)
T 3rfo_A 152 LTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIKQNEEEVTFAYNIKREQEKIDWTKT 220 (317)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCGGGCCBCCCCCHHHHBCCTTSC
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcceECCCCCHHHcccCHHHh
Confidence 99999999999999999999999999999999999999987653 56778999865
No 3
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=100.00 E-value=2.9e-46 Score=337.50 Aligned_cols=200 Identities=19% Similarity=0.242 Sum_probs=173.1
Q ss_pred cccccccccccccccccccccccCHHHHhhcCceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccc
Q psy13607 13 DRCRRCKEKAETIQHITSGCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMT 92 (245)
Q Consensus 13 ~~cr~C~~~~es~~Hil~~c~~~~l~~l~~rh~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~ 92 (245)
-++-|||+.. |++.+|+++++++++|++|+|+||++ .+|+.++.++||++.|..
T Consensus 8 mrivf~Gt~~---------fa~~~L~~L~~~~~~v~~Vvt~pd~p-------~grg~~~~~~~v~~~A~~---------- 61 (318)
T 3q0i_A 8 LRIVFAGTPD---------FAARHLAALLSSEHEIIAVYTQPERP-------AGRGKKLTASPVKTLALE---------- 61 (318)
T ss_dssp CEEEEECCSH---------HHHHHHHHHHTSSSEEEEEECCCC----------------CCCHHHHHHHH----------
T ss_pred CEEEEEecCH---------HHHHHHHHHHHCCCcEEEEEcCCCCc-------ccccccCCCCHHHHHHHH----------
Confidence 3556666654 44567788998899999999999999 567788999999999986
Q ss_pred cCCcCCCCCCcccChHH--HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCe
Q psy13607 93 DKTIPNNRPDIVVHDKE--RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVR 170 (245)
Q Consensus 93 ~~~i~v~qPD~v~~~~~--~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~ 170 (245)
.+||+++|+.++++.. .+.++.+|++|+ ++|++|||+++|+.|++|+||+|||+||+|||++|++|||++|++
T Consensus 62 -~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~----~~y~~ilp~~~l~~~~~g~iNiHpSlLP~yRG~~pi~~Ai~~G~~ 136 (318)
T 3q0i_A 62 -HNVPVYQPENFKSDESKQQLAALNADLMVV----VAYGLLLPKVVLDTPKLGCINVHGSILPRWRGAAPIQRSIWAGDS 136 (318)
T ss_dssp -TTCCEECCSCSCSHHHHHHHHTTCCSEEEE----SSCCSCCCHHHHTSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCS
T ss_pred -cCCCEEccCcCCCHHHHHHHHhcCCCEEEE----eCccccCCHHHHhhCcCCEEEeCCccCcCCCCcCHHHHHHHcCCC
Confidence 4899999998876543 577899999999 999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeecccCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeee--------------cCCC
Q psy13607 171 VTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD--------------LDSG 236 (245)
Q Consensus 171 ~~GvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~--------------~~~~ 236 (245)
+||+|+|+|++++|+||||.|+.++|.++||.++|++|+.+++.+++.++++.+.+|++++. ++|+
T Consensus 137 ~tGvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~~~~~tya~ki~~~d~ 216 (318)
T 3q0i_A 137 ETGVTIMQMDVGLDTGDMLKIATLPIEASDTSASMYDKLAELGPQALLECLQDIAQGTAVAVKQDDGLANYAHKLSKEEA 216 (318)
T ss_dssp EEEEEEEECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCCGGGCCBCCCCCHHHH
T ss_pred eEEEEEEEEcCCCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCCCEECCCCCHHHc
Confidence 99999999999999999999999999999999999999999999999999999999987653 4678
Q ss_pred eEEEeec
Q psy13607 237 KLDFNVV 243 (245)
Q Consensus 237 ~~~~~~~ 243 (245)
+|||+++
T Consensus 217 ~Idw~~~ 223 (318)
T 3q0i_A 217 RINWSDA 223 (318)
T ss_dssp BCCTTSB
T ss_pred eeccCCC
Confidence 9999865
No 4
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=100.00 E-value=5e-46 Score=335.58 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=170.9
Q ss_pred cccccCHHHHhhcCceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCcccChHH-
Q psy13607 31 GCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKE- 109 (245)
Q Consensus 31 ~c~~~~l~~l~~rh~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~v~~~~~- 109 (245)
+|++.+|+++++++++|++|+|+||++ .+|+.++.++||++.|.. .+||+++|+.+..+..
T Consensus 13 ~fa~~~L~~L~~~~~~i~~Vvt~pd~p-------~grg~~~~~~~v~~~A~~-----------~gIpv~~~~~~~~~~~~ 74 (314)
T 1fmt_A 13 DFAARHLDALLSSGHNVVGVFTQPDRP-------AGRGKKLMPSPVKVLAEE-----------KGLPVFQPVSLRPQENQ 74 (314)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCCBC-------------CBCCHHHHHHHH-----------TTCCEECCSCSCSHHHH
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCCCCc-------cccccccCcCHHHHHHHH-----------cCCcEEecCCCCCHHHH
Confidence 356678899888889999999999988 567788999999999985 4899999998876543
Q ss_pred -HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCce
Q psy13607 110 -RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAI 188 (245)
Q Consensus 110 -~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~I 188 (245)
.+.++.+|++|+ ++|++|||+++|+.|++|+||+||||||+|||++|++|||++|+++||+|+|+|++++|+|||
T Consensus 75 ~~l~~~~~Dliv~----~~y~~ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~~D~G~I 150 (314)
T 1fmt_A 75 QLVAELQADVMVV----VAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDM 150 (314)
T ss_dssp HHHHHTTCSEEEE----ESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCE
T ss_pred HHHHhcCCCEEEE----eeccccCCHHHHhhccCCEEEEcCCcCcCCCCcCHHHHHHHcCCCceEEEEEEEcccCcCCCE
Confidence 567899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeee--------------cCCCeEEEeec
Q psy13607 189 ICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD--------------LDSGKLDFNVV 243 (245)
Q Consensus 189 i~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~--------------~~~~~~~~~~~ 243 (245)
|.|+.++|.++||+++|++|+.+++.+++.++|+.+.+|++++. ++|++|||+.+
T Consensus 151 i~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~~~ 219 (314)
T 1fmt_A 151 LYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLS 219 (314)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCCGGGCCBCCCCCHHHHBCCTTSB
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecCCccccccCCCCCHHHhhhccccc
Confidence 99999999999999999999999999999999999999987763 45688999865
No 5
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=100.00 E-value=1.1e-44 Score=325.57 Aligned_cols=188 Identities=22% Similarity=0.253 Sum_probs=169.0
Q ss_pred cccccCHHHHhhcCceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCcccChHH-
Q psy13607 31 GCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKE- 109 (245)
Q Consensus 31 ~c~~~~l~~l~~rh~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~v~~~~~- 109 (245)
.|++.+|+++++++++|++|+|+++++.+ ++.++||++.|.. .+||+++|+.+..+..
