RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13607
(245 letters)
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN;
glycinamide ribonucleotide transformylase, structure;
1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Length = 215
Score = 183 bits (466), Expect = 3e-58
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
VV G +F++R+ G+ +N HPALLP F G H AL GV+VTG TVH V+
Sbjct: 93 VVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAG 152
Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
D G I+ Q+ VP+ D EE+L ER+K E + A+ +AT V +
Sbjct: 153 TDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVV 202
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis;
1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A*
1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A*
1mej_B 1men_A*
Length = 209
Score = 182 bits (464), Expect = 5e-58
Identities = 64/104 (61%), Positives = 79/104 (75%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L G FV +W GK++NIHP+LLP FKG +AH QAL+ GV VTGCTVHFV E VDAG II
Sbjct: 91 ILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIIL 150
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLD 234
QE+VP+ DT +LSERVK AEHK +P AL+LVA+ V+L +
Sbjct: 151 QEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGEN 194
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
biosynthesis, anti-cancer agent; HET: 138; 1.60A
{Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A*
1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Length = 212
Score = 181 bits (461), Expect = 1e-57
Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 7/117 (5%)
Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
VVL G FV+ + G+L+NIHP+LLP + G+H HRQAL+ G G +VHFV +
Sbjct: 83 VVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDE 142
Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLD 239
+D G +I Q VP++ D+E+ ++ RV++ EH YP + A R+K+ ++ LD
Sbjct: 143 LDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLD 199
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; 2.07A {Symbiobacterium toebii}
Length = 229
Score = 181 bits (463), Expect = 1e-57
Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 7/110 (6%)
Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
V L G + + +++NIHP+LLP F G+ A RQAL+ GV+V GCTVHFV
Sbjct: 105 VCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQRQALEHGVKVAGCTVHFVTAG 164
Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
VD G II Q +VP+ DT E L R+ + EH+ YP A+ L A R+ ++
Sbjct: 165 VDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGRLVIE 214
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics,
PSI-biology, protein STRU initiative; 1.90A {Bacillus
halodurans}
Length = 211
Score = 180 bits (459), Expect = 2e-57
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 7/119 (5%)
Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
VVL G + + G+++NIHP+LLP F G+HA QA+ A V+VTG T+H+V+E
Sbjct: 85 VVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVDEG 144
Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFN 241
+D G II QE+V I DT E+L+ ++++ EH+ YP L + ++ L S +
Sbjct: 145 MDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPATLHKLLSKAENLYFQSHHHHHH 203
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines,
nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella
burnetii}
Length = 215
Score = 180 bits (460), Expect = 3e-57
Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
+VL G FV+ + G++INIHP+LLP + G++ H +AL AG G +VH+V E
Sbjct: 87 IVLAGFMRKLGKAFVSHYSGRMINIHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTED 146
Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
+DAG +ICQ + I P+DT E+L RV + EH YP L A R+
Sbjct: 147 LDAGPLICQARLSITPQDTPETLKTRVHALEHIIYPEVLSWFAAGRLNYH 196
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Length = 216
Score = 180 bits (458), Expect = 4e-57
Identities = 49/110 (44%), Positives = 74/110 (67%), Gaps = 7/110 (6%)
Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
VVL G F+ + K+INIHP+L+P F+G+HA +QA++ GV+ +GCTVH V+ES
Sbjct: 84 VVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDES 143
Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
VDAG +I Q VP+ P D E +L++R+ EHK P+ ++ A +R+ +D
Sbjct: 144 VDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDRIIID 193
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Length = 212
Score = 179 bits (457), Expect = 7e-57
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
+ L G ++ + GK++NIHP+LLP F G A QA AGV TG TVH+V+E
Sbjct: 86 IALAGYMRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEG 145
Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
+D G +I Q VPI P + E+L ER+ EH+ YP L ++ E+ + +
Sbjct: 146 MDTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPTVLRMLLGEKEQQE 195
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.85A {Brucella melitensis BV}
Length = 209
Score = 179 bits (456), Expect = 7e-57
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 7/110 (6%)
Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
+ L G F+ + G+++NIHP+LLPLF G+H H++ALDAG+++ GCTVH V E
Sbjct: 90 ICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTEG 149
Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
+D G I+ Q +VP+ DT E+L+ RV AEH+ YP AL+ A +
Sbjct: 150 MDEGPILAQAAVPVLDGDTAETLAARVLKAEHRLYPLALQKFAAGEKASN 199
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics,
niaid, seattle structural center for infectious disease,
ssgcid; 2.20A {Anaplasma phagocytophilum}
Length = 215
Score = 177 bits (451), Expect = 5e-56
Identities = 50/102 (49%), Positives = 74/102 (72%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L +FV W K+INIHP+LLP FKG++A QA AGV++ GCT+H+V + +DAG II
Sbjct: 94 ILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIM 153
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
Q +VP+ DT ESL+ R+ +AEH YP+ ++L+A +++KL
Sbjct: 154 QAAVPVLREDTAESLASRILAAEHVCYPKGVKLIAQDKIKLC 195
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 92.7 bits (231), Expect = 1e-22
Identities = 34/99 (34%), Positives = 45/99 (45%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
VL E R + INIH + LP FKG + QA GV++ G T HFV + +D G II
Sbjct: 183 VLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIE 242
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERV 229
Q + E L + E RA++ RV
Sbjct: 243 QVVERVDHSYRPEQLLAVGRDVECITLARAVKAFIERRV 281
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 92.3 bits (230), Expect = 1e-22
Identities = 34/99 (34%), Positives = 46/99 (46%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
VL E R G INIH +LLP FKG + QA + GV++ G T H++ +D G II
Sbjct: 178 VLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKMVGATAHYINNDLDEGPIIA 237
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERV 229
Q + E L + + E RA+ RV
Sbjct: 238 QGVEVVDHSHYPEDLIAKGRDIECLTLARAVGYHIERRV 276
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Length = 287
Score = 92.3 bits (230), Expect = 1e-22
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L + G+ INIH + LP FKG + QA GV++ G T HFV +D G II
Sbjct: 177 ILSDDLSAFLSGRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPIIA 236
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERV 229
Q+ + RD+ E L + + E + RA+ L +R+
Sbjct: 237 QDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLEDRL 275
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Length = 288
Score = 92.3 bits (230), Expect = 2e-22
Identities = 38/99 (38%), Positives = 52/99 (52%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L E R G+ INIH + LP FKG + QA D GV++ G T H+V ++D G II
Sbjct: 178 ILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIID 237
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERV 229
Q+ I RDT L + + E + RAL +RV
Sbjct: 238 QDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRV 276
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Length = 302
Score = 91.9 bits (229), Expect = 2e-22
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
+L + + ++INIH + LP F G + QA GV++ G T H+V E +DAG II
Sbjct: 193 ILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIE 252
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERV 229
Q+ V + RD+ E++ + E R L +RV
Sbjct: 253 QDVVRVSHRDSIENMVRFGRDVEKMVLARGLRAHLEDRV 291