T Consensus 10 ~fa~~~L~~L~~~~~~i~~Vvt~~d~~~g----------~~~~~~v~~~A~~-----------~gIpv~~~~~~~~~~~~ 68 (305)
T 2bln_A 10 DMGCLGIEALLAAGYEISAIFTHTDNPGE----------KAFYGSVARLAAE-----------RGIPVYAPDNVNHPLWV 68 (305)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCC----------------CCCCHHHHHHH-----------HTCCEECCSCCCSHHHH
T ss_pred HHHHHHHHHHHHCCCcEEEEEcCCCCCCC----------CcCccHHHHHHHH-----------cCCCEECCCcCCcHHHH
Confidence 45678889999989999999999998742 5678999999985 3899999998876543
Q ss_pred -HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCce
Q psy13607 110 -RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAI 188 (245)
Q Consensus 110 -~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~I 188 (245)
.+.++.+|++|+ ++|++|||+++|+.|++|+||+||||||+|||++|++|||++|+++||+|+|+|++++|+|||
T Consensus 69 ~~l~~~~~Dliv~----~~y~~ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~ai~~G~~~tGvTih~~~~~~D~G~I 144 (305)
T 2bln_A 69 ERIAQLSPDVIFS----FYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAI 144 (305)
T ss_dssp HHHHHTCCSEEEE----ESCCSCCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHHHTTCSEEEEEEEECCSSTTCSCE
T ss_pred HHHHhcCCCEEEE----eccccccCHHHHhcCcCCEEEecCCcCcCCCCccHHHHHHHcCCCcEEEEEEEECCCccCCCe
Confidence 577899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeee--------------cCCCeEEEeec
Q psy13607 189 ICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD--------------LDSGKLDFNVV 243 (245)
Q Consensus 189 i~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~--------------~~~~~~~~~~~ 243 (245)
|.|+.++|.++||.++|++|+.+++.+++.++|+.+.+|++++. ++|++|||+++
T Consensus 145 i~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~~~~~tya~k~~~~d~~Idw~~~ 213 (305)
T 2bln_A 145 VAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKP 213 (305)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCGGGCCEECCCCGGGGBCCTTSB
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecCCccccccCCCCCHHHcEECCcCC
Confidence 99999999999999999999999999999999999999987663 57899999875
No 6
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=100.00 E-value=1.9e-42 Score=313.96 Aligned_cols=185 Identities=17% Similarity=0.225 Sum_probs=164.7
Q ss_pred cccccCHHHHhhcCceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCcccC----
Q psy13607 31 GCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVH---- 106 (245)
Q Consensus 31 ~c~~~~l~~l~~rh~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~v~~---- 106 (245)
.+++..++++++++++|++|+|+||++. .++||++.|.. .+||+++|+....
T Consensus 32 ~fa~~~L~~L~~~~~~i~~Vvt~pd~~~-------------~~~~v~~~A~~-----------~gIpv~~~~~~~~~~~~ 87 (329)
T 2bw0_A 32 LFGQEVYCHLRKEGHEVVGVFTVPDKDG-------------KADPLGLEAEK-----------DGVPVFKYSRWRAKGQA 87 (329)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCCSS-------------CCCHHHHHHHH-----------HTCCEEECSCCEETTEE
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCcCC-------------CCCHHHHHHHH-----------cCCCEEecCcccccccc
Confidence 3455667888888899999999999762 16799998875 3899999987653
Q ss_pred -hHH--HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccC
Q psy13607 107 -DKE--RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESV 183 (245)
Q Consensus 107 -~~~--~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~ 183 (245)
+.. .++++.+|++|+ ++|++|||+++|+.|++|+||+||||||+|||++|++|||++|+++||+|+|+|++++
T Consensus 88 ~~~~~~~l~~~~~Dliv~----a~y~~ilp~~il~~~~~g~iNiHpSLLP~yRG~~pi~~Ai~~G~~~tGvTvh~~~~~l 163 (329)
T 2bw0_A 88 LPDVVAKYQALGAELNVL----PFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGL 163 (329)
T ss_dssp CHHHHHHHHTTCCSEEEE----SSCSSCCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCSSS
T ss_pred cHHHHHHHHhcCCCEEEE----eehhhhCCHHHHhhCcCCEEEEcCCcCcCCCCcCHHHHHHHcCCCcEEEEEEEECCcC
Confidence 222 466889999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhhCCeee--------------ecCCCeEEEeec
Q psy13607 184 DAGAIICQESVPIYPRDTEESLSER-VKSAEHKAYPRALELVATERVKL--------------DLDSGKLDFNVV 243 (245)
Q Consensus 184 D~G~Ii~q~~~~I~~~dt~~~l~~~-l~~~~~~ll~~~l~~l~~g~~~~--------------~~~~~~~~~~~~ 243 (245)
|+||||.|+.++|.++||+++|++| ++.++.+++.++++.+.+|++++ +++|++|||+++
T Consensus 164 DtG~Ii~Q~~v~I~~~dt~~~L~~r~l~~~~~~ll~~~l~~l~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~~~ 238 (329)
T 2bw0_A 164 DTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINWDQP 238 (329)
T ss_dssp SCSCEEEEEEEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHHTCCCCBCCCSTTCCBCCCCCGGGGBCCCSSC
T ss_pred cCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCccccccccCCCHHHcEEcccCC
Confidence 9999999999999999999999999 58999999999999999998765 366889999875
No 7
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=100.00 E-value=4.5e-40 Score=280.98 Aligned_cols=177 Identities=41% Similarity=0.653 Sum_probs=150.8
Q ss_pred ccCHHHHhhc------CceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCC--CCCccc
Q psy13607 34 AMSQTEYLHR------HNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNN--RPDIVV 105 (245)
Q Consensus 34 ~~~l~~l~~r------h~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~--qPD~v~ 105 (245)
...|++++++ +++|++|+|+++++. .++.|.. .+||++ +|....
T Consensus 11 Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~-----------------~~~~A~~-----------~gIp~~~~~~~~~~ 62 (209)
T 1meo_A 11 GSNLQALIDSTREPNSSAQIDIVISNKAAVA-----------------GLDKAER-----------AGIPTRVINHKLYK 62 (209)
T ss_dssp CTTHHHHHHHHHSTTCSCEEEEEEESSTTCH-----------------HHHHHHH-----------TTCCEEECCGGGSS
T ss_pred chHHHHHHHHHhcCCCCcEEEEEEeCCCChH-----------------HHHHHHH-----------cCCCEEEECccccC
Confidence 3567777654 679999999987652 2455553 367775 666555
Q ss_pred Ch----HH---HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEe
Q psy13607 106 HD----KE---RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHF 178 (245)
Q Consensus 106 ~~----~~---~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~ 178 (245)
+. .+ .+.++.+|++|+ ++|++|||+++|+.+++++||+|||+||+|||++|++|||++|+++||+|+|+
T Consensus 63 ~r~~~~~~~~~~l~~~~~Dliv~----a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~ 138 (209)
T 1meo_A 63 NRVEFDSAIDLVLEEFSIDIVCL----AGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHF 138 (209)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEE----ESCCSCCCHHHHHHTTTSEEEEESSSTTSSCSSCHHHHHHHHTCSEEEEEEEE
T ss_pred chhhhhHHHHHHHHhcCCCEEEE----cchhhhCCHHHHhhhcCCEEEEccCcCcCCCCccHHHHHHHcCCCcEEEEEEE
Confidence 41 21 456789999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEEEeec
Q psy13607 179 VEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFNVV 243 (245)
Q Consensus 179 ~~~~~D~G~Ii~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~~~~~ 243 (245)
|++++|+||||.|+.++|.++||.++|++|+.+++.+++.++++.+.+|++.+. .+|++.|++-
T Consensus 139 v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~-~~~~~~~~~~ 202 (209)
T 1meo_A 139 VAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLG-ENGKICWVKE 202 (209)
T ss_dssp CCC---CCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTSEEEC-TTSSEEECCC
T ss_pred ECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-CCCeEEEecc
Confidence 999999999999999999999999999999999999999999999999999986 3699999863
No 8
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=100.00 E-value=1.5e-39 Score=279.15 Aligned_cols=174 Identities=30% Similarity=0.526 Sum_probs=150.9
Q ss_pred ccCHHHHhhcCc--eEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCC--CCCcccC---
Q psy13607 34 AMSQTEYLHRHN--QVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNN--RPDIVVH--- 106 (245)
Q Consensus 34 ~~~l~~l~~rh~--~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~--qPD~v~~--- 106 (245)
...++++.+.++ +|++|+|+++.+ ++++.|.. .+||++ +|....+
T Consensus 16 ~~~l~~l~~~~~~~~i~~Vvs~~~~~-----------------~~~~~A~~-----------~gIp~~~~~~~~~~~r~~ 67 (216)
T 2ywr_A 16 QAIIDAIESGKVNASIELVISDNPKA-----------------YAIERCKK-----------HNVECKVIQRKEFPSKKE 67 (216)
T ss_dssp HHHHHHHHTTSSCEEEEEEEESCTTC-----------------HHHHHHHH-----------HTCCEEECCGGGSSSHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCCCh-----------------HHHHHHHH-----------cCCCEEEeCcccccchhh
Confidence 445566666555 899999987533 46677764 367776 4554443
Q ss_pred -hHH---HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeeccc
Q psy13607 107 -DKE---RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182 (245)
Q Consensus 107 -~~~---~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~ 182 (245)
+.+ .+.+..+|++|+ ++|++|||+++++.+++++||+|||+||+|||++|++|||++|+++||+|+|+|+++
T Consensus 68 ~~~~~~~~l~~~~~Dliv~----a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~~ 143 (216)
T 2ywr_A 68 FEERMALELKKKGVELVVL----AGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDES 143 (216)
T ss_dssp HHHHHHHHHHHTTCCEEEE----SSCCSCCCHHHHTTSTTCEEEEESSCTTTTCSTTHHHHHHHHTCSEEEEEEEECCSS
T ss_pred hhHHHHHHHHhcCCCEEEE----eCchhhCCHHHHhhccCCeEEEcCCcCcCCCCccHHHHHHHcCCCeEEEEEEEEccc
Confidence 122 466889999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEEEe
Q psy13607 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFN 241 (245)
Q Consensus 183 ~D~G~Ii~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~~~ 241 (245)
+|+||||.|+.++|.++||.++|++|+.+++.+++.++++.+.+|++... ++++.|.
T Consensus 144 ~D~G~Ii~q~~~~i~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~--~~~~~~~ 200 (216)
T 2ywr_A 144 VDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDRIIID--GRKVIVK 200 (216)
T ss_dssp SSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE--TTEEEET
T ss_pred CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCeec--CCeeEEe
Confidence 99999999999999999999999999999999999999999999999887 8888764
No 9
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=100.00 E-value=4e-39 Score=275.70 Aligned_cols=164 Identities=30% Similarity=0.543 Sum_probs=145.9
Q ss_pred CceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCC--cccC----hHH---HHHhh
Q psy13607 44 HNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPD--IVVH----DKE---RRMAL 114 (245)
Q Consensus 44 h~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD--~v~~----~~~---~~~~l 114 (245)
+++|++|+|+++.+ ++++.|.. .+||+++++ .+.+ +.+ .+.++
T Consensus 27 ~~~i~~Vis~~~~~-----------------~~~~~A~~-----------~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~ 78 (212)
T 1jkx_A 27 KGTVRAVFSNKADA-----------------FGLERARQ-----------AGIATHTLIASAFDSREAYDRELIHEIDMY 78 (212)
T ss_dssp SSEEEEEEESCTTC-----------------HHHHHHHH-----------TTCEEEECCGGGCSSHHHHHHHHHHHHGGG
T ss_pred CceEEEEEeCCCch-----------------HHHHHHHH-----------cCCcEEEeCcccccchhhccHHHHHHHHhc
Confidence 46899999997543 45677764 378888765 3332 122 46788
Q ss_pred hcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceEEEEEE
Q psy13607 115 LVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESV 194 (245)
Q Consensus 115 ~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~ 194 (245)
.+|++|+ ++|++|||+++++.+++++||+|||+||+|||++|++|||++|+++||+|+|+|++++|+||||.|+.+
T Consensus 79 ~~Dliv~----agy~~il~~~~l~~~~~~~iNiHpSlLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v 154 (212)
T 1jkx_A 79 APDVVVL----AGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKV 154 (212)
T ss_dssp CCSEEEE----SSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEEEE
T ss_pred CCCEEEE----eChhhhCCHHHHhhccCCEEEEccCcccCCCCccHHHHHHHcCCCceEEEEEEEcccccCCCEEEEEEE
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEEEe
Q psy13607 195 PIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFN 241 (245)
Q Consensus 195 ~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~~~ 241 (245)
+|.++||.++|++|+.+++.+++.++++.+.+|++++. ++++.|.
T Consensus 155 ~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~--~~~~~~~ 199 (212)
T 1jkx_A 155 PVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMH--ENAAWLD 199 (212)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE--TTEEEET
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceEe--CCEEEEc
Confidence 99999999999999999999999999999999999987 8888774
No 10
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=100.00 E-value=4.9e-40 Score=321.15 Aligned_cols=187 Identities=22% Similarity=0.254 Sum_probs=166.4
Q ss_pred ccccCHHHHhhcCceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCcccChHH--
Q psy13607 32 CSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKE-- 109 (245)
Q Consensus 32 c~~~~l~~l~~rh~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~v~~~~~-- 109 (245)
+++.+|+++++++++|++|+|+++++.+ ++.++||++.|.. .+||+++|+.+..+..
T Consensus 11 ~~~~~l~~l~~~~~~i~~v~t~~~~~~~----------~~~~~~~~~~a~~-----------~~ip~~~~~~~~~~~~~~ 69 (660)
T 1z7e_A 11 MGCLGIEALLAAGYEISAIFTHTDNPGE----------KAFYGSVARLAAE-----------RGIPVYAPDNVNHPLWVE 69 (660)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCC------------------CCHHHHHHH-----------HTCCEECCSCTTSHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCCcc----------CcCccHHHHHHHH-----------cCCCEeccCCCCcHHHHH
Confidence 5567889999989999999999987732 5678999999985 3899999998876543
Q ss_pred HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceE
Q psy13607 110 RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAII 189 (245)
Q Consensus 110 ~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii 189 (245)
.+.++.+|++|+ ++|++|||+++|+.+++|+||+||||||+|||++|++|||++|+++||+|+|+|++++|+||||
T Consensus 70 ~l~~~~~d~iv~----~~~~~il~~~~l~~~~~~~iNiH~slLP~~rG~~p~~~ai~~g~~~~G~t~~~~~~~~D~G~ii 145 (660)
T 1z7e_A 70 RIAQLSPDVIFS----FYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIV 145 (660)
T ss_dssp HHHHHCCSEEEE----ESCCSCCCHHHHTTCTTCEEEEESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECCSSTTTSCEE
T ss_pred HHHhcCCCEEEE----cCcccccCHHHHhcCCCCeEEecCCcCCCCCCccHHHHHHHcCCCcEEEEEEEECCCccCCCee
Confidence 567899999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeee--------------cCCCeEEEeec
Q psy13607 190 CQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD--------------LDSGKLDFNVV 243 (245)
Q Consensus 190 ~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~--------------~~~~~~~~~~~ 243 (245)
.|+.++|.++||.++|++|+.+++.+++.++|+.+.+|++++. ++|++|||+++
T Consensus 146 ~q~~~~i~~~dt~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~idw~~~ 213 (660)
T 1z7e_A 146 AQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKP 213 (660)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCBCCCGGGCCCCCCCCGGGGBCCTTSB
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeCCCccCccCCCCCHHHcEeCCCCC
Confidence 9999999999999999999999999999999999999987763 57899999875
No 11
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=100.00 E-value=2.8e-39 Score=279.59 Aligned_cols=175 Identities=33% Similarity=0.523 Sum_probs=150.6
Q ss_pred ccCHHHHhhc--CceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCC--CCCcccC---
Q psy13607 34 AMSQTEYLHR--HNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNN--RPDIVVH--- 106 (245)
Q Consensus 34 ~~~l~~l~~r--h~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~--qPD~v~~--- 106 (245)
...++++.+. +++|++|+|+++.+ ++++.|.. .+||++ +|..+..