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis,
methyltransferase; HET: FON U5P; 1.2A {Escherichia coli}
SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Length = 305
Score = 62.5 bits (153), Expect = 8e-12
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 145 INIHPALLPLFKGMHA---HRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDT 201
N+H +LLP ++G + L G TG T+H + + DAGAI+ Q + I P D
Sbjct: 101 FNLHGSLLPKYRG--RAPLNW-VLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDI 157
Query: 202 EESLSERVKSAEHKAYPRALELVATERV--------------KLDLDSGKLDFN 241
+L ++ A + + L + + + D L+++
Sbjct: 158 AITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWH 211
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 60.8 bits (148), Expect = 6e-11
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 145 INIHPALLPLFKGMHA---HRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDT 201
N+H +LLP ++G + L G TG T+H + + DAGAI+ Q + I P D
Sbjct: 101 FNLHGSLLPKYRG--RAPLNW-VLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDI 157
Query: 202 EESLSER 208
+L +
Sbjct: 158 AITLHHK 164
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide
biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP:
b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Length = 329
Score = 58.0 bits (141), Expect = 3e-10
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 145 INIHPALLPLFKGMHA---HRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDT 201
I HP+LLP +G A + L G + G ++ + ++ +D G ++ Q+ + P DT
Sbjct: 125 IIYHPSLLPRHRG--ASAINW-TLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDT 181
Query: 202 EESLSERVKSAE-HKAYPRALELVATERV--------------KLDLDSGKLDFN 241
+L R E K +A+ L+A + ++ K++++
Sbjct: 182 VSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINWD 236
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Length = 317
Score = 56.0 bits (136), Expect = 2e-09
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 145 INIHPALLPLFKGMHA---HRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDT 201
IN+H +LLP +G H A+ G TG T+ ++ E +DAG I+ Q V I R+T
Sbjct: 108 INVHASLLPELRG--GAPIHY-AIMEGKEKTGITIMYMVEKLDAGDILTQVEVEIEERET 164
Query: 202 EESLSER 208
SL ++
Sbjct: 165 TGSLFDK 171
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation
initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1
c.65.1.1 PDB: 2fmt_A* 3r8x_A
Length = 314
Score = 55.6 bits (135), Expect = 2e-09
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 145 INIHPALLPLFKGMHA---HRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDT 201
IN+H +LLP ++G A R +L AG TG T+ ++ +D G ++ + S PI DT
Sbjct: 107 INVHGSLLPRWRG--AAPIQR-SLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDT 163
Query: 202 EESLSER 208
+L ++
Sbjct: 164 SGTLYDK 170
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid; 1.89A
{Vibrio cholerae}
Length = 318
Score = 55.2 bits (134), Expect = 4e-09
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 145 INIHPALLPLFKGMHA--HRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTE 202
IN+H ++LP ++G A R ++ AG TG T+ ++ +D G ++ ++PI DT
Sbjct: 111 INVHGSILPRWRG-AAPIQR-SIWAGDSETGVTIMQMDVGLDTGDMLKIATLPIEASDTS 168
Query: 203 ESLSER 208
S+ ++
Sbjct: 169 ASMYDK 174
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A
{Coxiella burnetii}
Length = 314
Score = 54.8 bits (133), Expect = 4e-09
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 145 INIHPALLPLFKGMHA---HRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDT 201
+N+H +LLP ++G A R A+ AG R TG ++ + E +D G ++ + + I DT
Sbjct: 106 VNVHASLLPRWRG--AAPIQR-AILAGDRETGISIMQMNEGLDTGDVLAKSACVISSEDT 162
Query: 202 EESLSER 208
L +R
Sbjct: 163 AADLHDR 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 1e-06
Identities = 44/276 (15%), Positives = 78/276 (28%), Gaps = 71/276 (25%)
Query: 1 MKHIIKDPNVRD--DRCRRCKEKAETIQHITSGCSAMSQTEYL------HRHNQVAAIIH 52
+ + + +D D + K E I HI A+S T L + V +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 53 QNISSNLKLIDEKTPYYKYEP-PPVIETAKYTVYYDRTIMTDKTIPN---NRPDIVVHDK 108
+ + N K + K E P + T Y DR ++ +R
Sbjct: 85 EVLRINYKFLMSP---IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY---L 138