T Consensus 37 ~~~l~~l~~~~~~~~I~~Vvt~~~~~-----------------~~~~~A~~-----------~gIp~~~~~~~~~~~r~~ 88 (229)
T 3auf_A 37 QAILDGCREGRIPGRVAVVISDRADA-----------------YGLERARR-----------AGVDALHMDPAAYPSRTA 88 (229)
T ss_dssp HHHHHHHHTTSSSEEEEEEEESSTTC-----------------HHHHHHHH-----------TTCEEEECCGGGSSSHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEcCCCch-----------------HHHHHHHH-----------cCCCEEEECcccccchhh
Confidence 3445555554 46899999985422 46777764 367775 4555443
Q ss_pred -hHH---HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeeccc
Q psy13607 107 -DKE---RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182 (245)
Q Consensus 107 -~~~---~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~ 182 (245)
+.+ .+.+..+|++|+ ++|++|||+++|+.|++++||+||||||+|||++|++|||++|+++||+|+|+|+++
T Consensus 89 ~~~~~~~~l~~~~~Dliv~----agy~~IL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~ 164 (229)
T 3auf_A 89 FDAALAERLQAYGVDLVCL----AGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTAG 164 (229)
T ss_dssp HHHHHHHHHHHTTCSEEEE----SSCCSCCCHHHHHHSTTCEEEEESSCTTSSCSSCHHHHHHHHTCSEEEEEEEECCSS
T ss_pred ccHHHHHHHHhcCCCEEEE----cChhHhCCHHHHhhccCCEEEEccCcCcCCCCcCHHHHHHHcCCCeEEEEEEEECCC
Confidence 122 466889999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEEEee
Q psy13607 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFNV 242 (245)
Q Consensus 183 ~D~G~Ii~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~~~~ 242 (245)
+|+||||.|+.++|.++||+++|++|+.+++.+++.++++.+.+|++.+. ++++.|..
T Consensus 165 ~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~--~~~~~~~~ 222 (229)
T 3auf_A 165 VDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGRLVIE--GRRVRILD 222 (229)
T ss_dssp TTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE--TTEEEECC
T ss_pred CcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEe--CCEEEEcC
Confidence 99999999999999999999999999999999999999999999999987 89988753
No 12
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=100.00 E-value=8.4e-39 Score=273.99 Aligned_cols=162 Identities=32% Similarity=0.476 Sum_probs=146.0
Q ss_pred ceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCcccC------hHH---HHHhhh
Q psy13607 45 NQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVH------DKE---RRMALL 115 (245)
Q Consensus 45 ~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~v~~------~~~---~~~~l~ 115 (245)
.+|++|+|++++ ++++.|.. .+||+++|+.-.. +.+ .+.++.
T Consensus 39 ~eI~~Vis~~~a------------------~~~~~A~~-----------~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 89 (215)
T 3da8_A 39 ARVVAVGVDREC------------------RAAEIAAE-----------ASVPVFTVRLADHPSRDAWDVAITAATAAHE 89 (215)
T ss_dssp EEEEEEEESSCC------------------HHHHHHHH-----------TTCCEEECCGGGSSSHHHHHHHHHHHHHTTC
T ss_pred CeEEEEEeCCch------------------HHHHHHHH-----------cCCCEEEeCcccccchhhhhHHHHHHHHhhC
Confidence 489999999862 45677764 3888888863211 122 467889
Q ss_pred cceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceEEEEEEe
Q psy13607 116 VDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVP 195 (245)
Q Consensus 116 ~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~~ 195 (245)
+|++|+ ++|++|||+++++.|++++||+||||||+|||++|++|||.+|++++|+|+|+|++++|+||||.|+.++
T Consensus 90 ~Dlivl----agy~~iL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~lD~G~Ii~Q~~v~ 165 (215)
T 3da8_A 90 PDLVVS----AGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVP 165 (215)
T ss_dssp CSEEEE----EECCSCCCHHHHHHHTTTEEEEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEEEEEEE
T ss_pred CCEEEE----cCchhhCCHHHHhhccCCeEEeCcccccCCCCchHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEEEEEee
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEEEe
Q psy13607 196 IYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFN 241 (245)
Q Consensus 196 I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~~~ 241 (245)
|.++||.++|++|+.+++.+++.++++.+.+|++... ++++.|.
T Consensus 166 I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~--~~~~~~~ 209 (215)
T 3da8_A 166 VLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVV--GRTATMG 209 (215)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEE--TTEEEEC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEe--CCEEEEe
Confidence 9999999999999999999999999999999999987 9999886
No 13
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=100.00 E-value=8.8e-39 Score=273.63 Aligned_cols=167 Identities=31% Similarity=0.478 Sum_probs=139.8
Q ss_pred ccCHHHHhhc--CceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCC--CCCcccCh--
Q psy13607 34 AMSQTEYLHR--HNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNN--RPDIVVHD-- 107 (245)
Q Consensus 34 ~~~l~~l~~r--h~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~--qPD~v~~~-- 107 (245)
...++++.+. +++|++|+|+++. +++++.|.. .+||++ +|....+.
T Consensus 18 ~~~l~~l~~~~l~~~I~~Vit~~~~-----------------~~v~~~A~~-----------~gIp~~~~~~~~~~~~~~ 69 (212)
T 3av3_A 18 QAIVDAAKRGDLPARVALLVCDRPG-----------------AKVIERAAR-----------ENVPAFVFSPKDYPSKAA 69 (212)
T ss_dssp HHHHHHHHTTCCCEEEEEEEESSTT-----------------CHHHHHHHH-----------TTCCEEECCGGGSSSHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCCC-----------------cHHHHHHHH-----------cCCCEEEeCcccccchhh
Confidence 3445555554 5799999998542 278888874 377776 44444331
Q ss_pred --H---HHHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeeccc
Q psy13607 108 --K---ERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182 (245)
Q Consensus 108 --~---~~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~ 182 (245)
. +.+.++.+|++|+ ++|++|||+++++.|++++||+||||||+|||++|++|||++|+++||+|+|+|+++
T Consensus 70 ~~~~~~~~l~~~~~Dliv~----a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~ 145 (212)
T 3av3_A 70 FESEILRELKGRQIDWIAL----AGYMRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEG 145 (212)
T ss_dssp HHHHHHHHHHHTTCCEEEE----SSCCSCCCHHHHHHTTTCEEEEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCSS
T ss_pred hHHHHHHHHHhcCCCEEEE----chhhhhCCHHHHhhhcCCEEEEecCcCCCCCCcCHHHHHHHcCCCeEEEEEEEECCC
Confidence 1 2466889999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeee
Q psy13607 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232 (245)
Q Consensus 183 ~D~G~Ii~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~ 232 (245)
+|+||||.|+.++|.++||+++|++|+.+++.+++.++++.+.+|+++.+
T Consensus 146 ~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~~~~ 195 (212)
T 3av3_A 146 MDTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPTVLRMLLGEKEQQE 195 (212)
T ss_dssp SSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999999999999999999999999988764
No 14
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=100.00 E-value=2.8e-38 Score=270.72 Aligned_cols=164 Identities=30% Similarity=0.505 Sum_probs=141.7
Q ss_pred CceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCc--ccC----hHH---HHHhh
Q psy13607 44 HNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDI--VVH----DKE---RRMAL 114 (245)
Q Consensus 44 h~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~--v~~----~~~---~~~~l 114 (245)
..+|++|+|+.+.. ..++.|.. .+||+++.+. ..+ +.+ .+.++
T Consensus 31 ~~eI~~Vis~~~~a-----------------~~~~~A~~-----------~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~ 82 (215)
T 3tqr_A 31 AIEIRAVISNRADA-----------------YGLKRAQQ-----------ADIPTHIIPHEEFPSRTDFESTLQKTIDHY 82 (215)
T ss_dssp SEEEEEEEESCTTC-----------------HHHHHHHH-----------TTCCEEECCGGGSSSHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCcch-----------------HHHHHHHH-----------cCCCEEEeCccccCchhHhHHHHHHHHHhc
Confidence 36899999985433 23455553 3677766432 111 222 46788
Q ss_pred hcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceEEEEEE
Q psy13607 115 LVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESV 194 (245)
Q Consensus 115 ~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~ 194 (245)
.+|++|+ ++|++|||+++++.+++++||+|||+||+|||++|++|||.+|++++|+|+|+|++++|+||||.|+.+
T Consensus 83 ~~Dliv~----agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v 158 (215)
T 3tqr_A 83 DPKLIVL----AGFMRKLGKAFVSHYSGRMINIHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTEDLDAGPLICQARL 158 (215)
T ss_dssp CCSEEEE----SSCCSCCCHHHHHHTTTSEEEEESSSTTTTCSSCHHHHHHHTTCSEEEEEEEECC-CTTCSCEEEEEEE
T ss_pred CCCEEEE----ccchhhCCHHHHhhccCCeEEeCcccCCCCCChhHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEEEEEE
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEEEe
Q psy13607 195 PIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFN 241 (245)
Q Consensus 195 ~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~~~ 241 (245)
+|.++||.++|++|+.+++.+++.++++.+.+|++++. ++++.|.
T Consensus 159 ~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~--~~~~~~~ 203 (215)
T 3tqr_A 159 SITPQDTPETLKTRVHALEHIIYPEVLSWFAAGRLNYH--NNQVFLD 203 (215)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE--TTEEEET
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEec--CCEEEEc
Confidence 99999999999999999999999999999999999987 9998874
No 15
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=100.00 E-value=5.6e-38 Score=268.89 Aligned_cols=164 Identities=36% Similarity=0.597 Sum_probs=143.0
Q ss_pred ceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCC--cccChH--HHHHhhhcceee
Q psy13607 45 NQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPD--IVVHDK--ERRMALLVDIAI 120 (245)
Q Consensus 45 ~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD--~v~~~~--~~~~~l~~Dv~v 120 (245)
.+|++|+|+.... +..+.|.. .+||+++++ .+.++. +.+.+..+|++|
T Consensus 36 ~~I~~Vis~~~~a-----------------~~l~~A~~-----------~gIp~~~~~~~~~~~~~~~~~L~~~~~Dliv 87 (215)
T 3kcq_A 36 VVISCVISNNAEA-----------------RGLLIAQS-----------YGIPTFVVKRKPLDIEHISTVLREHDVDLVC 87 (215)
T ss_dssp EEEEEEEESCTTC-----------------THHHHHHH-----------TTCCEEECCBTTBCHHHHHHHHHHTTCSEEE
T ss_pred cEEEEEEeCCcch-----------------HHHHHHHH-----------cCCCEEEeCcccCChHHHHHHHHHhCCCEEE
Confidence 5899999974322 22455553 377777543 233222 256788999999
Q ss_pred ccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceEEEEEEeCCCCC
Q psy13607 121 PNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRD 200 (245)
Q Consensus 121 ~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~~I~~~d 200 (245)
+ ++|++|||+++++.|++++||+|||+||+|||++|++|||.+|++++|+|+|+|++++|+||||.|+.++|.++|
T Consensus 88 l----agy~~IL~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~lD~G~Ii~Q~~v~I~~~d 163 (215)
T 3kcq_A 88 L----AGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLRED 163 (215)
T ss_dssp E----SSCCSCCCHHHHHHTTTSEEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTC
T ss_pred E----eCCceEeCHHHHhhccCCeEEECcccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEEEEEeecCCCC
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCeee-ecCCCeEEEee
Q psy13607 201 TEESLSERVKSAEHKAYPRALELVATERVKL-DLDSGKLDFNV 242 (245)
Q Consensus 201 t~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~-~~~~~~~~~~~ 242 (245)
|.++|.+|+.+++.+++.++++.+.+|++.. . ++++.|..
T Consensus 164 t~~~L~~rl~~~e~~ll~~~l~~~~~g~~~~~~--~~~~~~~~ 204 (215)
T 3kcq_A 164 TAESLASRILAAEHVCYPKGVKLIAQDKIKLCD--DGTVQCTG 204 (215)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECT--TSCEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEcc--CCEEEEeC
Confidence 9999999999999999999999999999998 5 89998864
No 16
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=100.00 E-value=2.6e-37 Score=263.82 Aligned_cols=167 Identities=31% Similarity=0.525 Sum_probs=144.4
Q ss_pred ccCHHHHhhc---C---ceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCC--CCCccc
Q psy13607 34 AMSQTEYLHR---H---NQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNN--RPDIVV 105 (245)
Q Consensus 34 ~~~l~~l~~r---h---~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~--qPD~v~ 105 (245)
...+++++++ + .+|++|+|+.. ..|+++.|.. .+||++ +|..+.
T Consensus 13 Gsnl~ali~~~~~~~l~~eI~~Visn~~-----------------~a~v~~~A~~-----------~gIp~~~~~~~~~~ 64 (211)
T 3p9x_A 13 GTNAEAIIQSQKAGQLPCEVALLITDKP-----------------GAKVVERVKV-----------HEIPVCALDPKTYP 64 (211)
T ss_dssp CHHHHHHHHHHHTTCCSSEEEEEEESCS-----------------SSHHHHHHHT-----------TTCCEEECCGGGSS
T ss_pred chHHHHHHHHHHcCCCCcEEEEEEECCC-----------------CcHHHHHHHH-----------cCCCEEEeChhhcC
Confidence 4556666532 2 48999999632 1378888875 378865 454444
Q ss_pred Ch----HH---HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEe
Q psy13607 106 HD----KE---RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHF 178 (245)
Q Consensus 106 ~~----~~---~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~ 178 (245)
+. .+ .+.++.+|++|+ ++|++|||+++|+.+++|+||+|||+||+|||++|++|||++|++++|+|+|+
T Consensus 65 ~r~~~d~~~~~~l~~~~~Dliv~----agy~~Il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~ 140 (211)
T 3p9x_A 65 SKEAYEIEVVQQLKEKQIDFVVL----AGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHY 140 (211)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEE----SSCCSCCCHHHHHHHTTSEEEEESSCTTSSCSSCHHHHHHHTTCSEEEEEEEE
T ss_pred chhhhHHHHHHHHHhcCCCEEEE----eCchhhcCHHHHhhccCCeEEECCccCCCCCCccHHHHHHHcCCCeEEEEEEE
Confidence 32 11 467889999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeee
Q psy13607 179 VEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232 (245)
Q Consensus 179 ~~~~~D~G~Ii~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~ 232 (245)
|++++|+||||.|+.++|.++||.++|.+|+.+++.+++.++++.+.+|+.+..