Query: 109 ERRMALLVDIAIPNT--HNM----ESTVVL--C------GEFVNR--W--RGKLINIHPA 150
+ R ALL N + ++ V L C + + W +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 151 LLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVK 210
L L Q L + + + + S+ ++
Sbjct: 199 LEML--------QKLLYQIDPNWTS---------------RSDHSSNIKLRIHSIQAELR 235
Query: 211 S-AEHKAYPRALELVATERVKLD--LDSGKLD-FNV 242
+ K Y L LV L ++ + FN+
Sbjct: 236 RLLKSKPYENCL-LV------LLNVQNAKAWNAFNL 264
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1
c.65.1.1
Length = 260
Score = 46.9 bits (112), Expect = 2e-06
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 145 INIHPALLPLFKGMHA---HRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDT 201
+ H LP +G ++ G++ T + V+ +D G I + + D
Sbjct: 101 VVFHMTDLPFGRG--GSPLQN-LIERGIKKTKISAIKVDGGIDTGDIFFKRDL-----DL 152
Query: 202 EESLSER 208
+ E
Sbjct: 153 YGTAEEI 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.033
Identities = 31/234 (13%), Positives = 60/234 (25%), Gaps = 90/234 (38%)
Query: 8 PNVRD--DRCRRCKEKAE--TIQHITSGCSAMSQTEYLHRHNQVAAIIH------QNISS 57
+D +R + +I I +N V IH + I
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIV-------------INNPVNLTIHFGGEKGKRIRE 1686
Query: 58 N-------------------LKLIDEKTPYYKYEPP-----------PVIETAKYTVYYD 87
N K I+E + Y + P + + +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF-- 1744
Query: 88 RTIMTDKTIPNNRPDIVV--HDKERRMAL-----LVDIA--IPNTHNMESTVVLCGEFVN 138
+ + IP D H +L L +A + +ES V + V
Sbjct: 1745 EDLKSKGLIP---ADATFAGH------SLGEYAALASLADVMS----IESLVEV----V- 1786
Query: 139 RWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQE 192
+RG + +P + + F +E++ + +
Sbjct: 1787 FYRGMTMQ---VAVP--RDELGRSNYGMIAINPGRVAASFSQEALQY---VVER 1832
Score = 33.1 bits (75), Expect = 0.10
Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 60/136 (44%)
Query: 116 VDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCT 175
V+I++ N +V+ G P L L+ +R
Sbjct: 366 VEISLVNGAKN---LVVSG-------------PPQSL----------YGLNLTLR----- 394
Query: 176 VHFVEESVDAGAIICQESVPIYPRDTEESLSER----------VKSAEHKAYPRALELVA 225
A + + Q +P SER V S H L A
Sbjct: 395 ------KAKAPSGLDQSRIP---------FSERKLKFSNRFLPVASPFHSHL---LV-PA 435
Query: 226 TERVKLDLDSGKLDFN 241
++ + DL + FN
Sbjct: 436 SDLINKDLVKNNVSFN 451
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 28.6 bits (64), Expect = 1.8
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 65 KTPYYKYEPPPVIETAKY---TVYYDRTIM-TDKTIPNNRPDIVVHDKERRMALLVDI-A 119
KT + K + V+ + D T KT P+ K+ ++ ++
Sbjct: 152 KTEWPKSDITKVLAPYSDRMKKLIEDPDKFYTPKTRPSGHDIGKSFSKDNGGSIPPNLLQ 211
Query: 120 IPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPL 154
I N+ + G+++ + I HPA P
Sbjct: 212 ISNSESN-------GQYLANCKLMGIKAHPARFPA 239
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration,
fumarate reductace, succinate dehydrogenase, CO quinol,
quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D*
2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Length = 119
Score = 27.3 bits (60), Expect = 2.3
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 136 FVNRWRGKLINIHPALLPLFKGMH-AHRQALDAGVRVTGCTVHF 178
F + G++ +LPL+ G+H H D + V F
Sbjct: 58 FAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVF 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.0
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 15/37 (40%)
Query: 53 QNI---SSNLKLIDEKTPYYKYEP--PPVIETAKYTV 84
Q + ++LKL Y P + K T+
Sbjct: 20 QALKKLQASLKL---------YADDSAPAL-AIKATM 46
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation,
nanotemplate, langmuir-blodgett, films, oxygen
transport; HET: HEM; 1.65A {Methylacidiphilum infernorum
V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Length = 131
Score = 27.0 bits (60), Expect = 3.6
Identities = 5/24 (20%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 143 KLINIHPALLPLF-KGMHAHRQAL 165
L P + LF + + + L
Sbjct: 30 NLFKEEPTVSVLFQNPISSQSRKL 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,824,731
Number of extensions: 225927
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 36
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.1 bits)