T Consensus 141 v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~ 194 (211)
T 3p9x_A 141 VDEGMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPATLHKLLSKAENLY 194 (211)
T ss_dssp CCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCTTTCCS
T ss_pred EcCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 999999999999999999999999999999999999999999999999988763
No 17
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=100.00 E-value=3.3e-37 Score=263.08 Aligned_cols=160 Identities=34% Similarity=0.607 Sum_probs=131.2
Q ss_pred ceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCc--ccC----hHH---HHHhhh
Q psy13607 45 NQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDI--VVH----DKE---RRMALL 115 (245)
Q Consensus 45 ~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~--v~~----~~~---~~~~l~ 115 (245)
.+|++|+|+.... +..+.|.. .+||+++++. ..+ +.+ .+.++.
T Consensus 35 ~~I~~Visn~~~a-----------------~~l~~A~~-----------~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 86 (209)
T 4ds3_A 35 AEIVAVFSDKAEA-----------------GGLAKAEA-----------AGIATQVFKRKDFASKEAHEDAILAALDVLK 86 (209)
T ss_dssp EEEEEEEESCTTC-----------------THHHHHHH-----------TTCCEEECCGGGSSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEEEECCccc-----------------HHHHHHHH-----------cCCCEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 5899999974322 22355553 3777776553 222 112 467889
Q ss_pred cceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceEEEEEEe
Q psy13607 116 VDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVP 195 (245)
Q Consensus 116 ~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~~ 195 (245)
+|++|+ ++|++|||+++++.|++++||+|||+||+|||++|++|||.+|++++|+|+|+|++++|+||||.|+.++
T Consensus 87 ~Dliv~----agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~v~ 162 (209)
T 4ds3_A 87 PDIICL----AGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPILAQAAVP 162 (209)
T ss_dssp CSEEEE----SSCCSCCCHHHHGGGTTCEEEEESSCTTSSCSSCHHHHHHHTTCSEEEEEEEECCC--CCCCEEEEEEEE
T ss_pred CCEEEE----eccccCcCHHHHhhccCCeEEECCccccCCCChhHHHHHHHcCCCeEEEEEEEEcCCCCCCCeEEEEEEe
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCe---eeecCCCeE
Q psy13607 196 IYPRDTEESLSERVKSAEHKAYPRALELVATERV---KLDLDSGKL 238 (245)
Q Consensus 196 I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~---~~~~~~~~~ 238 (245)
|.++||.++|.+|+.+++.+++.++++.+.+|++ ... ++++
T Consensus 163 I~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~~~~~~~--~~~~ 206 (209)
T 4ds3_A 163 VLDGDTAETLAARVLKAEHRLYPLALQKFAAGEKASNQFS--DGMV 206 (209)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC------------CC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeee--CCEe
Confidence 9999999999999999999999999999999998 655 5553
No 18
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=100.00 E-value=1.5e-34 Score=258.95 Aligned_cols=125 Identities=28% Similarity=0.383 Sum_probs=120.1
Q ss_pred HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceE
Q psy13607 110 RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAII 189 (245)
Q Consensus 110 ~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii 189 (245)
.+.+..+|++|+ ++|++|||+++++.++.++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+||||
T Consensus 176 ~l~~~~~DliVl----agym~IL~~~~l~~~~~~~INiHpSlLP~frG~~p~~~Ai~~G~k~tG~TvH~v~~~lD~GpII 251 (302)
T 3o1l_A 176 LVGHHQADVVVL----ARYMQILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPII 251 (302)
T ss_dssp HHHHTTCSEEEE----SSCCSCCCTTHHHHTTTCEEEEESSCTTSSCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEE
T ss_pred HHHHhCCCEEEH----hHhhhhcCHHHHhhhhCCeEEeCcccccCCCCccHHHHHHHcCCCeEEEEEEEECCCCcCCCeE
Confidence 456889999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEEE
Q psy13607 190 CQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDF 240 (245)
Q Consensus 190 ~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~~ 240 (245)
.|+.++|.++||+++|.+|+.+++.+++.++++.+.+|++... ++++.+
T Consensus 252 ~Q~~v~I~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~v~~~--~~~~~v 300 (302)
T 3o1l_A 252 EQDVVRVSHRDSIENMVRFGRDVEKMVLARGLRAHLEDRVLVH--DNKTVV 300 (302)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE--TTEEEE
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEc--CCEEEE
Confidence 9999999999999999999999999999999999999999987 777654
No 19
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=100.00 E-value=2.5e-34 Score=256.00 Aligned_cols=125 Identities=29% Similarity=0.380 Sum_probs=119.9
Q ss_pred HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceE
Q psy13607 110 RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAII 189 (245)
Q Consensus 110 ~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii 189 (245)
.+.+..+|++|+ ++|++|||+++++.+++++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+||||
T Consensus 161 ~l~~~~~Dlivl----a~y~~il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~GpIi 236 (286)
T 3n0v_A 161 VIEETGAELVIL----ARYMQVLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINNDLDEGPII 236 (286)
T ss_dssp HHHHHTCSEEEE----SSCCSCCCHHHHHHTTTSEEEEEECSSTTCCCSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEE
T ss_pred HHHhcCCCEEEe----cccccccCHHHHhhhcCCeEEeccccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCcee
Confidence 456789999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEEE
Q psy13607 190 CQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDF 240 (245)
Q Consensus 190 ~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~~ 240 (245)
.|+.++|.++||+++|.+|+.+++.+++.++++.+.+|++... ++++.+
T Consensus 237 ~Q~~~~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~--~~~~~v 285 (286)
T 3n0v_A 237 AQGVEVVDHSHYPEDLIAKGRDIECLTLARAVGYHIERRVFLN--ANRTVV 285 (286)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE--TTEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEc--CCEEEE
Confidence 9999999999999999999999999999999999999999987 777643
No 20
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=100.00 E-value=3.7e-34 Score=255.48 Aligned_cols=125 Identities=29% Similarity=0.330 Sum_probs=120.1
Q ss_pred HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceE
Q psy13607 110 RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAII 189 (245)
Q Consensus 110 ~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii 189 (245)
.+.+..+|++|+ ++|++|||+++++.+++++||+|||+||+|||++|++||+.+|++++|+|+|+|++++|+||||
T Consensus 166 ~l~~~~~Dlivl----a~y~~il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~G~Ii 241 (292)
T 3lou_A 166 VFETSGAELVIL----ARYMQVLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPII 241 (292)
T ss_dssp HHHHHTCSEEEE----SSCCSCCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEE
T ss_pred HHHHhCCCEEEe----cCchhhCCHHHHhhhcCCeEEeCCCcCcCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCCEE
Confidence 456789999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEEE
Q psy13607 190 CQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDF 240 (245)
Q Consensus 190 ~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~~ 240 (245)
.|+.++|.++||+++|.+|+.+++.+++.++++.+.+|++... ++++.+
T Consensus 242 ~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~--~~~~~v 290 (292)
T 3lou_A 242 EQVVERVDHSYRPEQLLAVGRDVECITLARAVKAFIERRVFLN--GDRTVV 290 (292)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE--TTEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEc--CCEEEE
Confidence 9999999999999999999999999999999999999999987 777654
No 21
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=100.00 E-value=6.3e-34 Score=253.47 Aligned_cols=124 Identities=28% Similarity=0.440 Sum_probs=119.1
Q ss_pred HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceE
Q psy13607 110 RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAII 189 (245)
Q Consensus 110 ~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii 189 (245)
.+.+..+|++|+ ++|++|||+++++.+++++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+||||
T Consensus 160 ~l~~~~~Dlivl----agym~il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~Ai~~G~k~tG~Tvh~v~~~lD~GpIi 235 (287)
T 3nrb_A 160 IVTQSQADLIVL----ARYMQILSDDLSAFLSGRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPII 235 (287)
T ss_dssp HHHHHTCSEEEE----SSCCSCCCHHHHHHHTTSEEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCSSSSCCCEE
T ss_pred HHHHhCCCEEEh----hhhhhhcCHHHHhhccCCeEEECcccccCCCCchHHHHHHHcCCCeEEEEEEEECCCCcCCCEE
Confidence 456788999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEE
Q psy13607 190 CQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLD 239 (245)
Q Consensus 190 ~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~ 239 (245)
.|+.++|.++||+++|.+|+.+++.+++.++++.+.+|++... ++++.
T Consensus 236 ~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~--~~~~~ 283 (287)
T 3nrb_A 236 AQDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLEDRLIVN--GERTV 283 (287)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE--TTEEE
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEc--CCEEE
Confidence 9999999999999999999999999999999999999999987 66654
No 22
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=100.00 E-value=1.6e-33 Score=250.93 Aligned_cols=124 Identities=33% Similarity=0.478 Sum_probs=119.1
Q ss_pred HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCceE
Q psy13607 110 RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAII 189 (245)
Q Consensus 110 ~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii 189 (245)
.+.+..+|++|+ ++|++|||+++++.+++++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+||||
T Consensus 161 ~l~~~~~Dlivl----agy~~il~~~~l~~~~~~~iNiHpSlLP~~rG~~p~~~A~~~G~~~~G~Tvh~v~~~~D~GpIi 236 (288)
T 3obi_A 161 LIAQTHTDLVVL----ARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPII 236 (288)
T ss_dssp HHHHHTCCEEEE----SSCCSCCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEE
T ss_pred HHHhcCCCEEEh----hhhhhhCCHHHHhhhcCCeEEeCcccccCCCCchHHHHHHHcCCCEEEEEEEEECCCCcCCCeE
Confidence 456789999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeecCCCeEE
Q psy13607 190 CQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLD 239 (245)
Q Consensus 190 ~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~~~~~~~~~ 239 (245)
.|+.++|.++||+++|.+|+.+++.+++.++++.+.+|++... ++++.
T Consensus 237 ~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~--~~~~~ 284 (288)
T 3obi_A 237 DQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILN--GRKTV 284 (288)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE--TTEEE
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEc--CCEEE
Confidence 9999999999999999999999999999999999999999987 66644
No 23
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=99.98 E-value=1e-32 Score=241.95 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=111.1
Q ss_pred HHHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCce
Q psy13607 109 ERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAI 188 (245)
Q Consensus 109 ~~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~I 188 (245)
+.+.++.+|++|+ ++|++|||+++|+. +|+||+|||+||+|||++|++|||++|+++||+|+|+|++++|+|||
T Consensus 71 ~~L~~~~pDliv~----~~y~~ilp~~il~~--~g~iNiHpSLLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~lDtG~I 144 (260)
T 1zgh_A 71 EKVKLINPEYILF----PHWSWIIPKEIFEN--FTCVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDI 144 (260)
T ss_dssp HHHHHHCCSEEEE----SSCCSCCCHHHHTT--SCEEEEESSCTTTTEESCHHHHHHHTTCCEEEEEEEECCSSSSCSCE
T ss_pred HHHHhcCCCEEEE----eccccccCHHHHcc--CCEEEEeCCcCCCCCCcCHHHHHHHcCCCcEEEEEEEEccCccCCCe
Confidence 3677899999999 99999999999996 67999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhCCeee-------------ecCCCeEEEeec
Q psy13607 189 ICQESVPIYPRDTEESLSERVKSAEH-KAYPRALELVATERVKL-------------DLDSGKLDFNVV 243 (245)
Q Consensus 189 i~q~~~~I~~~dt~~~l~~~l~~~~~-~ll~~~l~~l~~g~~~~-------------~~~~~~~~~~~~ 243 (245)
|.|+.++|. ||.++|++|+.+++. +++.+++. |++++ +++|++|||+++
T Consensus 145 i~Q~~v~I~--dt~~~L~~rl~~~~~~~ll~~~~~----g~~~~~pQ~~~~ty~~k~~k~d~~Idw~~~ 207 (260)
T 1zgh_A 145 FFKRDLDLY--GTAEEIFMRASKIIFNDMIPELLT----KRPVPQKQEGEATVFQRRKPEQSEISPDFD 207 (260)
T ss_dssp EEEEEEECC--SCHHHHHHHHHHHHHHTHHHHHHH----HCCCCBCCCSCCCEECCCCGGGGBCCTTSC
T ss_pred EEEEEEecc--CCHHHHHHHHHHHHHHHHHHHHHc----CCCcceeCCCCceeeecCCHHHcEECcccC
Confidence 999999999 999999999999999 88776664 44333 257889999865
No 24
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=59.12 E-value=4.9 Score=24.44 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=20.7
Q ss_pred CCcCcccccccccccccccccccccccc
Q psy13607 8 PNVRDDRCRRCKEKAETIQHITSGCSAM 35 (245)
Q Consensus 8 ~~~~~~~cr~C~~~~es~~Hil~~c~~~ 35 (245)
++.....|..|++.+ |....|+-.
T Consensus 6 ~~~~~~~C~~Cgk~G----H~ardCP~~ 29 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKG----HWAKDCPKK 29 (40)
T ss_dssp CSCCSSSCSSSCCTT----CCTTSCSSS
T ss_pred CCCCCCeeeECCCCC----cchhhCcCC
Confidence 566788999999999 999999864
No 25
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=47.86 E-value=3.8 Score=23.82 Aligned_cols=15 Identities=33% Similarity=0.815 Sum_probs=10.4
Q ss_pred ccccccccccccccc
Q psy13607 12 DDRCRRCKEKAETIQ 26 (245)
Q Consensus 12 ~~~cr~C~~~~es~~ 26 (245)
..-||||+++-.-+.
T Consensus 9 kqhcrfckkkysdvk 23 (37)
T 2elu_A 9 KQHCRFCKKKYSDVK 23 (37)
T ss_dssp CCEETTTTEECSSHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356999998764443
No 26
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=38.96 E-value=15 Score=23.92 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=20.2
Q ss_pred CCcCcccccccccccccccccccccccc
Q psy13607 8 PNVRDDRCRRCKEKAETIQHITSGCSAM 35 (245)
Q Consensus 8 ~~~~~~~cr~C~~~~es~~Hil~~c~~~ 35 (245)
++...+.|..||+.+ |.-..|+-.
T Consensus 19 ~~~~~~~C~~Cge~G----H~ardCp~~ 42 (56)
T 1u6p_A 19 SQLDRDQCAYCKEKG----HWAKDCPKK 42 (56)
T ss_dssp TTCCTTBCSSSCCBS----SCGGGCTTC
T ss_pred CCCCCCcceeCCCCC----cccccCcCC
Confidence 456678899999999 999999864
No 27
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.52 E-value=25 Score=22.74 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=17.6
Q ss_pred cCccccccccccccccccccccccc
Q psy13607 10 VRDDRCRRCKEKAETIQHITSGCSA 34 (245)
Q Consensus 10 ~~~~~cr~C~~~~es~~Hil~~c~~ 34 (245)
-....|-+|++.+ |.+..|+.
T Consensus 5 p~~~~C~kCGk~G----H~~k~Cp~ 25 (55)
T 2ysa_A 5 SSGYTCFRCGKPG----HYIKNCPT 25 (55)
T ss_dssp SSSCCCTTTCCTT----SCGGGCSG
T ss_pred CCCCccccCCCcC----cccccCCC
Confidence 3456799999999 99999973
No 28
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=31.47 E-value=20 Score=22.85 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=17.5
Q ss_pred CcCcccccccccccccccccccc
Q psy13607 9 NVRDDRCRRCKEKAETIQHITSG 31 (245)
Q Consensus 9 ~~~~~~cr~C~~~~es~~Hil~~ 31 (245)
+.....|-|||+...-+..+++|
T Consensus 8 ~~~~~~CSFCGk~~~ev~~LIaG 30 (51)
T 2ds5_A 8 SGKLLYCSFCGKSQHEVRKLIAG 30 (51)
T ss_dssp -CCCCBCTTTCCBTTTSSCEEEC
T ss_pred CCCCcEecCCCCCHHHhcccCCC
Confidence 44456899999988778888876
No 29
>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} SCOP: d.375.1.1
Probab=30.57 E-value=17 Score=26.89 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=14.9
Q ss_pred ccCCCcCccccccccccc
Q psy13607 5 IKDPNVRDDRCRRCKEKA 22 (245)
Q Consensus 5 ~~~~~~~~~~cr~C~~~~ 22 (245)
+++...++..|+||.+..
T Consensus 67 ~~~~~vT~~eC~FCHsE~ 84 (109)
T 2hfq_A 67 EEGATVTSEECRFCHSEK 84 (109)
T ss_dssp CCCSCCCTTTBCCCEEEE
T ss_pred cCCCccchhhCccccccc
Confidence 467788999999999766
No 30
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=28.71 E-value=21 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=16.5
Q ss_pred CCCcCcccccccccccccccccccc
Q psy13607 7 DPNVRDDRCRRCKEKAETIQHITSG 31 (245)
Q Consensus 7 ~~~~~~~~cr~C~~~~es~~Hil~~ 31 (245)
+.......|-|||+...-+..+++|
T Consensus 13 ~~~~~~~~CSFCGK~e~eV~~LIaG 37 (67)
T 1ovx_A 13 DGSGKLLYCSFCGKSQHEVRKLIAG 37 (67)
T ss_dssp -----CCCCTTTCCCTTTSSSEEEC
T ss_pred CCCCCCcEecCCCCCHHHHcccCCC
Confidence 4444556899999988777788776
No 31
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=28.38 E-value=30 Score=18.95 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.2
Q ss_pred Ccccccccccccccccccccccccc
Q psy13607 11 RDDRCRRCKEKAETIQHITSGCSAM 35 (245)
Q Consensus 11 ~~~~cr~C~~~~es~~Hil~~c~~~ 35 (245)
...+|-.|++.+ |+...|+.+
T Consensus 5 ~~~~C~nCgk~G----H~ar~C~~p 25 (29)
T 1nc8_A 5 KVIRCWNCGKEG----HSARQCRAP 25 (29)
T ss_dssp CCCBCTTTSCBS----SCGGGCCSS
T ss_pred CCCEEEECCccc----cCHhHCccc
Confidence 356799999998 999889754
No 32
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.36 E-value=34 Score=22.40 Aligned_cols=18 Identities=22% Similarity=0.842 Sum_probs=8.8
Q ss_pred cccccccccccccccccccccc
Q psy13607 12 DDRCRRCKEKAETIQHITSGCS 33 (245)
Q Consensus 12 ~~~cr~C~~~~es~~Hil~~c~ 33 (245)
...|.+|++.. |+..+|+
T Consensus 29 ~~~C~~Cg~~G----H~ar~Cp 46 (63)
T 2cqf_A 29 PKKCHFCQSIS----HMVASCP 46 (63)
T ss_dssp SSCCTTTCCSS----SCTTTCT
T ss_pred CCccCCcCCcC----CccCcCC
Confidence 34455555544 5555554
No 33
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=27.91 E-value=31 Score=20.18 Aligned_cols=18 Identities=28% Similarity=0.741 Sum_probs=12.2
Q ss_pred cccccccccccccccccccccc
Q psy13607 12 DDRCRRCKEKAETIQHITSGCS 33 (245)
Q Consensus 12 ~~~cr~C~~~~es~~Hil~~c~ 33 (245)
...|.+|++.+ |+..+|+
T Consensus 21 ~~~C~~Cg~~G----H~~~~C~ 38 (39)
T 2a51_A 21 QEGCWNCGSKE----HRFAQCP 38 (39)
T ss_dssp CSSCTTTCCSS----SCTTTSC
T ss_pred CCccccCCCCC----CccCcCc
Confidence 45677777766 7766664
No 34
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=24.09 E-value=53 Score=18.81 Aligned_cols=17 Identities=29% Similarity=0.876 Sum_probs=10.9
Q ss_pred ccccccccccccccccccccc
Q psy13607 13 DRCRRCKEKAETIQHITSGCS 33 (245)
Q Consensus 13 ~~cr~C~~~~es~~Hil~~c~ 33 (245)
..|.+|++.+ |+..+|+
T Consensus 20 ~~C~~Cg~~G----H~a~~C~ 36 (37)
T 2bl6_A 20 KVCFKCKQPG----HFSKQCR 36 (37)
T ss_dssp TTCSSCCCTT----GGGGTTC
T ss_pred CeEccCCCcC----CccCcCc
Confidence 5677777666 6666654
No 35
>4e6f_A Uncharacterized protein; PF14730 family protein, DUF4468 with TBP-like fold,structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.49A {Bacteroides ovatus}
Probab=22.81 E-value=1.3e+02 Score=24.22 Aligned_cols=35 Identities=9% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q psy13607 184 DAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPR 219 (245)
Q Consensus 184 D~G~Ii~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~ 219 (245)
-.|.|+.+..+++ |+.+..++|+++..-..+++.+
T Consensus 21 vdGKVvFt~~i~v-Pg~S~~qIYd~~~~wl~~~~~~ 55 (181)
T 4e6f_A 21 VDGKVVFSKEFQI-PGMSQAQIYDTMTKWMDERLKE 55 (181)
T ss_dssp ETTEEEEEEEEEC-TTSCHHHHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEEEecC-CCCCHHHHHHHHHHHHHHHhcc
Confidence 3699999999999 5699999999998877776654
No 36
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=21.09 E-value=55 Score=22.25 Aligned_cols=20 Identities=30% Similarity=0.725 Sum_probs=13.8
Q ss_pred Cccccccccccccccccccccccc
Q psy13607 11 RDDRCRRCKEKAETIQHITSGCSA 34 (245)
Q Consensus 11 ~~~~cr~C~~~~es~~Hil~~c~~ 34 (245)
....|..|++.. |+...|+.
T Consensus 23 r~~~C~~Cg~~G----H~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLD----HHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSS----SCTTTCSS
T ss_pred CCCcccccCCcC----cCcccCCC
Confidence 445677777776 77777764
No 37
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=20.69 E-value=44 Score=17.80 Aligned_cols=19 Identities=26% Similarity=0.653 Sum_probs=16.1
Q ss_pred ccccccccccccccccccccccc
Q psy13607 13 DRCRRCKEKAETIQHITSGCSAM 35 (245)
Q Consensus 13 ~~cr~C~~~~es~~Hil~~c~~~ 35 (245)
..|-.|++.. |+-..|+..
T Consensus 3 ~~Cf~CG~~G----H~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTG----HIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBS----SCTTTTTCC
T ss_pred CeeEeCCCCC----cccccCCCc
Confidence 5799999998 999999854
No 38
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=20.30 E-value=30 Score=22.64 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=14.9
Q ss_pred CCcCccccccccccccccccc
Q psy13607 8 PNVRDDRCRRCKEKAETIQHI 28 (245)
Q Consensus 8 ~~~~~~~cr~C~~~~es~~Hi 28 (245)
-+-+-.+||+|+..+.-++.-
T Consensus 13 ~~ktH~~CrRCG~~syH~qK~ 33 (57)
T 1vq8_1 13 NTTTHTKCRRCGEKSYHTKKK 33 (57)
T ss_dssp CCCCEEECTTTCSEEEETTTT
T ss_pred CCCccccccccCChhhhcccc
Confidence 345667899999988754433
Done!